Rh7BG101100

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000734
Physical Location & Seq
Forward (+)
7522019 .. 7522279
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG101100.1

Sequence Viewer

Length: 261 bp
ATGTCCAATAACAGTGACGACATCGAGAAGAATCCAGTCTTGAAAGTATGTGACAAAGGTACTGGGGGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCGACATCTGATCCGGCTGACAAGGTGTTGGAGGGTGACCAGCTACCAGAACTTGAGGTGAATGATTGGCTGGTGTTTCGAAACATGGGAGCTTATACGTCGGCGCGTAGCAGCAATTTTAATGGTTTTGGCTCCGCTAAGATCACCTACCTTACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

86

Amino Acids

9.33

Weight (kDa)

4.89

Isoelectric Point (pI)

28.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 21 - 63 2.5e-08 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 205
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 104
AfaI GTAC 1 cut(s) 61
AgsI TTSAA 1 cut(s) 43
AluBI AGCT 2 cut(s) 142, 191
AluI AGCT 2 cut(s) 142, 191
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 146, 169, 235
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 222
BisI GCNGC 1 cut(s) 211
BlsI GCNGC 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 35, 67
BseNI ACTGG 2 cut(s) 35, 67
BseXI GCAGC 1 cut(s) 222
Bsh1236I CGCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 109, 240
BspACI CCGC 1 cut(s) 234
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 232
BspPI GGATC 1 cut(s) 104
BspT104I TTCGAA 1 cut(s) 178
BsrI ACTGG 2 cut(s) 35, 67
BssMI GATC 2 cut(s) 109, 240
Bst4CI ACNGT 3 cut(s) 14, 83, 91
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 237
BstEII GGTNACC 1 cut(s) 134
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 2 cut(s) 112, 243
BstMBI GATC 2 cut(s) 109, 240
BstPI GGTNACC 1 cut(s) 134
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 60
CviAII CATG 1 cut(s) 184
CviJI RGCY 5 cut(s) 116, 142, 169, 191, 231
CviKI_1 RGCY 5 cut(s) 116, 142, 169, 191, 231
CviQI GTAC 1 cut(s) 60
DdeI CTNAG 1 cut(s) 237
DpnI GATC 2 cut(s) 111, 242
DpnII GATC 2 cut(s) 109, 240
Eco47I GGWCC 1 cut(s) 98
Eco91I GGTNACC 1 cut(s) 134
EcoO65I GGTNACC 1 cut(s) 134
FaeI CATG 1 cut(s) 187
FaiI YATR 3 cut(s) 49, 185, 195
FatI CATG 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 211
GlaI GCGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 211
HapII CCGG 1 cut(s) 113
HhaI GCGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 187
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 113
HphI GGTGA 3 cut(s) 146, 169, 235
Hpy188I TCNGA 2 cut(s) 102, 109
Hpy188III TCNNGA 2 cut(s) 25, 40
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 3 cut(s) 14, 83, 91
HpyCH4IV ACGT 1 cut(s) 197
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 187
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 109, 240
LmnI GCTCC 2 cut(s) 188, 236
LpnPI CCDG 6 cut(s) 48, 48, 126, 152, 155, 159
Lsp1109I GCAGC 1 cut(s) 222
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 14, 50, 134
MalI GATC 2 cut(s) 111, 242
MboI GATC 2 cut(s) 109, 240
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 214
MmeI TCCRAC 2 cut(s) 108, 125
MnlI CCTC 2 cut(s) 124, 148
MseI TTAA 1 cut(s) 219
MspI CCGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 205
NdeII GATC 2 cut(s) 109, 240
NlaIII CATG 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 14, 50, 134
NspV TTCGAA 1 cut(s) 178
PfeI GAWTC 1 cut(s) 31
PkrI GCNGC 1 cut(s) 212
PspEI GGTNACC 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 232
PspPI GGNCC 1 cut(s) 98
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 211
Sau3AI GATC 2 cut(s) 109, 240
Sau96I GGNCC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 73
SetI ASST 8 cut(s) 61, 126, 144, 159, 193, 200, 248, 252
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 214
SsiI CCGC 1 cut(s) 234
TaaI ACNGT 3 cut(s) 14, 83, 91
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 24, 86, 178
TasI AATT 1 cut(s) 214
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 3 cut(s) 14, 50, 134
TseI GCWGC 1 cut(s) 210
Tsp45I GTSAC 3 cut(s) 14, 50, 134
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.