Rh3DG301100

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000734
Physical Location & Seq
Forward (+)
31732369 .. 31735806
3438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG301100.1

Sequence Viewer

Length: 1290 bp
ATGTTCACCAGCGTGGAGTCGTGGAATGTAAAGATCCTTGAAGCCCTACCAAGTGCACCAGATCAGGTCGTGACCAATAACAGGCTGGGTGATGATGAATATTTCATTCAGAAAATCATTTCGACGATCAAGAAACTGCAGCCAAGTGAGGAAGCATTTTACGTTCTGGATTTGGGTCTTGTAAGCAACCTCATGGACACATGGAAACGTAACCTTCCAATGGTCCAATCTTTCTACGCCGTCAAGTGCAACCCACACCCGGATCTCCTCGCCACCTTGGCGGCTCAAGGTTCAAGTTTCGACTGTGGAAGTCCGTCTGAGATTGAGTCCATTTTAGCTCTTGGAGTTTCTCCGGATCGCATCATCTATGCTAATCCTTGCAAAGCTAGCTCTCACATCCAGTACGCTGCTGAAGTTGGCGTTAACGTAACCACTTTTGACTCGGTAGATGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGCATCAAAGCTCCTGACGAGAGTGGATGCAGCTTCCCACTGAGTTCCAAGTTCGGAGCTCTCCCTGAAGAAGTGTCTTTGCTCCTCCAAGCCGCTCAAACTGCAGGACTCAGAGTAACTGGGGTTTCATTTCACATAGGAAGTAAGTCCTACAATTTTCAAGCATACAAAACAGCCATAGAGGCAGCTAAGAAGGTTTTCCAGGAGGCGGCTAGGCTCTGTATGCCTCCCATGCATGTGTTGGACATTGGCGGTGGCTTCGTGTCCGAGCCATCGTTCTTTGAAGCTGCGGCAGCAGTCGTGAAAACCTCTGTGGAGACCTATTTTTCAGAGGAGGAGCGACGCAGCTTGAAGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGCGGTCAGACAATACTGGATCAACGAAGGGTTTTTTGGGTCCATGATGTGTGCGGACCCTAAAACCCTACTTGAATCCTGCATTGCTCTGAAATGCATGTACAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTCTGTGGCAAAGCTACTGGCTCTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCGACGTGTGATTCGGCTGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTCGGCGTGTGGCAGCCACTTCAATGGTTTTGGCTCCGCCAAGATCACCCATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

429

Amino Acids

46.9

Weight (kDa)

5.76

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 54 - 406 3.2e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 61 - 294 3.5e-69 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 474
AccBSI CCGCTC 1 cut(s) 593
AccIII TCCGGA 1 cut(s) 352
AclWI GGATC 6 cut(s) 28, 270, 363, 457, 490, 959
AcuI CTGAAG 2 cut(s) 432, 585
AfaI GTAC 2 cut(s) 404, 1034
AfiI CCNNNNNNNGG 4 cut(s) 81, 220, 259, 706
AflIII ACRYGT 1 cut(s) 1133
AgsI TTSAA 8 cut(s) 41, 294, 458, 659, 782, 850, 1007, 1249
AjiI CACGTC 1 cut(s) 1134
AjnI CCWGG 2 cut(s) 699, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 951, 983
AleI CACNNNNGTG 1 cut(s) 11
Alw21I GWGCWC 2 cut(s) 58, 559
Alw26I GTCTC 2 cut(s) 809, 878
Alw44I GTGCAC 1 cut(s) 54
AlwI GGATC 6 cut(s) 28, 270, 363, 457, 490, 959
Aor13HI TCCGGA 1 cut(s) 352
ApaLI GTGCAC 1 cut(s) 54
ApeKI GCWGC 8 cut(s) 139, 407, 528, 683, 785, 791, 843, 1239
ArsI GACNNNNNNTTYG 2 cut(s) 1123, 1155
Asp700I GAANNNNTTC 1 cut(s) 695
AspS9I GGNCC 4 cut(s) 223, 972, 988, 1127
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 6 cut(s) 101, 865, 895, 1175, 1198, 1264
AsuNHI GCTAGC 1 cut(s) 386
AvaII GGWCC 4 cut(s) 223, 972, 988, 1127
BaeGI GKGCMC 1 cut(s) 58
BanI GGYRCC 1 cut(s) 474
BanII GRGCYC 1 cut(s) 559
Bbv12I GWGCWC 2 cut(s) 58, 559
BbvI GCAGC 8 cut(s) 151, 394, 540, 695, 772, 803, 855, 1251
BccI CCATC 4 cut(s) 778, 1040, 1066, 1284
BceAI ACGGC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 701, 867
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 2 cut(s) 809, 878
BfaI CTAG 2 cut(s) 387, 711
BfmI CTRYAG 2 cut(s) 137, 600
BglI GCCNNNNNGGC 2 cut(s) 278, 680
Bme1390I CCNGG 3 cut(s) 260, 701, 867
Bme18I GGWCC 4 cut(s) 223, 972, 988, 1127
BmgBI CACGTC 1 cut(s) 1134
BmgT120I GGNCC 4 cut(s) 223, 972, 988, 1127
BmiI GGNNCC 4 cut(s) 476, 973, 990, 1261
BmrFI CCNGG 3 cut(s) 260, 701, 867
BmrI ACTGGG 1 cut(s) 627
BmsI GCATC 4 cut(s) 369, 510, 515, 1059
BmtI GCTAGC 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 1202
BpuEI CTTGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 500
BsaI GGTCTC 2 cut(s) 809, 878
BsaJI CCNNGG 1 cut(s) 276
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 220, 259, 706
Bse1I ACTGG 7 cut(s) 400, 622, 953, 1064, 1096, 1168, 1185
Bse3DI GCAATG 1 cut(s) 1014
Bse8I GATNNNNATC 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 352
BseBI CCWGG 2 cut(s) 701, 867
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 396, 530
BseJI GATNNNNATC 1 cut(s) 500
BseLI CCNNNNNNNGG 4 cut(s) 81, 220, 259, 706
BseMI GCAATG 1 cut(s) 1014
BseMII CTCAG 3 cut(s) 309, 530, 622
BseNI ACTGG 7 cut(s) 400, 622, 953, 1064, 1096, 1168, 1185
BseRI GAGGAG 4 cut(s) 257, 572, 845, 848
BseSI GKGCMC 1 cut(s) 58
BseXI GCAGC 8 cut(s) 151, 394, 540, 695, 772, 803, 855, 1251
BseYI CCCAGC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 474
BsiHKAI GWGCWC 2 cut(s) 58, 559
BsiSI CCGG 2 cut(s) 260, 353
BslI CCNNNNNNNGG 4 cut(s) 81, 220, 259, 706
BsmAI GTCTC 2 cut(s) 809, 878
Bso31I GGTCTC 2 cut(s) 809, 878
Bsp1286I GDGCHC 2 cut(s) 58, 559
Bsp13I TCCGGA 1 cut(s) 352
Bsp1407I TGTACA 1 cut(s) 1032
Bsp143I GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
BspCNI CTCAG 3 cut(s) 310, 531, 621
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 4 cut(s) 476, 973, 990, 1261
BspMAI CTGCAG 2 cut(s) 141, 604
BspOI GCTAGC 1 cut(s) 390
BspPI GGATC 6 cut(s) 28, 270, 363, 457, 490, 959
BspT107I GGYRCC 1 cut(s) 474
BspTNI GGTCTC 2 cut(s) 809, 878
BsrBI CCGCTC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 1014
BsrGI TGTACA 1 cut(s) 1032
BsrI ACTGG 7 cut(s) 400, 622, 953, 1064, 1096, 1168, 1185
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 701, 867
Bst4CI ACNGT 4 cut(s) 305, 1043, 1112, 1120
BstAUI TGTACA 1 cut(s) 1032
BstC8I GCNNGC 2 cut(s) 388, 1102
BstDEI CTNAG 4 cut(s) 318, 539, 608, 687
BstEII GGTNACC 1 cut(s) 1163
BstF5I GGATG 2 cut(s) 396, 530
BstKTI GATC 9 cut(s) 36, 64, 129, 265, 358, 465, 498, 954, 1272
BstMAI GTCTC 2 cut(s) 809, 878
BstMBI GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
BstMWI GCNNNNNNNGC 9 cut(s) 278, 387, 599, 680, 721, 730, 791, 887, 1101
BstNI CCWGG 2 cut(s) 701, 867
BstNSI RCATGY 2 cut(s) 737, 1033
BstPI GGTNACC 1 cut(s) 1163
BstSCI CCNGG 3 cut(s) 258, 699, 865
BstSFI CTRYAG 2 cut(s) 137, 600
BstSLI GKGCMC 1 cut(s) 58
BstV1I GCAGC 8 cut(s) 151, 394, 540, 695, 772, 803, 855, 1251
BstX2I RGATCY 3 cut(s) 33, 262, 462
BstXI CCANNNNNNTGG 1 cut(s) 1250
BstYI RGATCY 3 cut(s) 33, 262, 462
BtrI CACGTC 1 cut(s) 1134
BtsCI GGATG 2 cut(s) 396, 530
BtsIMutI CAGTG 2 cut(s) 536, 1048
Cac8I GCNNGC 2 cut(s) 388, 1102
Cfr13I GGNCC 4 cut(s) 223, 972, 988, 1127
CseI GACGC 1 cut(s) 849
Csp6I GTAC 2 cut(s) 403, 1033
CviAII CATG 7 cut(s) 193, 201, 730, 734, 976, 1030, 1213
CviQI GTAC 2 cut(s) 403, 1033
DdeI CTNAG 4 cut(s) 318, 539, 608, 687
DpnI GATC 9 cut(s) 35, 63, 128, 264, 357, 464, 497, 953, 1271
DpnII GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
EciI GGCGGA 1 cut(s) 1252
Ecl136II GAGCTC 1 cut(s) 557
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 559
Eco31I GGTCTC 2 cut(s) 809, 878
Eco47I GGWCC 4 cut(s) 223, 972, 988, 1127
Eco53kI GAGCTC 1 cut(s) 557
Eco57I CTGAAG 2 cut(s) 432, 585
Eco91I GGTNACC 1 cut(s) 1163
EcoICRI GAGCTC 1 cut(s) 557
EcoO65I GGTNACC 1 cut(s) 1163
EcoRII CCWGG 2 cut(s) 699, 865
EcoT14I CCWWGG 1 cut(s) 276
EcoT22I ATGCAT 2 cut(s) 735, 1031
EcoT38I GRGCYC 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 7 cut(s) 196, 204, 733, 737, 979, 1033, 1216
FatI CATG 7 cut(s) 192, 200, 729, 733, 975, 1029, 1212
FokI GGATG 2 cut(s) 383, 537
FriOI GRGCYC 1 cut(s) 559
FspBI CTAG 2 cut(s) 387, 711
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 1202
HapII CCGG 2 cut(s) 260, 353
HgaI GACGC 1 cut(s) 849
Hin1II CATG 7 cut(s) 196, 204, 733, 737, 979, 1033, 1216
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 7 cut(s) 17, 326, 440, 606, 1007, 1060, 1139
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 2 cut(s) 260, 353
HphI GGTGA 6 cut(s) 101, 865, 895, 1175, 1198, 1264
Hpy166II GTNNAC 3 cut(s) 6, 56, 424
Hpy188III TCNNGA 9 cut(s) 70, 130, 167, 353, 512, 799, 916, 1054, 1069
Hpy8I GTNNAC 3 cut(s) 6, 56, 424
Hpy99I CGWCG 4 cut(s) 127, 843, 1135, 1231
HpyAV CCTTC 4 cut(s) 224, 685, 844, 953
HpyCH4III ACNGT 4 cut(s) 305, 1043, 1112, 1120
HpyCH4IV ACGT 5 cut(s) 162, 208, 426, 1133, 1226
HpyF10VI GCNNNNNNNGC 9 cut(s) 278, 387, 599, 680, 721, 730, 791, 887, 1101
HpyF3I CTNAG 4 cut(s) 318, 539, 608, 687
HpySE526I ACGT 5 cut(s) 162, 208, 426, 1133, 1226
Hsp92II CATG 7 cut(s) 196, 204, 733, 737, 979, 1033, 1216
Kpn2I TCCGGA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 424
Kzo9I GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
LmnI GCTCC 5 cut(s) 514, 554, 585, 835, 1265
Lsp1109I GCAGC 8 cut(s) 151, 394, 540, 695, 772, 803, 855, 1251
LweI GCATC 4 cut(s) 369, 510, 515, 1059
MaeI CTAG 2 cut(s) 387, 711
MaeII ACGT 5 cut(s) 162, 208, 426, 1133, 1226
MaeIII GTNAC 7 cut(s) 70, 209, 427, 613, 901, 1163, 1170
MalI GATC 9 cut(s) 35, 63, 128, 264, 357, 464, 497, 953, 1271
MbiI CCGCTC 1 cut(s) 593
MboI GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
MboII GAAGA 2 cut(s) 578, 1069
MflI RGATCY 3 cut(s) 33, 262, 462
MhlI GDGCHC 2 cut(s) 58, 559
MluCI AATT 3 cut(s) 652, 1192, 1285
MlyI GAGTC 4 cut(s) 26, 335, 434, 600
MmeI TCCRAC 3 cut(s) 720, 1137, 1154
Mph1103I ATGCAT 2 cut(s) 735, 1031
MroI TCCGGA 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 2 cut(s) 423, 1288
MslI CAYNNNNRTG 3 cut(s) 11, 734, 1248
MspI CCGG 2 cut(s) 260, 353
MspR9I CCNGG 3 cut(s) 260, 701, 867
MvaI CCWGG 2 cut(s) 701, 867
MwoI GCNNNNNNNGC 9 cut(s) 278, 387, 599, 680, 721, 730, 791, 887, 1101
NciI CCSGG 1 cut(s) 260
NdeII GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
NheI GCTAGC 1 cut(s) 386
NlaIII CATG 7 cut(s) 196, 204, 733, 737, 979, 1033, 1216
NlaIV GGNNCC 4 cut(s) 476, 973, 990, 1261
NmeAIII GCCGAG 1 cut(s) 886
NmuCI GTSAC 3 cut(s) 70, 901, 1163
NsiI ATGCAT 2 cut(s) 735, 1031
NspI RCATGY 2 cut(s) 737, 1033
OliI CACNNNNGTG 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 3 cut(s) 1007, 1060, 1139
PfoI TCCNGGA 1 cut(s) 699
PleI GAGTC 4 cut(s) 25, 334, 434, 600
PpsI GAGTC 4 cut(s) 25, 334, 434, 600
Psp124BI GAGCTC 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 699, 865
PspEI GGTNACC 1 cut(s) 1163
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 2 cut(s) 699, 865
PspN4I GGNNCC 4 cut(s) 476, 973, 990, 1261
PspPI GGNCC 4 cut(s) 223, 972, 988, 1127
PstI CTGCAG 2 cut(s) 141, 604
PsuI RGATCY 3 cut(s) 33, 262, 462
RsaI GTAC 2 cut(s) 404, 1034
RsaNI GTAC 2 cut(s) 403, 1033
RseI CAYNNNNRTG 3 cut(s) 11, 734, 1248
SacI GAGCTC 1 cut(s) 559
SaqAI TTAA 2 cut(s) 423, 1288
Sau3AI GATC 9 cut(s) 33, 61, 126, 262, 355, 462, 495, 951, 1269
Sau96I GGNCC 4 cut(s) 223, 972, 988, 1127
SchI GAGTC 4 cut(s) 26, 335, 434, 600
ScrFI CCNGG 3 cut(s) 260, 701, 867
SduI GDGCHC 2 cut(s) 58, 559
SfaNI GCATC 4 cut(s) 369, 510, 515, 1059
SfcI CTRYAG 2 cut(s) 137, 600
SinI GGWCC 4 cut(s) 223, 972, 988, 1127
SmiMI CAYNNNNRTG 3 cut(s) 11, 734, 1248
SmlI CTYRAG 1 cut(s) 285
SmoI CTYRAG 1 cut(s) 285
Sse9I AATT 3 cut(s) 652, 1192, 1285
SspI AATATT 1 cut(s) 101
SspMI CTAG 2 cut(s) 387, 711
SstI GAGCTC 1 cut(s) 559
StyD4I CCNGG 3 cut(s) 258, 699, 865
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 4 cut(s) 305, 1043, 1112, 1120
TaiI ACGT 5 cut(s) 165, 211, 429, 1136, 1229
TaqI TCGA 4 cut(s) 122, 300, 1053, 1115
TasI AATT 3 cut(s) 652, 1192, 1285
TatI WGTACW 1 cut(s) 1032
TauI GCSGC 4 cut(s) 284, 593, 710, 791
TfiI GAWTC 3 cut(s) 1007, 1060, 1139
Tru1I TTAA 2 cut(s) 423, 1288
Tru9I TTAA 2 cut(s) 423, 1288
TscAI CASTG 2 cut(s) 543, 1048
TseFI GTSAC 3 cut(s) 70, 901, 1163
TseI GCWGC 8 cut(s) 139, 407, 528, 683, 785, 791, 843, 1239
Tsp45I GTSAC 3 cut(s) 70, 901, 1163
TspDTI ATGAA 3 cut(s) 94, 111, 615
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 2 cut(s) 543, 1048
VneI GTGCAC 1 cut(s) 54
VpaK11BI GGWCC 4 cut(s) 223, 972, 988, 1127
XceI RCATGY 2 cut(s) 737, 1033
XcmI CCANNNNNNNNNTGG 2 cut(s) 82, 736
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 2 cut(s) 387, 711
Zsp2I ATGCAT 2 cut(s) 735, 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.