Prupe.8G047700_v2.0.a1

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000734
Physical Location & Seq
Forward (+)
5106342 .. 5113343
7002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G047700.1

Sequence Viewer

Length: 939 bp
ATGGTGGGAGATTCACATTTTCCTTCAACACACCAACTTACCACCACCCACATCAGATCCATCATCAGCAAACGAGACAAACACGAACCGTTTTACGTTCTGGATTTGGGGGTTCTTGTCAGCCTCATGAAAAAATGGAGCCATTGCCTTCCCAATGTTCAGCCCTTCTTTGTTGTCAAGTGTAACCATGACCCTGCATTCATTGCTGCATTGGCAACACTTGGTGCAAGCTTTGATTGTGCCAGCAAGGTCGAGATTGAGGCCATCTTTGCTCATGGTGTAAGCCCCACGAAAATTGTTTATGCCAATCCATGCAAGGATGAGTACCATTTAAGGTATGCAGCTGGAGTCAGGGTCGATCTTGCGACCTTTGACTCCATGGATGAAGTTGATATGATCAAAAGGTGCCACCTCAAATGTTCCTTGTTGTTTCGGATTGCTGTACCGAATGACAAGAGCTCGTGGCGTTCATTCGGGACCAAATTTGGTGCGTTGCCTGAGGAGGTCGCACCACTCCTCAGACATGCACACAAACTAGGGTTAAGAGTGGTGGGAATTTCGTTCCATGTGGGATCGAAAGCATCTGAACCTCAGGCATGTTTGTCAGATTCTGATCTGACGGTGATGGCTGAGCCAGGAAGGTTCTTTGCTAAAACTGCATTCACAATGGTTGCAAATGTGATGGGGAAGAGAGTGAGGGGAGAGAAAAGAGAGTATTGGAAATATCTCTCTCTATACGCATCAATTCTCTCTGTCCAAACCCTATCCCCATTGAATCTACCTCCAAGCTCTATCACCATAGTTTGCGCGACGAAAAACATTGGTCGCGCAAAGTTTTGCTCGACGAAATACATTGGTCGTGCAAAGTTTTGCGCGACGAAATACATTGGTCGCACAACTGTTTGCGCGACGAAATACATTGGTCGCGCAAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

313

Amino Acids

34.6

Weight (kDa)

9.51

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 405
AccII CGCG 5 cut(s) 809, 828, 875, 908, 927
AclWI GGATC 2 cut(s) 51, 580
AcsI RAATTY 2 cut(s) 482, 555
AdeI CACNNNGTG 1 cut(s) 224
AfaI GTAC 2 cut(s) 326, 444
AgsI TTSAA 2 cut(s) 27, 775
AjnI CCWGG 1 cut(s) 634
AluBI AGCT 4 cut(s) 231, 344, 459, 789
AluI AGCT 4 cut(s) 231, 344, 459, 789
Alw21I GWGCWC 1 cut(s) 461
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 51, 580
AlwNI CAGNNNCTG 1 cut(s) 611
AoxI GGCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 206, 341
ApoI RAATTY 2 cut(s) 482, 555
AspLEI GCGC 5 cut(s) 809, 830, 875, 908, 929
AspS9I GGNCC 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 634, 787
AvaII GGWCC 1 cut(s) 477
AxyI CCTNAGG 2 cut(s) 498, 591
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 461
BauI CACGAG 1 cut(s) 460
Bbv12I GWGCWC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 193, 353
BccI CCATC 4 cut(s) 68, 272, 619, 676
BciT130I CCWGG 1 cut(s) 636
BclI TGATCA 1 cut(s) 396
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 1 cut(s) 536
BisI GCNGC 2 cut(s) 207, 342
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 2 cut(s) 208, 343
Bme1390I CCNGG 1 cut(s) 636
Bme18I GGWCC 1 cut(s) 477
BmgT120I GGNCC 1 cut(s) 477
BmiI GGNNCC 3 cut(s) 140, 407, 478
BmrFI CCNGG 1 cut(s) 636
BmsI GCATC 2 cut(s) 590, 749
BpmI CTGGAG 1 cut(s) 366
Bpu1102I GCTNAGC 1 cut(s) 630
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 339, 369
Bse21I CCTNAGG 2 cut(s) 498, 591
Bse3DI GCAATG 2 cut(s) 142, 201
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 325, 388
BseJI GATNNNNATC 1 cut(s) 612
BseMI GCAATG 2 cut(s) 142, 201
BseMII CTCAG 4 cut(s) 489, 532, 605, 621
BseRI GAGGAG 2 cut(s) 506, 515
BseXI GCAGC 2 cut(s) 193, 353
Bsh1236I CGCG 5 cut(s) 809, 828, 875, 908, 927
BshFI GGCC 1 cut(s) 263
BshNI GGYRCC 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 461
BslFI GGGAC 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 2 cut(s) 197, 659
BsnI GGCC 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 461
Bsp143I GATC 5 cut(s) 56, 358, 396, 572, 613
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 378
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 4 cut(s) 490, 531, 604, 622
BspFNI CGCG 5 cut(s) 809, 828, 875, 908, 927
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 140, 407, 478
BspPI GGATC 2 cut(s) 51, 580
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 2 cut(s) 142, 201
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 5 cut(s) 56, 358, 396, 572, 613
BssSI CACGAG 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 378
Bst2BI CACGAG 1 cut(s) 460
Bst2UI CCWGG 1 cut(s) 636
Bst4CI ACNGT 3 cut(s) 90, 622, 901
Bst6I CTCTTC 1 cut(s) 683
BstAPI GCANNNNNTGC 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 229, 244
BstDEI CTNAG 4 cut(s) 498, 518, 591, 630
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 325, 388
BstFNI CGCG 5 cut(s) 809, 828, 875, 908, 927
BstHHI GCGC 5 cut(s) 809, 830, 875, 908, 929
BstKTI GATC 5 cut(s) 59, 361, 399, 575, 616
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 5 cut(s) 56, 358, 396, 572, 613
BstMWI GCNNNNNNNGC 4 cut(s) 203, 212, 269, 656
BstNI CCWGG 1 cut(s) 636
BstNSI RCATGY 2 cut(s) 527, 600
BstSCI CCNGG 1 cut(s) 634
BstUI CGCG 5 cut(s) 809, 828, 875, 908, 927
BstV1I GCAGC 2 cut(s) 193, 353
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
Bsu36I CCTNAGG 2 cut(s) 498, 591
BsuRI GGCC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 2 cut(s) 325, 388
Cac8I GCNNGC 2 cut(s) 229, 244
CaiI CAGNNNCTG 1 cut(s) 611
CciI TCATGA 1 cut(s) 126
CfoI GCGC 5 cut(s) 809, 830, 875, 908, 929
Cfr13I GGNCC 1 cut(s) 477
Csp6I GTAC 2 cut(s) 325, 443
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 8 cut(s) 127, 188, 275, 312, 379, 524, 566, 597
CviQI GTAC 2 cut(s) 325, 443
DdeI CTNAG 4 cut(s) 498, 518, 591, 630
DpnI GATC 5 cut(s) 58, 360, 398, 574, 615
DpnII GATC 5 cut(s) 56, 358, 396, 572, 613
DraIII CACNNNGTG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Ecl136II GAGCTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 1 cut(s) 461
Eco47I GGWCC 1 cut(s) 477
Eco53kI GAGCTC 1 cut(s) 459
Eco81I CCTNAGG 2 cut(s) 498, 591
EcoICRI GAGCTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 8 cut(s) 130, 191, 278, 315, 382, 527, 569, 600
FaqI GGGAC 1 cut(s) 490
FatI CATG 8 cut(s) 126, 187, 274, 311, 378, 523, 565, 596
FbaI TGATCA 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 207, 342
FokI GGATG 2 cut(s) 332, 395
FriOI GRGCYC 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 207, 342
FspBI CTAG 1 cut(s) 536
GlaI GCGC 5 cut(s) 808, 829, 874, 907, 928
GluI GCNGC 2 cut(s) 207, 342
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 263
HhaI GCGC 5 cut(s) 809, 830, 875, 908, 929
Hin1II CATG 8 cut(s) 130, 191, 278, 315, 382, 527, 569, 600
Hin6I GCGC 5 cut(s) 807, 828, 873, 906, 927
HinP1I GCGC 5 cut(s) 807, 828, 873, 906, 927
HindIII AAGCTT 1 cut(s) 229
HinfI GANTC 5 cut(s) 11, 348, 374, 608, 775
HphI GGTGA 2 cut(s) 634, 787
Hpy188I TCNGA 7 cut(s) 56, 435, 521, 586, 607, 613, 618
Hpy188III TCNNGA 4 cut(s) 101, 127, 253, 475
Hpy99I CGWCG 4 cut(s) 814, 847, 880, 913
HpyAV CCTTC 4 cut(s) 33, 158, 175, 633
HpyCH4III ACNGT 3 cut(s) 90, 622, 901
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 9 cut(s) 197, 209, 227, 315, 341, 527, 659, 674, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 212, 269, 656
HpyF3I CTNAG 4 cut(s) 498, 518, 591, 630
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 8 cut(s) 130, 191, 278, 315, 382, 527, 569, 600
HspAI GCGC 5 cut(s) 807, 828, 873, 906, 927
Ksp22I TGATCA 1 cut(s) 396
Kzo9I GATC 5 cut(s) 56, 358, 396, 572, 613
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 9 cut(s) 86, 207, 256, 330, 337, 510, 578, 621, 648
Lsp1109I GCAGC 2 cut(s) 193, 353
LweI GCATC 2 cut(s) 590, 749
MaeI CTAG 1 cut(s) 536
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 182
MalI GATC 5 cut(s) 58, 360, 398, 574, 615
MboI GATC 5 cut(s) 56, 358, 396, 572, 613
MboII GAAGA 1 cut(s) 700
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 461
MluCI AATT 4 cut(s) 294, 482, 555, 744
MlyI GAGTC 2 cut(s) 357, 368
MnlI CCTC 9 cut(s) 134, 253, 422, 493, 496, 527, 600, 690, 792
MseI TTAA 3 cut(s) 332, 542, 937
MspA1I CMGCKG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 636
Mva1269I GAATGC 2 cut(s) 197, 659
MvaI CCWGG 1 cut(s) 636
MvnI CGCG 5 cut(s) 809, 828, 875, 908, 927
MwoI GCNNNNNNNGC 4 cut(s) 203, 212, 269, 656
NcoI CCATGG 1 cut(s) 378
NdeII GATC 5 cut(s) 56, 358, 396, 572, 613
NlaIII CATG 8 cut(s) 130, 191, 278, 315, 382, 527, 569, 600
NlaIV GGNNCC 3 cut(s) 140, 407, 478
NspI RCATGY 2 cut(s) 527, 600
PagI TCATGA 1 cut(s) 126
PctI GAATGC 2 cut(s) 197, 659
PfeI GAWTC 3 cut(s) 11, 608, 775
PkrI GCNGC 2 cut(s) 208, 343
PleI GAGTC 2 cut(s) 356, 368
PpsI GAGTC 2 cut(s) 356, 368
Psp124BI GAGCTC 1 cut(s) 461
Psp6I CCWGG 1 cut(s) 634
PspGI CCWGG 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 140, 407, 478
PspPI GGNCC 1 cut(s) 477
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 326, 444
RsaNI GTAC 2 cut(s) 325, 443
SacI GAGCTC 1 cut(s) 461
SaqAI TTAA 3 cut(s) 332, 542, 937
SatI GCNGC 2 cut(s) 207, 342
Sau3AI GATC 5 cut(s) 56, 358, 396, 572, 613
Sau96I GGNCC 1 cut(s) 477
SchI GAGTC 2 cut(s) 357, 368
ScrFI CCNGG 1 cut(s) 636
SduI GDGCHC 1 cut(s) 461
SfaNI GCATC 2 cut(s) 590, 749
SinI GGWCC 1 cut(s) 477
Sse9I AATT 4 cut(s) 294, 482, 555, 744
SspMI CTAG 1 cut(s) 536
SstI GAGCTC 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 634
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 3 cut(s) 90, 622, 901
TaiI ACGT 1 cut(s) 99
TaqI TCGA 4 cut(s) 252, 357, 575, 842
TasI AATT 4 cut(s) 294, 482, 555, 744
TfiI GAWTC 3 cut(s) 11, 608, 775
Tru1I TTAA 3 cut(s) 332, 542, 937
Tru9I TTAA 3 cut(s) 332, 542, 937
TseI GCWGC 2 cut(s) 206, 341
TspDTI ATGAA 4 cut(s) 143, 190, 399, 459
VpaK11BI GGWCC 1 cut(s) 477
XapI RAATTY 2 cut(s) 482, 555
XceI RCATGY 2 cut(s) 527, 600
XspI CTAG 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.