Rroxscaffold_6G00396250

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000734
Physical Location & Seq
Reverse (-)
17576765 .. 17582904
6140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00396250.1

Sequence Viewer

Length: 1491 bp
ATGGAACAAATAAACTTCATGACTACAATAGAAAACTATGAAGGACATCTTTATATAGGCATCCTACAAACAATTAATGCATGTGTGAATGCATTAAGTGCAGCAGCCATCCTACAAACAATTAATGCATGTGTGAATGCATTAAGTGCAGCAGCAACCAACAATGTTGACAAAGAACCAATGTTGACAGCAAACAAATACAACATCACCAGCATGGAGTCGTGGGATGTAAAGAGACTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGACCAATAACGGGCTGGGTGATGATGAATATTTCATTCAGAAAATCATTTCGACTATCAAGAAACTGCAGCCAAGTGAGGAAGCATTTTACGTGCTGGATTTGGGTCTTGTAAGCAACCTCATGGACACATGGAAACGTAACCTTCCAATGGTCCAACCTTTCTACGCCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCTCCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCGCATCATCTATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACCTAACCACTTTTGACTCGGTAGATGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCGGACGAGAGTGGGTGCAATTGGCCACTGGGTTCCAAGTTCGGTGCACTCCCTGAAGAAGTGTCTCCGCTCCTCCAAGCCGCTCAAACTGCAGGACTCAGAGTAGCTGGGGTTTCATTTCACATAGGAAGTAAGTCCTACAATTTTCAAGCATACAAAACAGCCATAGAGGCAGCTAAAGTGGTTTTCCAGGAGGCGGCTAGGCTCTGTATGCCTCACATGCATGTGTTGGACATTGGCGGTGGCTTCGTGTCCGAGCCATCGTTCTTTGAAGCTGCGGCAGCAGCCGTGAAAACCTCTGTGGAGACCTATTTTTCAGAGGAGGAGCGACGCAGCTTGAAGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCTCGCTTGTCACCAGCATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACAATACTGGATCAACGAAGGGTTTTATGGGTCCATGATGTTTGTGGACCCTAAAACCCTACTTGAATCCTGCATTGCTCTGAAATGCATGGACAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTCTGTGGCAAAGCTACTGGCTGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCAACCTGTGATTCAGCTGACAAGGTGTTGGAGGGTAACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTTGGCGTGTAGCAGCCACTTCAATGGTTTTGGCTCCGCCAAGATCACCCATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

496

Amino Acids

54.19

Weight (kDa)

5.51

Isoelectric Point (pI)

46.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 121 - 473 2.1e-12 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 128 - 361 1.2e-68 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 675
AccBSI CCGCTC 2 cut(s) 781, 794
AccIII TCCGGA 2 cut(s) 553, 712
AciI CCGC 8 cut(s) 700, 779, 792, 908, 951, 989, 1089, 1464
AclWI GGATC 4 cut(s) 564, 658, 691, 1160
AcoI YGGCCR 1 cut(s) 734
AcuI CTGAAG 2 cut(s) 633, 786
AfaI GTAC 1 cut(s) 605
AfiI CCNNNNNNNGG 3 cut(s) 282, 421, 907
AgsI TTSAA 8 cut(s) 242, 495, 659, 860, 983, 1051, 1208, 1450
AjnI CCWGG 2 cut(s) 900, 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 1324, 1356
Alw21I GWGCWC 3 cut(s) 259, 760, 1303
Alw26I GTCTC 4 cut(s) 229, 780, 1010, 1079
Alw44I GTGCAC 2 cut(s) 255, 756
AlwI GGATC 4 cut(s) 564, 658, 691, 1160
Aor13HI TCCGGA 2 cut(s) 553, 712
AoxI GGCC 1 cut(s) 734
ApaLI GTGCAC 2 cut(s) 255, 756
AseI ATTAAT 2 cut(s) 75, 123
AspS9I GGNCC 4 cut(s) 424, 1173, 1189, 1328
AsuHPI GGTGA 6 cut(s) 199, 302, 1066, 1096, 1399, 1465
AsuNHI GCTAGC 1 cut(s) 587
AvaII GGWCC 4 cut(s) 424, 1173, 1189, 1328
BaeGI GKGCMC 2 cut(s) 259, 760
BalI TGGCCA 1 cut(s) 736
BanI GGYRCC 1 cut(s) 675
Bbv12I GWGCWC 3 cut(s) 259, 760, 1303
BccI CCATC 5 cut(s) 116, 979, 1241, 1267, 1485
BceAI ACGGC 2 cut(s) 425, 983
BciT130I CCWGG 2 cut(s) 902, 1068
BcoDI GTCTC 4 cut(s) 229, 780, 1010, 1079
BfaI CTAG 2 cut(s) 588, 912
BfmI CTRYAG 2 cut(s) 338, 801
BglI GCCNNNNNGGC 1 cut(s) 881
Bme1390I CCNGG 2 cut(s) 902, 1068
Bme18I GGWCC 4 cut(s) 424, 1173, 1189, 1328
BmgT120I GGNCC 4 cut(s) 424, 1173, 1189, 1328
BmiI GGNNCC 5 cut(s) 677, 745, 1174, 1191, 1462
BmrFI CCNGG 2 cut(s) 902, 1068
BmrI ACTGGG 1 cut(s) 749
BmsI GCATC 5 cut(s) 69, 570, 711, 1119, 1260
BmtI GCTAGC 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 749
BpmI CTGGAG 1 cut(s) 1403
BpuEI CTTGAG 1 cut(s) 471
BsaAI YACGTR 1 cut(s) 364
BsaBI GATNNNNATC 1 cut(s) 701
BsaI GGTCTC 2 cut(s) 1010, 1079
BsaJI CCNNGG 1 cut(s) 477
BsaWI WCCGGW 2 cut(s) 553, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 282, 421, 907
Bse1I ACTGG 6 cut(s) 744, 1154, 1265, 1297, 1369, 1386
Bse3DI GCAATG 1 cut(s) 1215
Bse8I GATNNNNATC 1 cut(s) 701
BseAI TCCGGA 2 cut(s) 553, 712
BseBI CCWGG 2 cut(s) 902, 1068
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 3 cut(s) 60, 108, 232
BseJI GATNNNNATC 1 cut(s) 701
BseLI CCNNNNNNNGG 3 cut(s) 282, 421, 907
BseMI GCAATG 1 cut(s) 1215
BseMII CTCAG 2 cut(s) 510, 823
BseNI ACTGG 6 cut(s) 744, 1154, 1265, 1297, 1369, 1386
BseRI GAGGAG 4 cut(s) 458, 773, 1046, 1049
BseSI GKGCMC 2 cut(s) 259, 760
BseYI CCCAGC 2 cut(s) 286, 818
BsgI GTGCAG 2 cut(s) 120, 168
BshFI GGCC 1 cut(s) 736
BshNI GGYRCC 1 cut(s) 675
BsiHKAI GWGCWC 3 cut(s) 259, 760, 1303
BsiSI CCGG 2 cut(s) 554, 713
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 3 cut(s) 282, 421, 907
BsmAI GTCTC 4 cut(s) 229, 780, 1010, 1079
BsmFI GGGAC 1 cut(s) 498
BsmI GAATGC 2 cut(s) 94, 142
BsnI GGCC 1 cut(s) 736
Bso31I GGTCTC 2 cut(s) 1010, 1079
Bsp1286I GDGCHC 3 cut(s) 259, 760, 1303
Bsp13I TCCGGA 2 cut(s) 553, 712
Bsp143I GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
BspACI CCGC 8 cut(s) 700, 779, 792, 908, 951, 989, 1089, 1464
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 2 cut(s) 511, 822
BspEI TCCGGA 2 cut(s) 553, 712
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 5 cut(s) 677, 745, 1174, 1191, 1462
BspMAI CTGCAG 2 cut(s) 342, 805
BspOI GCTAGC 1 cut(s) 591
BspPI GGATC 4 cut(s) 564, 658, 691, 1160
BspT107I GGYRCC 1 cut(s) 675
BspTNI GGTCTC 2 cut(s) 1010, 1079
BsrBI CCGCTC 2 cut(s) 781, 794
BsrDI GCAATG 1 cut(s) 1215
BsrI ACTGG 6 cut(s) 744, 1154, 1265, 1297, 1369, 1386
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 902, 1068
Bst4CI ACNGT 4 cut(s) 506, 1244, 1313, 1321
BstAPI GCANNNNNTGC 2 cut(s) 98, 146
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 589, 1303
BstDEI CTNAG 2 cut(s) 519, 809
BstEII GGTNACC 1 cut(s) 1364
BstF5I GGATG 3 cut(s) 60, 108, 232
BstKTI GATC 6 cut(s) 265, 559, 666, 699, 1155, 1473
BstMAI GTCTC 4 cut(s) 229, 780, 1010, 1079
BstMBI GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
BstNI CCWGG 2 cut(s) 902, 1068
BstNSI RCATGY 4 cut(s) 84, 132, 934, 938
BstPI GGTNACC 1 cut(s) 1364
BstSCI CCNGG 2 cut(s) 900, 1066
BstSFI CTRYAG 2 cut(s) 338, 801
BstSLI GKGCMC 2 cut(s) 259, 760
BstX2I RGATCY 1 cut(s) 663
BstXI CCANNNNNNTGG 1 cut(s) 1451
BstYI RGATCY 1 cut(s) 663
BsuRI GGCC 1 cut(s) 736
BtsCI GGATG 3 cut(s) 60, 108, 232
BtsIMutI CAGTG 2 cut(s) 737, 1249
Cac8I GCNNGC 2 cut(s) 589, 1303
CciI TCATGA 1 cut(s) 18
Cfr13I GGNCC 4 cut(s) 424, 1173, 1189, 1328
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 1 cut(s) 604
CviQI GTAC 1 cut(s) 604
DdeI CTNAG 2 cut(s) 519, 809
DpnI GATC 6 cut(s) 264, 558, 665, 698, 1154, 1472
DpnII GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
EaeI YGGCCR 1 cut(s) 734
EciI GGCGGA 1 cut(s) 1453
Eco130I CCWWGG 1 cut(s) 477
Eco31I GGTCTC 2 cut(s) 1010, 1079
Eco47I GGWCC 4 cut(s) 424, 1173, 1189, 1328
Eco57I CTGAAG 2 cut(s) 633, 786
Eco91I GGTNACC 1 cut(s) 1364
EcoO65I GGTNACC 1 cut(s) 1364
EcoRII CCWGG 2 cut(s) 900, 1066
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 6 cut(s) 82, 94, 130, 142, 936, 1232
ErhI CCWWGG 1 cut(s) 477
FalI AAGNNNNNCTT 2 cut(s) 33, 65
FaqI GGGAC 1 cut(s) 498
FokI GGATG 3 cut(s) 47, 95, 239
FspBI CTAG 2 cut(s) 588, 912
GsaI CCCAGC 2 cut(s) 290, 822
GsuI CTGGAG 1 cut(s) 1403
HaeIII GGCC 1 cut(s) 736
HapII CCGG 2 cut(s) 554, 713
HgaI GACGC 1 cut(s) 1050
HincII GTYRAC 3 cut(s) 169, 186, 625
HindII GTYRAC 3 cut(s) 169, 186, 625
HinfI GANTC 8 cut(s) 218, 463, 527, 641, 807, 1208, 1261, 1340
HpaI GTTAAC 1 cut(s) 625
HpaII CCGG 2 cut(s) 554, 713
HphI GGTGA 6 cut(s) 199, 302, 1066, 1096, 1399, 1465
Hpy166II GTNNAC 6 cut(s) 169, 186, 257, 625, 758, 1189
Hpy188I TCNGA 9 cut(s) 312, 520, 545, 668, 812, 967, 1030, 1142, 1224
Hpy188III TCNNGA 8 cut(s) 19, 271, 331, 554, 713, 1117, 1255, 1270
Hpy8I GTNNAC 6 cut(s) 169, 186, 257, 625, 758, 1189
Hpy99I CGWCG 1 cut(s) 1044
HpyAV CCTTC 4 cut(s) 35, 425, 1045, 1154
HpyCH4III ACNGT 4 cut(s) 506, 1244, 1313, 1321
HpyCH4IV ACGT 3 cut(s) 363, 409, 1427
HpyF3I CTNAG 2 cut(s) 519, 809
HpySE526I ACGT 3 cut(s) 363, 409, 1427
Kpn2I TCCGGA 2 cut(s) 553, 712
KspAI GTTAAC 1 cut(s) 625
Kzo9I GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
LmnI GCTCC 4 cut(s) 715, 786, 1036, 1466
LweI GCATC 5 cut(s) 69, 570, 711, 1119, 1260
MaeI CTAG 2 cut(s) 588, 912
MaeII ACGT 3 cut(s) 363, 409, 1427
MaeIII GTNAC 5 cut(s) 271, 410, 1102, 1364, 1371
MalI GATC 6 cut(s) 264, 558, 665, 698, 1154, 1472
MbiI CCGCTC 2 cut(s) 781, 794
MboI GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
MboII GAAGA 2 cut(s) 779, 1270
MfeI CAATTG 1 cut(s) 730
MflI RGATCY 1 cut(s) 663
MhlI GDGCHC 3 cut(s) 259, 760, 1303
MlsI TGGCCA 1 cut(s) 736
MluCI AATT 6 cut(s) 72, 120, 730, 853, 1393, 1486
MluNI TGGCCA 1 cut(s) 736
MlyI GAGTC 4 cut(s) 227, 536, 635, 801
MmeI TCCRAC 4 cut(s) 451, 921, 1338, 1355
Mox20I TGGCCA 1 cut(s) 736
Mph1103I ATGCAT 6 cut(s) 82, 94, 130, 142, 936, 1232
MroI TCCGGA 2 cut(s) 553, 712
MscI TGGCCA 1 cut(s) 736
MseI TTAA 6 cut(s) 75, 95, 123, 143, 624, 1489
MslI CAYNNNNRTG 4 cut(s) 212, 933, 935, 1449
Msp20I TGGCCA 1 cut(s) 736
MspA1I CMGCKG 1 cut(s) 1346
MspI CCGG 2 cut(s) 554, 713
MspR9I CCNGG 2 cut(s) 902, 1068
MunI CAATTG 1 cut(s) 730
Mva1269I GAATGC 2 cut(s) 94, 142
MvaI CCWGG 2 cut(s) 902, 1068
NdeII GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
NheI GCTAGC 1 cut(s) 587
NlaIV GGNNCC 5 cut(s) 677, 745, 1174, 1191, 1462
NmeAIII GCCGAG 1 cut(s) 1087
NmuCI GTSAC 2 cut(s) 271, 1102
NsiI ATGCAT 6 cut(s) 82, 94, 130, 142, 936, 1232
NspI RCATGY 4 cut(s) 84, 132, 934, 938
PagI TCATGA 1 cut(s) 18
PctI GAATGC 2 cut(s) 94, 142
PfeI GAWTC 4 cut(s) 463, 1208, 1261, 1340
PfoI TCCNGGA 1 cut(s) 900
PleI GAGTC 4 cut(s) 226, 535, 635, 801
PpsI GAGTC 4 cut(s) 226, 535, 635, 801
Ppu21I YACGTR 1 cut(s) 364
PshBI ATTAAT 2 cut(s) 75, 123
Psp6I CCWGG 2 cut(s) 900, 1066
PspEI GGTNACC 1 cut(s) 1364
PspFI CCCAGC 2 cut(s) 286, 818
PspGI CCWGG 2 cut(s) 900, 1066
PspN4I GGNNCC 5 cut(s) 677, 745, 1174, 1191, 1462
PspPI GGNCC 4 cut(s) 424, 1173, 1189, 1328
PstI CTGCAG 2 cut(s) 342, 805
PsuI RGATCY 1 cut(s) 663
PvuII CAGCTG 1 cut(s) 1346
RsaI GTAC 1 cut(s) 605
RsaNI GTAC 1 cut(s) 604
RseI CAYNNNNRTG 4 cut(s) 212, 933, 935, 1449
SaqAI TTAA 6 cut(s) 75, 95, 123, 143, 624, 1489
Sau3AI GATC 6 cut(s) 262, 556, 663, 696, 1152, 1470
Sau96I GGNCC 4 cut(s) 424, 1173, 1189, 1328
SchI GAGTC 4 cut(s) 227, 536, 635, 801
ScrFI CCNGG 2 cut(s) 902, 1068
SduI GDGCHC 3 cut(s) 259, 760, 1303
SfaNI GCATC 5 cut(s) 69, 570, 711, 1119, 1260
SfcI CTRYAG 2 cut(s) 338, 801
SinI GGWCC 4 cut(s) 424, 1173, 1189, 1328
SmiMI CAYNNNNRTG 4 cut(s) 212, 933, 935, 1449
SmlI CTYRAG 1 cut(s) 486
SmoI CTYRAG 1 cut(s) 486
Sse9I AATT 6 cut(s) 72, 120, 730, 853, 1393, 1486
SsiI CCGC 8 cut(s) 700, 779, 792, 908, 951, 989, 1089, 1464
SspI AATATT 1 cut(s) 302
SspMI CTAG 2 cut(s) 588, 912
StyD4I CCNGG 2 cut(s) 900, 1066
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 4 cut(s) 506, 1244, 1313, 1321
TaiI ACGT 3 cut(s) 366, 412, 1430
TaqI TCGA 4 cut(s) 323, 501, 1254, 1316
TasI AATT 6 cut(s) 72, 120, 730, 853, 1393, 1486
TauI GCSGC 3 cut(s) 794, 911, 992
TfiI GAWTC 4 cut(s) 463, 1208, 1261, 1340
Tru1I TTAA 6 cut(s) 75, 95, 123, 143, 624, 1489
Tru9I TTAA 6 cut(s) 75, 95, 123, 143, 624, 1489
TscAI CASTG 2 cut(s) 744, 1249
TseFI GTSAC 2 cut(s) 271, 1102
Tsp45I GTSAC 2 cut(s) 271, 1102
TspDTI ATGAA 5 cut(s) 7, 54, 295, 312, 816
TspRI CASTG 2 cut(s) 744, 1249
VneI GTGCAC 2 cut(s) 255, 756
VpaK11BI GGWCC 4 cut(s) 424, 1173, 1189, 1328
VspI ATTAAT 2 cut(s) 75, 123
XceI RCATGY 4 cut(s) 84, 132, 934, 938
XcmI CCANNNNNNNNNTGG 2 cut(s) 283, 1183
XspI CTAG 2 cut(s) 588, 912
Zsp2I ATGCAT 6 cut(s) 82, 94, 130, 142, 936, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.