Rh3DG325700

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000734
Physical Location & Seq
Reverse (-)
35702256 .. 35711424
9169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG325700.1

Sequence Viewer

Length: 783 bp
ATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCCATGCATTGTGCTTTGTAGCTGCGGCAACAGCCGTGAAAACTGCCGTGGAAAAGTACTTTTCAAAAGTGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATTTCCAATAATAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTAAGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTCATACGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCACAGCCAAGGAACAATTCTTCGGTTCACCCCTAGGTGCAGCATCGTTCTCCAATTCTAAAAGGTCACTTGGGTCATGTGCTCAGCAAGACCTGTGGGAATTCAAACATCTGTTAATCCTAGCTTTTGATTTCCAACAGTACTCGAGTGTTGTTGCTGCAGCTAGGGAGGCATTAATAAGTGGAGTGCCCTCTTTATCTATTTTCCTGAATTGCAAAGCGTTGATCAAGAAGATGAATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

260

Amino Acids

28.41

Weight (kDa)

8.14

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 4 - 54 5e-06 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 56 - 167 1e-14 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 264
AciI CCGC 3 cut(s) 30, 68, 161
AclWI GGATC 3 cut(s) 239, 276, 416
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 638
AfaI GTAC 3 cut(s) 101, 274, 680
AfeI AGCGCT 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 4 cut(s) 22, 108, 287, 643
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 4 cut(s) 65, 454, 662, 701
AluI AGCT 4 cut(s) 65, 454, 662, 701
Alw21I GWGCWC 2 cut(s) 385, 622
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 239, 276, 416
Ama87I CYCGRG 1 cut(s) 682
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 4 cut(s) 65, 578, 695, 698
ApoI RAATTY 1 cut(s) 638
AseI ATTAAT 1 cut(s) 713
AspA2I CCTAGG 1 cut(s) 571
AspLEI GCGC 2 cut(s) 264, 280
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 440, 481, 558
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 1 cut(s) 410
AvrII CCTAGG 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 729
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 2 cut(s) 385, 622
BbvI GCAGC 4 cut(s) 52, 590, 682, 710
BccI CCATC 1 cut(s) 130
BceAI ACGGC 3 cut(s) 62, 74, 183
BciT130I CCWGG 1 cut(s) 348
BclI TGATCA 1 cut(s) 762
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 4 cut(s) 281, 572, 659, 702
BfmI CTRYAG 2 cut(s) 514, 696
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 5 cut(s) 66, 69, 579, 696, 699
BlnI CCTAGG 1 cut(s) 571
BlpI GCTNAGC 1 cut(s) 621
BlsI GCNGC 5 cut(s) 67, 70, 580, 697, 700
BmcAI AGTACT 2 cut(s) 101, 680
Bme1390I CCNGG 2 cut(s) 147, 348
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 682
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 245, 253
BmrFI CCNGG 2 cut(s) 147, 348
BmsI GCATC 2 cut(s) 249, 590
Bpu1102I GCTNAGC 1 cut(s) 621
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 5 cut(s) 90, 247, 346, 546, 571
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 5 cut(s) 90, 247, 346, 546, 571
BseGI GGATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 635
BseNI ACTGG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 729
BseXI GCAGC 4 cut(s) 52, 590, 682, 710
BsgI GTGCAG 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 2 cut(s) 385, 622
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 140
BsoBI CYCGRG 1 cut(s) 682
Bsp1286I GDGCHC 4 cut(s) 147, 385, 622, 729
Bsp143I GATC 4 cut(s) 231, 268, 421, 762
Bsp1720I GCTNAGC 1 cut(s) 621
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 30, 68, 161
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 634
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 245, 253
BspMAI CTGCAG 1 cut(s) 700
BspPI GGATC 3 cut(s) 239, 276, 416
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 5 cut(s) 90, 247, 346, 546, 571
BssMI GATC 4 cut(s) 231, 268, 421, 762
BssT1I CCWWGG 3 cut(s) 247, 546, 571
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 395, 678
BstC8I GCNNGC 2 cut(s) 180, 385
BstDEI CTNAG 1 cut(s) 621
BstDSI CCRYGG 2 cut(s) 90, 247
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 1 cut(s) 509
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 2 cut(s) 264, 280
BstKTI GATC 4 cut(s) 234, 271, 424, 765
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 231, 268, 421, 762
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 4 cut(s) 10, 74, 167, 707
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 145, 346
BstSFI CTRYAG 2 cut(s) 514, 696
BstSLI GKGCMC 1 cut(s) 729
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 4 cut(s) 52, 590, 682, 710
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 2 cut(s) 90, 247
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 180, 385
CfoI GCGC 2 cut(s) 264, 280
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 3 cut(s) 100, 273, 679
CspCI CAANNNNNGTGG 2 cut(s) 614, 649
CviAII CATG 6 cut(s) 10, 14, 47, 248, 256, 615
CviQI GTAC 3 cut(s) 100, 273, 679
DdeI CTNAG 1 cut(s) 621
DpnI GATC 4 cut(s) 233, 270, 423, 764
DpnII GATC 4 cut(s) 231, 268, 421, 762
EaeI YGGCCR 1 cut(s) 138
Eco130I CCWWGG 3 cut(s) 247, 546, 571
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 682
Eco91I GGTNACC 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 3 cut(s) 247, 546, 571
EcoT22I ATGCAT 3 cut(s) 15, 52, 311
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 3 cut(s) 247, 546, 571
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 6 cut(s) 13, 17, 50, 251, 259, 618
FaiI YATR 9 cut(s) 11, 15, 48, 249, 257, 356, 497, 504, 616
FaqI GGGAC 1 cut(s) 28
FatI CATG 6 cut(s) 9, 13, 46, 247, 255, 614
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 5 cut(s) 66, 69, 579, 696, 699
FokI GGATG 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 66, 69, 579, 696, 699
FspBI CTAG 4 cut(s) 281, 572, 659, 702
GlaI GCGC 2 cut(s) 263, 279
GluI GCNGC 5 cut(s) 66, 69, 579, 696, 699
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 147
HhaI GCGC 2 cut(s) 264, 280
Hin1II CATG 6 cut(s) 13, 17, 50, 251, 259, 618
Hin6I GCGC 2 cut(s) 262, 278
HinP1I GCGC 2 cut(s) 262, 278
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 440, 481, 558
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 4 cut(s) 221, 303, 414, 492
Hpy188III TCNNGA 2 cut(s) 745, 766
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 395, 678
HpyCH4IV ACGT 2 cut(s) 416, 506
HpyCH4V TGCA 7 cut(s) 13, 50, 294, 309, 578, 698, 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 74, 167, 707
HpyF3I CTNAG 1 cut(s) 621
HpySE526I ACGT 2 cut(s) 416, 506
Hsp92II CATG 6 cut(s) 13, 17, 50, 251, 259, 618
HspAI GCGC 2 cut(s) 262, 278
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 4 cut(s) 231, 268, 421, 762
LmnI GCTCC 2 cut(s) 115, 257
Lsp1109I GCAGC 4 cut(s) 52, 590, 682, 710
LweI GCATC 2 cut(s) 249, 590
MaeI CTAG 4 cut(s) 281, 572, 659, 702
MaeII ACGT 2 cut(s) 416, 506
MaeIII GTNAC 3 cut(s) 326, 446, 603
MalI GATC 4 cut(s) 233, 270, 423, 764
MboI GATC 4 cut(s) 231, 268, 421, 762
MboII GAAGA 3 cut(s) 352, 550, 781
MhlI GDGCHC 4 cut(s) 147, 385, 622, 729
MluCI AATT 5 cut(s) 461, 554, 592, 638, 748
MmeI TCCRAC 2 cut(s) 437, 697
MnlI CCTC 7 cut(s) 15, 203, 208, 436, 460, 700, 739
Mph1103I ATGCAT 3 cut(s) 15, 52, 311
MseI TTAA 4 cut(s) 128, 528, 653, 713
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 147, 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 4 cut(s) 10, 74, 167, 707
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 247
NdeII GATC 4 cut(s) 231, 268, 421, 762
NlaIII CATG 6 cut(s) 13, 17, 50, 251, 259, 618
NlaIV GGNNCC 2 cut(s) 245, 253
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 3 cut(s) 326, 446, 603
NsiI ATGCAT 3 cut(s) 15, 52, 311
NspI RCATGY 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 682
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 434
PkrI GCNGC 5 cut(s) 67, 70, 580, 697, 700
PshBI ATTAAT 1 cut(s) 713
Psp6I CCWGG 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 245, 253
PspPI GGNCC 1 cut(s) 410
PspXI VCTCGAGB 1 cut(s) 682
PstI CTGCAG 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 434
RsaI GTAC 3 cut(s) 101, 274, 680
RsaNI GTAC 3 cut(s) 100, 273, 679
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 4 cut(s) 128, 528, 653, 713
SatI GCNGC 5 cut(s) 66, 69, 579, 696, 699
Sau3AI GATC 4 cut(s) 231, 268, 421, 762
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 2 cut(s) 101, 680
ScrFI CCNGG 2 cut(s) 147, 348
SduI GDGCHC 4 cut(s) 147, 385, 622, 729
SfaNI GCATC 2 cut(s) 249, 590
SfcI CTRYAG 2 cut(s) 514, 696
Sfr274I CTCGAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 682
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 682
SmoI CTYRAG 1 cut(s) 682
Sse9I AATT 5 cut(s) 461, 554, 592, 638, 748
SsiI CCGC 3 cut(s) 30, 68, 161
SspMI CTAG 4 cut(s) 281, 572, 659, 702
StyD4I CCNGG 2 cut(s) 145, 346
StyI CCWWGG 3 cut(s) 247, 546, 571
TaaI ACNGT 2 cut(s) 395, 678
TaiI ACGT 2 cut(s) 419, 509
TaqI TCGA 2 cut(s) 398, 683
TasI AATT 5 cut(s) 461, 554, 592, 638, 748
TatI WGTACW 2 cut(s) 99, 678
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 4 cut(s) 128, 528, 653, 713
Tru9I TTAA 4 cut(s) 128, 528, 653, 713
TseFI GTSAC 3 cut(s) 326, 446, 603
TseI GCWGC 4 cut(s) 65, 578, 695, 698
Tsp45I GTSAC 3 cut(s) 326, 446, 603
Tth111I GACNNNGTC 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 713
XapI RAATTY 1 cut(s) 638
XceI RCATGY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 682
XmaJI CCTAGG 1 cut(s) 571
XspI CTAG 4 cut(s) 281, 572, 659, 702
ZrmI AGTACT 2 cut(s) 101, 680
Zsp2I ATGCAT 3 cut(s) 15, 52, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.