Rh3AG292400

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000734
Physical Location & Seq
Reverse (-)
35345701 .. 35349101
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG292400.1

Sequence Viewer

Length: 354 bp
ATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCCATGCATTGTGCTTTGTAGCTGCGGCAACAGCCGTGAAAACTGCCGTGGAAAAGTACTTTTCAAAAGTGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCATCATAAGTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTACCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATTTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

117

Amino Acids

12.95

Weight (kDa)

8.52

Isoelectric Point (pI)

30.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 1 - 51 1.8e-06 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 234
AccB1I GGYRCC 1 cut(s) 234
AccII CGCG 1 cut(s) 255
AciI CCGC 3 cut(s) 21, 59, 152
AclWI GGATC 2 cut(s) 230, 267
AcoI YGGCCR 1 cut(s) 129
AfaI GTAC 3 cut(s) 92, 236, 265
AfeI AGCGCT 1 cut(s) 270
AgsI TTSAA 3 cut(s) 13, 99, 278
AjnI CCWGG 1 cut(s) 337
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 230, 267
Aor51HI AGCGCT 1 cut(s) 270
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 234
AspLEI GCGC 2 cut(s) 255, 271
AsuC2I CCSGG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 138
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 121, 185
BceAI ACGGC 3 cut(s) 53, 65, 174
BciT130I CCWGG 1 cut(s) 339
BcnI CCSGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 2 cut(s) 57, 60
BlsI GCNGC 2 cut(s) 58, 61
BmcAI AGTACT 1 cut(s) 92
Bme1390I CCNGG 2 cut(s) 138, 339
BmiI GGNNCC 2 cut(s) 236, 244
BmrFI CCNGG 2 cut(s) 138, 339
BmsI GCATC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 81, 238, 337
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 339
BseDI CCNNGG 3 cut(s) 81, 238, 337
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 1 cut(s) 234
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 222, 259
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 3 cut(s) 21, 59, 152
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 236, 244
BspPI GGATC 2 cut(s) 230, 267
BspT107I GGYRCC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 81, 238, 337
BssMI GATC 2 cut(s) 222, 259
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 339
Bst4CI ACNGT 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 171
BstDSI CCRYGG 2 cut(s) 81, 238
BstFNI CGCG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 2 cut(s) 255, 271
BstKTI GATC 2 cut(s) 225, 262
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 222, 259
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 65, 158
BstNI CCWGG 1 cut(s) 339
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 136, 337
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 2 cut(s) 81, 238
Cac8I GCNNGC 1 cut(s) 171
CfoI GCGC 2 cut(s) 255, 271
Csp6I GTAC 3 cut(s) 91, 235, 264
CviAII CATG 4 cut(s) 5, 38, 239, 247
CviJI RGCY 7 cut(s) 27, 56, 68, 131, 136, 161, 243
CviKI_1 RGCY 7 cut(s) 27, 56, 68, 131, 136, 161, 243
CviQI GTAC 3 cut(s) 91, 235, 264
DpnI GATC 2 cut(s) 224, 261
DpnII GATC 2 cut(s) 222, 259
EaeI YGGCCR 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 138
Eco47III AGCGCT 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 3 cut(s) 6, 43, 302
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 238
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 4 cut(s) 8, 41, 242, 250
FaiI YATR 6 cut(s) 6, 39, 182, 240, 248, 347
FaqI GGGAC 1 cut(s) 19
FatI CATG 4 cut(s) 4, 37, 238, 246
Fnu4HI GCNGC 2 cut(s) 57, 60
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 57, 60
FspBI CTAG 1 cut(s) 272
GlaI GCGC 2 cut(s) 254, 270
GluI GCNGC 2 cut(s) 57, 60
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 138
HhaI GCGC 2 cut(s) 255, 271
Hin1II CATG 4 cut(s) 8, 41, 242, 250
Hin6I GCGC 2 cut(s) 253, 269
HinP1I GCGC 2 cut(s) 253, 269
HinfI GANTC 1 cut(s) 278
HpaII CCGG 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 212, 294
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 1 cut(s) 314
HpyCH4V TGCA 4 cut(s) 4, 41, 285, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 158
Hsp92II CATG 4 cut(s) 8, 41, 242, 250
HspAI GCGC 2 cut(s) 253, 269
KpnI GGTACC 1 cut(s) 238
Kzo9I GATC 2 cut(s) 222, 259
LmnI GCTCC 2 cut(s) 106, 248
LpnPI CCDG 3 cut(s) 151, 205, 324
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 240
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 224, 261
MboI GATC 2 cut(s) 222, 259
MboII GAAGA 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 138
MnlI CCTC 2 cut(s) 194, 199
Mph1103I ATGCAT 3 cut(s) 6, 43, 302
MseI TTAA 1 cut(s) 119
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 2 cut(s) 138, 339
MvaI CCWGG 1 cut(s) 339
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 65, 158
NciI CCSGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 238
NdeII GATC 2 cut(s) 222, 259
NlaIII CATG 4 cut(s) 8, 41, 242, 250
NlaIV GGNNCC 2 cut(s) 236, 244
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 317
NsiI ATGCAT 3 cut(s) 6, 43, 302
NspI RCATGY 1 cut(s) 8
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 58, 61
Psp6I CCWGG 1 cut(s) 337
PspGI CCWGG 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 236, 244
RsaI GTAC 3 cut(s) 92, 236, 265
RsaNI GTAC 3 cut(s) 91, 235, 264
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 2 cut(s) 57, 60
Sau3AI GATC 2 cut(s) 222, 259
ScaI AGTACT 1 cut(s) 92
ScrFI CCNGG 2 cut(s) 138, 339
SduI GDGCHC 1 cut(s) 138
SetI ASST 2 cut(s) 58, 210
SfaNI GCATC 1 cut(s) 240
SsiI CCGC 3 cut(s) 21, 59, 152
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 136, 337
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 314
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 317
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XspI CTAG 1 cut(s) 272
ZrmI AGTACT 1 cut(s) 92
Zsp2I ATGCAT 3 cut(s) 6, 43, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.