RchiOBHm_Chr7g0227121

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000734
Physical Location & Seq
Forward (+)
50478185 .. 50480206
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20340

Sequence Viewer

Length: 1200 bp
ATGGAGTCCTTGCCTGAAGCTCTACCAAGTGCACCAGATCAGTTTGTGAGCAACAACGGGCTGAGTACTGATGAATATTTCCTTGAGAAAATTATTTCGACGATCAAGAAGCAGCAAAATGAGGAAGCATTTTACGTGCTGGATTTAGATGTTGTCATCAACCTCATGGAAACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTTTACGCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCAGCTTGGTGGCTCATGGCTCAAGTTTCGATTGTGCAAGTCAATCTGAGATTGAGTCCATTTTGGCTCTTGGAGTTTCTCCGGATCGCATAATCTATGCAAATCCCTGTAAAGCTAGCTCTCACATCAAGTACGCTGCCAAAGTTGGTGTTAACCTAATGACTTTCGACTCGGTATATGAAGTTGAAAAGATACAAAAATGCCATCCCAAATGTTCTTTACTTATCCGCATTAAAGCTCCGGACGAAAGTGGGTGCATGTGGACTACGAGTTCCAAGTTCGGTGCTCTCCCTGAAGAAGTGTCCTCGCTTCTCCAAGCCGCTCAAACTGTAGGACTCGAAGTTGCTGGGGTGTCATTTCACATAGGGAGTAAGTCCCACAATTCTCAAGCGTACAAAACAGCTATAGAGGCAGCTAAGGCGGTTTTTCAGGAGGCAGCCAGGCTCTGCATGGCTCCCATGTATGTGTTGAACATTGGTGGCGGCTTTGTGTCTGAGCCATCATTCTTTGAAGCTGCAGCATCAGCCGTGAAAACCGCTGTGGAGACATATTTTTCAGAGGAAGAGCGACGCAGCTTAACAGTGATAGCCGAGCCAGGGGAGGTCAGACACTACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCGTGCGGACCCTAGAACCCTACTTGAATCGTGCATTGCTCTGAAATGCATGTCCAATAACAGTGATGGCAACAAGAAGAATCCAGTCATAATGGTACGCGGCAAAAGAACTGGTAGTGCTCGCACTTATATTTCGACTGTGTTTGGTCCAACGTGTGATCCGGTTGACAAGGTGTTGGGGGGTGAGCAGCTACCAGAACTTGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCGGCGTGTAGCAACAAATTTAATGGTTTTGGCTCAAGCAAGATCACCTACCTTACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

399

Amino Acids

43.75

Weight (kDa)

5.52

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 52 - 282 2.2e-68 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 324 - 376 3e-09 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 566
AccII CGCG 1 cut(s) 990
AccIII TCCGGA 2 cut(s) 325, 484
AciI CCGC 7 cut(s) 472, 564, 665, 726, 780, 896, 990
AclWI GGATC 4 cut(s) 243, 336, 869, 1043
AcsI RAATTY 1 cut(s) 1154
AcuI CTGAAG 2 cut(s) 36, 558
AfaI GTAC 4 cut(s) 67, 377, 638, 987
AfiI CCNNNNNNNGG 2 cut(s) 193, 840
AflIII ACRYGT 1 cut(s) 1043
AgsI TTSAA 4 cut(s) 431, 715, 755, 917
AjnI CCWGG 3 cut(s) 173, 683, 838
AloI GAACNNNNNNTCC 2 cut(s) 499, 531
Alw21I GWGCWC 3 cut(s) 34, 532, 1012
Alw26I GTCTC 1 cut(s) 782
Alw44I GTGCAC 1 cut(s) 30
AlwI GGATC 4 cut(s) 243, 336, 869, 1043
AlwNI CAGNNNCTG 1 cut(s) 690
Aor13HI TCCGGA 2 cut(s) 325, 484
ApaLI GTGCAC 1 cut(s) 30
ApeKI GCWGC 8 cut(s) 112, 380, 656, 680, 758, 761, 816, 1078
ApoI RAATTY 1 cut(s) 1154
AspS9I GGNCC 4 cut(s) 196, 882, 898, 1037
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 1085, 1108, 1174
AsuNHI GCTAGC 1 cut(s) 359
AvaII GGWCC 4 cut(s) 196, 882, 898, 1037
BaeGI GKGCMC 1 cut(s) 34
Bbv12I GWGCWC 3 cut(s) 34, 532, 1012
BbvI GCAGC 8 cut(s) 124, 367, 668, 692, 745, 773, 828, 1090
BccI CCATC 4 cut(s) 187, 456, 751, 950
BceAI ACGGC 1 cut(s) 755
BciT130I CCWGG 3 cut(s) 175, 685, 840
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 782
BfaI CTAG 2 cut(s) 360, 903
BfmI CTRYAG 3 cut(s) 573, 648, 759
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 4 cut(s) 175, 233, 685, 840
Bme18I GGWCC 4 cut(s) 196, 882, 898, 1037
BmgT120I GGNCC 4 cut(s) 196, 882, 898, 1037
BmiI GGNNCC 3 cut(s) 699, 883, 900
BmrFI CCNGG 4 cut(s) 175, 233, 685, 840
BmsI GCATC 2 cut(s) 773, 879
BmtI GCTAGC 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 660
BpuEI CTTGAG 5 cut(s) 104, 250, 615, 1112, 1156
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 839
BsaWI WCCGGW 3 cut(s) 325, 484, 1051
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 840
Bse1I ACTGG 3 cut(s) 863, 974, 1006
Bse3DI GCAATG 1 cut(s) 924
BseAI TCCGGA 2 cut(s) 325, 484
BseBI CCWGG 3 cut(s) 175, 685, 840
BseDI CCNNGG 1 cut(s) 839
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 2 cut(s) 193, 840
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 3 cut(s) 53, 282, 729
BseNI ACTGG 3 cut(s) 863, 974, 1006
BseRI GAGGAG 1 cut(s) 230
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 8 cut(s) 124, 367, 668, 692, 745, 773, 828, 1090
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 990
BsiHKAI GWGCWC 3 cut(s) 34, 532, 1012
BsiSI CCGG 4 cut(s) 233, 326, 485, 1052
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 193, 840
BsmAI GTCTC 1 cut(s) 782
BsmFI GGGAC 1 cut(s) 604
Bsp1286I GDGCHC 3 cut(s) 34, 532, 1012
Bsp13I TCCGGA 2 cut(s) 325, 484
Bsp143I GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
BspACI CCGC 7 cut(s) 472, 564, 665, 726, 780, 896, 990
BspCNI CTCAG 3 cut(s) 54, 283, 730
BspEI TCCGGA 2 cut(s) 325, 484
BspFNI CGCG 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 699, 883, 900
BspMAI CTGCAG 1 cut(s) 763
BspOI GCTAGC 1 cut(s) 363
BspPI GGATC 4 cut(s) 243, 336, 869, 1043
BspQI GCTCTTC 1 cut(s) 801
BsrBI CCGCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 3 cut(s) 863, 974, 1006
BssECI CCNNGG 1 cut(s) 839
BssMI GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
Bst2UI CCWGG 3 cut(s) 175, 685, 840
Bst4CI ACNGT 4 cut(s) 574, 826, 953, 1030
Bst6I CTCTTC 1 cut(s) 801
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 247, 361, 894, 1012
BstDEI CTNAG 4 cut(s) 62, 291, 660, 738
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 990
BstKTI GATC 7 cut(s) 40, 105, 238, 331, 864, 1051, 1182
BstMAI GTCTC 1 cut(s) 782
BstMBI GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
BstMWI GCNNNNNNNGC 3 cut(s) 653, 662, 767
BstNI CCWGG 3 cut(s) 175, 685, 840
BstNSI RCATGY 2 cut(s) 505, 943
BstSCI CCNGG 4 cut(s) 173, 231, 683, 838
BstSFI CTRYAG 3 cut(s) 573, 648, 759
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 990
BstV1I GCAGC 8 cut(s) 124, 367, 668, 692, 745, 773, 828, 1090
BstX2I RGATCY 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 1 cut(s) 235
BtsCI GGATG 1 cut(s) 448
BtsIMutI CAGTG 2 cut(s) 831, 958
Cac8I GCNNGC 4 cut(s) 247, 361, 894, 1012
CaiI CAGNNNCTG 1 cut(s) 690
Cfr13I GGNCC 4 cut(s) 196, 882, 898, 1037
CseI GACGC 1 cut(s) 822
Csp6I GTAC 4 cut(s) 66, 376, 637, 986
CviAII CATG 7 cut(s) 166, 260, 502, 694, 703, 886, 940
CviQI GTAC 4 cut(s) 66, 376, 637, 986
DdeI CTNAG 4 cut(s) 62, 291, 660, 738
DpnI GATC 7 cut(s) 39, 104, 237, 330, 863, 1050, 1181
DpnII GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
Eco47I GGWCC 4 cut(s) 196, 882, 898, 1037
Eco57I CTGAAG 2 cut(s) 36, 558
EcoRII CCWGG 3 cut(s) 173, 683, 838
EcoT22I ATGCAT 1 cut(s) 941
FaeI CATG 7 cut(s) 169, 263, 505, 697, 706, 889, 943
FaqI GGGAC 1 cut(s) 604
FatI CATG 7 cut(s) 165, 259, 501, 693, 702, 885, 939
FokI GGATG 1 cut(s) 435
FspBI CTAG 2 cut(s) 360, 903
GsaI CCCAGC 1 cut(s) 594
HapII CCGG 4 cut(s) 233, 326, 485, 1052
HgaI GACGC 1 cut(s) 822
Hin1II CATG 7 cut(s) 169, 263, 505, 697, 706, 889, 943
HincII GTYRAC 2 cut(s) 397, 1057
HindII GTYRAC 2 cut(s) 397, 1057
HinfI GANTC 6 cut(s) 5, 299, 413, 579, 917, 970
HpaI GTTAAC 1 cut(s) 397
HpaII CCGG 4 cut(s) 233, 326, 485, 1052
HphI GGTGA 3 cut(s) 1085, 1108, 1174
Hpy166II GTNNAC 4 cut(s) 32, 397, 507, 1057
Hpy188I TCNGA 7 cut(s) 192, 292, 739, 802, 851, 933, 1119
Hpy188III TCNNGA 4 cut(s) 106, 326, 485, 674
Hpy8I GTNNAC 4 cut(s) 32, 397, 507, 1057
Hpy99I CGWCG 3 cut(s) 103, 816, 1141
HpyAV CCTTC 2 cut(s) 197, 863
HpyCH4III ACNGT 4 cut(s) 574, 826, 953, 1030
HpyCH4IV ACGT 4 cut(s) 135, 181, 1043, 1136
HpyCH4V TGCA 9 cut(s) 32, 222, 281, 344, 501, 693, 761, 924, 939
HpyF10VI GCNNNNNNNGC 3 cut(s) 653, 662, 767
HpyF3I CTNAG 4 cut(s) 62, 291, 660, 738
HpySE526I ACGT 4 cut(s) 135, 181, 1043, 1136
Hsp92II CATG 7 cut(s) 169, 263, 505, 697, 706, 889, 943
Kpn2I TCCGGA 2 cut(s) 325, 484
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 2 cut(s) 487, 703
Lsp1109I GCAGC 8 cut(s) 124, 367, 668, 692, 745, 773, 828, 1090
LweI GCATC 2 cut(s) 773, 879
MaeI CTAG 2 cut(s) 360, 903
MaeII ACGT 4 cut(s) 135, 181, 1043, 1136
MaeIII GTNAC 1 cut(s) 182
MalI GATC 7 cut(s) 39, 104, 237, 330, 863, 1050, 1181
MbiI CCGCTC 1 cut(s) 566
MboI GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
MboII GAAGA 3 cut(s) 551, 818, 979
MflI RGATCY 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 34, 532, 1012
MluCI AATT 3 cut(s) 90, 625, 1154
MlyI GAGTC 4 cut(s) 14, 308, 407, 573
MmeI TCCRAC 2 cut(s) 223, 1064
MnlI CCTC 9 cut(s) 115, 173, 251, 559, 646, 670, 796, 838, 1087
Mph1103I ATGCAT 1 cut(s) 941
MroI TCCGGA 2 cut(s) 325, 484
MseI TTAA 5 cut(s) 216, 396, 477, 821, 1158
MslI CAYNNNNRTG 1 cut(s) 707
MspA1I CMGCKG 1 cut(s) 782
MspI CCGG 4 cut(s) 233, 326, 485, 1052
MspR9I CCNGG 4 cut(s) 175, 233, 685, 840
MvaI CCWGG 3 cut(s) 175, 685, 840
MvnI CGCG 1 cut(s) 990
MwoI GCNNNNNNNGC 3 cut(s) 653, 662, 767
NciI CCSGG 1 cut(s) 233
NdeII GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
NheI GCTAGC 1 cut(s) 359
NlaIII CATG 7 cut(s) 169, 263, 505, 697, 706, 889, 943
NlaIV GGNNCC 3 cut(s) 699, 883, 900
NmeAIII GCCGAG 1 cut(s) 859
NsiI ATGCAT 1 cut(s) 941
NspI RCATGY 2 cut(s) 505, 943
PciSI GCTCTTC 1 cut(s) 801
PfeI GAWTC 2 cut(s) 917, 970
PleI GAGTC 4 cut(s) 13, 307, 407, 573
PpsI GAGTC 4 cut(s) 13, 307, 407, 573
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 3 cut(s) 173, 683, 838
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 3 cut(s) 173, 683, 838
PspN4I GGNNCC 3 cut(s) 699, 883, 900
PspPI GGNCC 4 cut(s) 196, 882, 898, 1037
PstI CTGCAG 1 cut(s) 763
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 4 cut(s) 67, 377, 638, 987
RsaNI GTAC 4 cut(s) 66, 376, 637, 986
RseI CAYNNNNRTG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 5 cut(s) 216, 396, 477, 821, 1158
Sau3AI GATC 7 cut(s) 37, 102, 235, 328, 861, 1048, 1179
Sau96I GGNCC 4 cut(s) 196, 882, 898, 1037
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 4 cut(s) 14, 308, 407, 573
ScrFI CCNGG 4 cut(s) 175, 233, 685, 840
SduI GDGCHC 3 cut(s) 34, 532, 1012
SfaNI GCATC 2 cut(s) 773, 879
SfcI CTRYAG 3 cut(s) 573, 648, 759
SinI GGWCC 4 cut(s) 196, 882, 898, 1037
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 5 cut(s) 83, 265, 630, 1091, 1171
SmoI CTYRAG 5 cut(s) 83, 265, 630, 1091, 1171
Sse9I AATT 3 cut(s) 90, 625, 1154
SsiI CCGC 7 cut(s) 472, 564, 665, 726, 780, 896, 990
SspI AATATT 1 cut(s) 77
SspMI CTAG 2 cut(s) 360, 903
StyD4I CCNGG 4 cut(s) 173, 231, 683, 838
TaaI ACNGT 4 cut(s) 574, 826, 953, 1030
TaiI ACGT 4 cut(s) 138, 184, 1046, 1139
TaqI TCGA 5 cut(s) 98, 273, 411, 582, 1025
TasI AATT 3 cut(s) 90, 625, 1154
TatI WGTACW 1 cut(s) 65
TauI GCSGC 3 cut(s) 566, 729, 993
TfiI GAWTC 2 cut(s) 917, 970
Tru1I TTAA 5 cut(s) 216, 396, 477, 821, 1158
Tru9I TTAA 5 cut(s) 216, 396, 477, 821, 1158
TscAI CASTG 2 cut(s) 831, 958
TseI GCWGC 8 cut(s) 112, 380, 656, 680, 758, 761, 816, 1078
TspDTI ATGAA 2 cut(s) 87, 438
TspRI CASTG 2 cut(s) 831, 958
VneI GTGCAC 1 cut(s) 30
VpaK11BI GGWCC 4 cut(s) 196, 882, 898, 1037
XapI RAATTY 1 cut(s) 1154
XceI RCATGY 2 cut(s) 505, 943
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
XspI CTAG 2 cut(s) 360, 903
ZrmI AGTACT 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.