Rroxscaffold_6G00393570

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000734
Physical Location & Seq
Forward (+)
13721623 .. 13735703
14081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393570.1

Sequence Viewer

Length: 822 bp
ATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGCCATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTGTCTGAAATGCATTTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTACGGTAAGTGGTAAAGGTGTCGGTGGTGCTCGCACTTTCAGTTTGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGATGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGACTCGGGCTTCGACTCTAATGCCGATCTATGGCGGAGCGATAGACCGCCTCCGCCATCGAAACCTTCGAAACTCTCCTCTCTAGCTAGAATCCATCGGGATTCATCACCTTATCTCCGACTATTTGGGGCTGATCCTTCAAAGCTAGATGACGAGTTGCCTCCGAATTCTATAGCCTTATATAAGTCTAATGAAACACATACAACTATACAAGCACAACCAGACGTACCAATTGTTTGTAGGAGATCAATGATCATGAAGGTTGAGGTTGAGTTGGTGGAGAAGCAGGCGAATCTATTGACGAGAGGAAGAATCCATGTCAATGACCACTTTGTTCGGGGCTGGCCTTCTTCTCGCTTATTTCATTTAAGGTTCACCTCCATTGATGCAGCCTTTGTTCCAAATAATGTGAAAGAAGAAAAAGCTCTGAATGTGAAGAGGAAAAAGAAAAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

273

Amino Acids

30.63

Weight (kDa)

8.77

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 11 - 121 2.9e-12 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 4 cut(s) 26, 397, 410, 416
AclWI GGATC 4 cut(s) 104, 141, 281, 491
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 529
AfaI GTAC 2 cut(s) 139, 591
AfeI AGCGCT 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 393
AflIII ACRYGT 1 cut(s) 281
AgsI TTSAA 2 cut(s) 152, 504
AjiI CACGTC 1 cut(s) 282
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 4 cut(s) 319, 449, 508, 788
AluI AGCT 4 cut(s) 319, 449, 508, 788
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 4 cut(s) 104, 141, 281, 491
Ama87I CYCGRG 1 cut(s) 367
Aor51HI AGCGCT 1 cut(s) 144
AoxI GGCC 2 cut(s) 3, 707
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 1 cut(s) 529
ArsI GACNNNNNNTTYG 2 cut(s) 356, 388
AspLEI GCGC 2 cut(s) 129, 145
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 305, 346, 462, 730
AsuII TTCGAA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 1 cut(s) 764
BccI CCATC 3 cut(s) 302, 427, 465
BceAI ACGGC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 4 cut(s) 146, 446, 450, 509
BfmI CTRYAG 1 cut(s) 534
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
Bme1390I CCNGG 2 cut(s) 12, 213
Bme18I GGWCC 1 cut(s) 275
BmeT110I CYCGRG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 110, 118
BmrFI CCNGG 2 cut(s) 12, 213
BmsI GCATC 2 cut(s) 114, 739
Bpu14I TTCGAA 1 cut(s) 431
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 112, 211
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 1 cut(s) 393
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 112, 211
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 393
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 430
BseXI GCAGC 1 cut(s) 764
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 2 cut(s) 5, 709
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 393
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 2 cut(s) 5, 709
BsoBI CYCGRG 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 12, 250
Bsp143I GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 4 cut(s) 26, 397, 410, 416
BspANI GGCC 2 cut(s) 5, 709
BspFNI CGCG 1 cut(s) 129
BspHI TCATGA 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 110, 118
BspPI GGATC 4 cut(s) 104, 141, 281, 491
BspT104I TTCGAA 1 cut(s) 431
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 112, 211
BssMI GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 188, 223
Bst6I CTCTTC 1 cut(s) 794
BstBI TTCGAA 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 45, 250, 651, 707
BstDSI CCRYGG 1 cut(s) 112
BstEII GGTNACC 1 cut(s) 311
BstF5I GGATG 1 cut(s) 313
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 129, 145
BstKTI GATC 7 cut(s) 99, 136, 289, 391, 499, 611, 618
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 10, 211
BstSFI CTRYAG 1 cut(s) 534
BstUI CGCG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 764
BsuRI GGCC 2 cut(s) 5, 709
BtgI CCRYGG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 45, 250, 651, 707
CciI TCATGA 1 cut(s) 618
CfoI GCGC 2 cut(s) 129, 145
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 138, 590
CviAII CATG 4 cut(s) 113, 121, 619, 680
CviQI GTAC 2 cut(s) 138, 590
DpnI GATC 7 cut(s) 98, 135, 288, 390, 498, 610, 617
DpnII GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 794
EarI CTCTTC 1 cut(s) 794
EciI GGCGGA 2 cut(s) 405, 412
Eco130I CCWWGG 1 cut(s) 112
Eco24I GRGCYC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 367
Eco91I GGTNACC 1 cut(s) 311
EcoO65I GGTNACC 1 cut(s) 311
EcoRI GAATTC 1 cut(s) 529
EcoRII CCWGG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 112
EcoT22I ATGCAT 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 4 cut(s) 116, 124, 622, 683
FatI CATG 4 cut(s) 112, 120, 618, 679
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 4 cut(s) 146, 446, 450, 509
GlaI GCGC 2 cut(s) 128, 144
GluI GCNGC 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 5, 709
HapII CCGG 1 cut(s) 12
HhaI GCGC 2 cut(s) 129, 145
Hin1II CATG 4 cut(s) 116, 124, 622, 683
Hin6I GCGC 2 cut(s) 127, 143
HinP1I GCGC 2 cut(s) 127, 143
HinfI GANTC 7 cut(s) 152, 365, 377, 453, 464, 655, 675
HpaII CCGG 1 cut(s) 12
HphI GGTGA 4 cut(s) 305, 346, 462, 730
Hpy166II GTNNAC 1 cut(s) 738
Hpy188I TCNGA 6 cut(s) 168, 279, 357, 482, 528, 792
Hpy188III TCNNGA 2 cut(s) 461, 619
Hpy8I GTNNAC 1 cut(s) 738
Hpy99I CGWCG 1 cut(s) 283
HpyAV CCTTC 5 cut(s) 98, 438, 510, 616, 720
HpyCH4III ACNGT 2 cut(s) 188, 223
HpyCH4IV ACGT 2 cut(s) 281, 588
HpyCH4V TGCA 3 cut(s) 159, 174, 752
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 281, 588
Hsp92II CATG 4 cut(s) 116, 124, 622, 683
HspAI GCGC 2 cut(s) 127, 143
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
LmnI GCTCC 2 cut(s) 122, 399
Lsp1109I GCAGC 1 cut(s) 764
LweI GCATC 2 cut(s) 114, 739
MaeI CTAG 4 cut(s) 146, 446, 450, 509
MaeII ACGT 2 cut(s) 281, 588
MaeIII GTNAC 2 cut(s) 191, 311
MalI GATC 7 cut(s) 98, 135, 288, 390, 498, 610, 617
MboI GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
MboII GAAGA 5 cut(s) 217, 684, 705, 791, 811
MfeI CAATTG 1 cut(s) 594
MhlI GDGCHC 2 cut(s) 12, 250
MluCI AATT 3 cut(s) 326, 529, 594
MlyI GAGTC 2 cut(s) 359, 371
MmeI TCCRAC 2 cut(s) 302, 505
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 1 cut(s) 731
MslI CAYNNNNRTG 1 cut(s) 684
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 12, 213
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 213
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 12
NcoI CCATGG 1 cut(s) 112
NdeII GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
NlaIII CATG 4 cut(s) 116, 124, 622, 683
NlaIV GGNNCC 2 cut(s) 110, 118
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 191, 311
NsiI ATGCAT 1 cut(s) 176
NspV TTCGAA 1 cut(s) 431
PagI TCATGA 1 cut(s) 618
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 5 cut(s) 152, 453, 464, 655, 675
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 2 cut(s) 359, 371
PpsI GAGTC 2 cut(s) 359, 371
Psp6I CCWGG 1 cut(s) 211
PspEI GGTNACC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 110, 118
PspPI GGNCC 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 2 cut(s) 139, 591
RsaNI GTAC 2 cut(s) 138, 590
RseI CAYNNNNRTG 1 cut(s) 684
SaqAI TTAA 1 cut(s) 731
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 7 cut(s) 96, 133, 286, 388, 496, 608, 615
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 2 cut(s) 359, 371
ScrFI CCNGG 2 cut(s) 12, 213
SduI GDGCHC 2 cut(s) 12, 250
SfaNI GCATC 2 cut(s) 114, 739
SfcI CTRYAG 1 cut(s) 534
SfuI TTCGAA 1 cut(s) 431
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 684
Sse9I AATT 3 cut(s) 326, 529, 594
SsiI CCGC 4 cut(s) 26, 397, 410, 416
SspMI CTAG 4 cut(s) 146, 446, 450, 509
StyD4I CCNGG 2 cut(s) 10, 211
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 2 cut(s) 188, 223
TaiI ACGT 2 cut(s) 284, 591
TaqI TCGA 3 cut(s) 375, 422, 431
TasI AATT 3 cut(s) 326, 529, 594
TfiI GAWTC 5 cut(s) 152, 453, 464, 655, 675
Tru1I TTAA 1 cut(s) 731
Tru9I TTAA 1 cut(s) 731
TseFI GTSAC 2 cut(s) 191, 311
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 2 cut(s) 191, 311
TspDTI ATGAA 4 cut(s) 456, 570, 635, 716
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XspI CTAG 4 cut(s) 146, 446, 450, 509
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.