Rw4G026890

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000734
Physical Location & Seq
Reverse (-)
53157980 .. 53159287
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026890.1

Sequence Viewer

Length: 1158 bp
ATGGATGTAAATAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGACTACTCATGAATATTTCCTAGAGAAAATCATTTCGACGATCAAGAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACATAACCTTCCGATGGTCCAACCCTTCTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCAAGGCTCAGGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATGCTAATCCTTGTAAAGCTTGCTCTCACATCAAGTATGCTGCCGCAGTTGGCATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAAGCTCCTCCAAGCCGCTCAAACTAAAGGACTCAAAGTTGTTGGGGTATCATTTCATATAGGAGTAACAATACAGGCAGCTAAGGCGGTTTTTCAGGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCGATGCATTGTGCTTTGAAGCTGCGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGATTGAGAGGGGAGGTCAGACATTACTGGATCACGAAGGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATGTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTATGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCGCAGCCAAGATCACCTACCTTACTAAGAGCATCTCCAACAGAGTAGCTAAATTTAATTATATTTTTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

385

Amino Acids

42.29

Weight (kDa)

7.89

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 348 1.1e-12 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 53 - 224 4e-41 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 453
Acc36I ACCTGC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 445
AciI CCGC 8 cut(s) 387, 433, 525, 596, 611, 654, 692, 740
AclWI GGATC 3 cut(s) 246, 818, 959
AcoI YGGCCR 2 cut(s) 467, 717
AcsI RAATTY 1 cut(s) 1136
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 959
AgsI TTSAA 5 cut(s) 20, 302, 646, 686, 830
AjiI CACGTC 1 cut(s) 960
AjnI CCWGG 2 cut(s) 176, 889
AluBI AGCT 7 cut(s) 362, 443, 514, 590, 689, 997, 1133
AluI AGCT 7 cut(s) 362, 443, 514, 590, 689, 997, 1133
Alw21I GWGCWC 3 cut(s) 37, 493, 928
Alw26I GTCTC 1 cut(s) 737
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 3 cut(s) 246, 818, 959
Aor13HI TCCGGA 1 cut(s) 445
AoxI GGCC 2 cut(s) 467, 717
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 4 cut(s) 383, 587, 689, 1088
ApoI RAATTY 1 cut(s) 1136
AspLEI GCGC 2 cut(s) 823, 1088
AspS9I GGNCC 2 cut(s) 199, 953
AsuC2I CCSGG 3 cut(s) 236, 413, 726
AsuHPI GGTGA 3 cut(s) 983, 1024, 1090
AvaII GGWCC 2 cut(s) 199, 953
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 469
BanII GRGCYC 1 cut(s) 726
Bbv12I GWGCWC 3 cut(s) 37, 493, 928
BbvI GCAGC 4 cut(s) 370, 599, 676, 1100
BccI CCATC 2 cut(s) 190, 709
BceAI ACGGC 1 cut(s) 762
BciT130I CCWGG 2 cut(s) 178, 891
BcnI CCSGG 3 cut(s) 236, 413, 726
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 2 cut(s) 86, 824
BfmI CTRYAG 1 cut(s) 1060
BfoI RGCGCY 1 cut(s) 824
BfuAI ACCTGC 1 cut(s) 453
BisI GCNGC 6 cut(s) 384, 387, 525, 588, 690, 1089
BlsI GCNGC 6 cut(s) 385, 388, 526, 589, 691, 1090
Bme1390I CCNGG 5 cut(s) 178, 236, 413, 726, 891
Bme18I GGWCC 2 cut(s) 199, 953
BmgBI CACGTC 1 cut(s) 960
BmgT120I GGNCC 2 cut(s) 199, 953
BmrFI CCNGG 5 cut(s) 178, 236, 413, 726, 891
BmsI GCATC 4 cut(s) 405, 444, 661, 1125
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 3 cut(s) 268, 510, 591
BpuEI CTTGAG 1 cut(s) 246
BpuMI CCSGG 3 cut(s) 236, 413, 726
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 252, 889
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 812
BseAI TCCGGA 1 cut(s) 445
BseBI CCWGG 2 cut(s) 178, 891
BseDI CCNNGG 2 cut(s) 252, 889
BseGI GGATG 3 cut(s) 10, 396, 1055
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 282, 285
BseNI ACTGG 1 cut(s) 812
BseRI GAGGAG 2 cut(s) 233, 506
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 4 cut(s) 370, 599, 676, 1100
Bsh1285I CGRYCG 1 cut(s) 730
BshFI GGCC 2 cut(s) 469, 719
BsiEI CGRYCG 1 cut(s) 730
BsiHKAI GWGCWC 3 cut(s) 37, 493, 928
BsiSI CCGG 4 cut(s) 236, 413, 446, 726
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 737
BsmBI CGTCTC 1 cut(s) 737
BsnI GGCC 2 cut(s) 469, 719
Bsp1286I GDGCHC 4 cut(s) 37, 493, 726, 928
Bsp13I TCCGGA 1 cut(s) 445
Bsp143I GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
BspACI CCGC 8 cut(s) 387, 433, 525, 596, 611, 654, 692, 740
BspANI GGCC 2 cut(s) 469, 719
BspCNI CTCAG 2 cut(s) 281, 286
BspEI TCCGGA 1 cut(s) 445
BspHI TCATGA 2 cut(s) 48, 73
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 3 cut(s) 246, 818, 959
BspQI GCTCTTC 1 cut(s) 498
BsrBI CCGCTC 1 cut(s) 527
BsrI ACTGG 1 cut(s) 812
BssECI CCNNGG 2 cut(s) 252, 889
BssMI GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 2 cut(s) 178, 891
Bst4CI ACNGT 4 cut(s) 281, 488, 866, 938
Bst6I CTCTTC 1 cut(s) 498
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 364, 626, 759, 928
BstDEI CTNAG 6 cut(s) 29, 268, 294, 510, 591, 1110
BstEII GGTNACC 1 cut(s) 989
BstF5I GGATG 3 cut(s) 10, 396, 1055
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 2 cut(s) 823, 1088
BstKTI GATC 6 cut(s) 108, 241, 334, 813, 967, 1098
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
BstMCI CGRYCG 1 cut(s) 730
BstMWI GCNNNNNNNGC 4 cut(s) 593, 625, 634, 746
BstNI CCWGG 2 cut(s) 178, 891
BstNSI RCATGY 3 cut(s) 628, 641, 856
BstPI GGTNACC 1 cut(s) 989
BstSCI CCNGG 5 cut(s) 176, 234, 411, 724, 889
BstSFI CTRYAG 1 cut(s) 1060
BstSLI GKGCMC 1 cut(s) 37
BstV1I GCAGC 4 cut(s) 370, 599, 676, 1100
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 469, 719
BtrI CACGTC 1 cut(s) 960
BtsCI GGATG 3 cut(s) 10, 396, 1055
BveI ACCTGC 1 cut(s) 453
Cac8I GCNNGC 4 cut(s) 364, 626, 759, 928
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 2 cut(s) 823, 1088
Cfr13I GGNCC 2 cut(s) 199, 953
Csp6I GTAC 1 cut(s) 484
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 7 cut(s) 49, 74, 169, 625, 634, 638, 853
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 6 cut(s) 29, 268, 294, 510, 591, 1110
DpnI GATC 6 cut(s) 107, 240, 333, 812, 966, 1097
DpnII GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
EaeI YGGCCR 2 cut(s) 467, 717
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
EciI GGCGGA 1 cut(s) 626
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 199, 953
Eco91I GGTNACC 1 cut(s) 989
EcoO65I GGTNACC 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 176, 889
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 3 cut(s) 639, 676, 854
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 737
FaeI CATG 7 cut(s) 52, 77, 172, 628, 637, 641, 856
FatI CATG 7 cut(s) 48, 73, 168, 624, 633, 637, 852
Fnu4HI GCNGC 6 cut(s) 384, 387, 525, 588, 690, 1089
FokI GGATG 3 cut(s) 17, 383, 1042
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 6 cut(s) 384, 387, 525, 588, 690, 1089
FspBI CTAG 2 cut(s) 86, 824
GlaI GCGC 2 cut(s) 822, 1087
GluI GCNGC 6 cut(s) 384, 387, 525, 588, 690, 1089
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 2 cut(s) 469, 719
HapII CCGG 4 cut(s) 236, 413, 446, 726
HhaI GCGC 2 cut(s) 823, 1088
Hin1II CATG 7 cut(s) 52, 77, 172, 628, 637, 641, 856
Hin6I GCGC 2 cut(s) 821, 1086
HinP1I GCGC 2 cut(s) 821, 1086
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 302, 540, 830
HpaII CCGG 4 cut(s) 236, 413, 446, 726
HphI GGTGA 3 cut(s) 983, 1024, 1090
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 8 cut(s) 195, 295, 401, 670, 800, 846, 957, 1035
Hpy188III TCNNGA 8 cut(s) 49, 74, 109, 329, 446, 497, 605, 814
Hpy8I GTNNAC 1 cut(s) 35
Hpy99I CGWCG 2 cut(s) 106, 961
HpyAV CCTTC 3 cut(s) 200, 217, 811
HpyCH4III ACNGT 4 cut(s) 281, 488, 866, 938
HpyCH4IV ACGT 3 cut(s) 138, 959, 1052
HpyCH4V TGCA 9 cut(s) 35, 225, 284, 409, 624, 637, 674, 837, 852
HpyF10VI GCNNNNNNNGC 4 cut(s) 593, 625, 634, 746
HpyF3I CTNAG 6 cut(s) 29, 268, 294, 510, 591, 1110
HpySE526I ACGT 3 cut(s) 138, 959, 1052
Hsp92II CATG 7 cut(s) 52, 77, 172, 628, 637, 641, 856
HspAI GCGC 2 cut(s) 821, 1086
Kpn2I TCCGGA 1 cut(s) 445
Kzo9I GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 4 cut(s) 448, 459, 519, 694
Lsp1109I GCAGC 4 cut(s) 370, 599, 676, 1100
LweI GCATC 4 cut(s) 405, 444, 661, 1125
MaeI CTAG 2 cut(s) 86, 824
MaeII ACGT 3 cut(s) 138, 959, 1052
MaeIII GTNAC 3 cut(s) 574, 869, 989
MalI GATC 6 cut(s) 107, 240, 333, 812, 966, 1097
MbiI CCGCTC 1 cut(s) 527
MboI GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
MboII GAAGA 3 cut(s) 485, 512, 895
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 4 cut(s) 37, 493, 726, 928
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 5 cut(s) 55, 404, 1004, 1136, 1141
MluNI TGGCCA 1 cut(s) 469
MlyI GAGTC 1 cut(s) 534
MmeI TCCRAC 3 cut(s) 226, 980, 1146
Mox20I TGGCCA 1 cut(s) 469
Mph1103I ATGCAT 3 cut(s) 639, 676, 854
MroI TCCGGA 1 cut(s) 445
MscI TGGCCA 1 cut(s) 469
MseI TTAA 6 cut(s) 162, 219, 707, 1074, 1140, 1156
MslI CAYNNNNRTG 1 cut(s) 638
Msp20I TGGCCA 1 cut(s) 469
MspI CCGG 4 cut(s) 236, 413, 446, 726
MspR9I CCNGG 5 cut(s) 178, 236, 413, 726, 891
MvaI CCWGG 2 cut(s) 178, 891
MwoI GCNNNNNNNGC 4 cut(s) 593, 625, 634, 746
NciI CCSGG 3 cut(s) 236, 413, 726
NdeII GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
NlaIII CATG 7 cut(s) 52, 77, 172, 628, 637, 641, 856
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 2 cut(s) 869, 989
NsiI ATGCAT 3 cut(s) 639, 676, 854
NspI RCATGY 3 cut(s) 628, 641, 856
PaeI GCATGC 1 cut(s) 628
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 498
PfeI GAWTC 2 cut(s) 302, 830
PflFI GACNNNGTC 1 cut(s) 977
PkrI GCNGC 6 cut(s) 385, 388, 526, 589, 691, 1090
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 176, 889
PspEI GGTNACC 1 cut(s) 989
PspGI CCWGG 2 cut(s) 176, 889
PspPI GGNCC 2 cut(s) 199, 953
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 977
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 638
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 6 cut(s) 162, 219, 707, 1074, 1140, 1156
SatI GCNGC 6 cut(s) 384, 387, 525, 588, 690, 1089
Sau3AI GATC 6 cut(s) 105, 238, 331, 810, 964, 1095
Sau96I GGNCC 2 cut(s) 199, 953
SchI GAGTC 1 cut(s) 534
ScrFI CCNGG 5 cut(s) 178, 236, 413, 726, 891
SduI GDGCHC 4 cut(s) 37, 493, 726, 928
SfaNI GCATC 4 cut(s) 405, 444, 661, 1125
SfcI CTRYAG 1 cut(s) 1060
SinI GGWCC 2 cut(s) 199, 953
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SphI GCATGC 1 cut(s) 628
Sse9I AATT 5 cut(s) 55, 404, 1004, 1136, 1141
SsiI CCGC 8 cut(s) 387, 433, 525, 596, 611, 654, 692, 740
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 824
StyD4I CCNGG 5 cut(s) 176, 234, 411, 724, 889
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 281, 488, 866, 938
TaiI ACGT 3 cut(s) 141, 962, 1055
TaqI TCGA 3 cut(s) 101, 276, 941
TaqII GACCGA 1 cut(s) 279
TasI AATT 5 cut(s) 55, 404, 1004, 1136, 1141
TauI GCSGC 2 cut(s) 389, 527
TfiI GAWTC 2 cut(s) 302, 830
Tru1I TTAA 6 cut(s) 162, 219, 707, 1074, 1140, 1156
Tru9I TTAA 6 cut(s) 162, 219, 707, 1074, 1140, 1156
TseFI GTSAC 2 cut(s) 869, 989
TseI GCWGC 4 cut(s) 383, 587, 689, 1088
Tsp45I GTSAC 2 cut(s) 869, 989
TspDTI ATGAA 2 cut(s) 90, 554
Tth111I GACNNNGTC 1 cut(s) 977
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 199, 953
XapI RAATTY 1 cut(s) 1136
XceI RCATGY 3 cut(s) 628, 641, 856
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 2 cut(s) 86, 824
Zsp2I ATGCAT 3 cut(s) 639, 676, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.