Rh3CG326700

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000734
Physical Location & Seq
Reverse (-)
35614430 .. 35620808
6379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG326700.1

Sequence Viewer

Length: 597 bp
ATGCCTCTAAACAGAGAGATCGATCAGAATTGGACCAGCATGGATGGAAACAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGAGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACTATCAAGAAGCAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACTCTGTTAAATGCAATCCACACCCGGATCTCCTCGCCACCTTGGTTGCTCATGGCTCAAGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATTGCATTATCTATCCTAATCCTTGTAAAGCTTGCTCTCACATCAAGTATGCTGCCGCAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGATAAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACGAGAGTGCATGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

6.3

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 66 - 184 7e-35 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
Acc36I ACCTGC 1 cut(s) 538
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 2 cut(s) 426, 514
AclWI GGATC 2 cut(s) 285, 472
AcoI YGGCCR 1 cut(s) 552
AfaI GTAC 2 cut(s) 109, 570
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 2 cut(s) 59, 341
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 2 cut(s) 401, 524
AluI AGCT 2 cut(s) 401, 524
Alw21I GWGCWC 2 cut(s) 76, 578
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 2 cut(s) 285, 472
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 1 cut(s) 552
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 154, 422
AspS9I GGNCC 2 cut(s) 33, 238
AsuC2I CCSGG 2 cut(s) 275, 494
AvaII GGWCC 2 cut(s) 33, 238
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 554
Bbv12I GWGCWC 2 cut(s) 76, 578
BbvI GCAGC 2 cut(s) 166, 409
BccI CCATC 2 cut(s) 38, 229
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 2 cut(s) 275, 494
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 538
BisI GCNGC 3 cut(s) 155, 423, 426
BlsI GCNGC 3 cut(s) 156, 424, 427
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 217, 275, 494
Bme18I GGWCC 2 cut(s) 33, 238
BmgT120I GGNCC 2 cut(s) 33, 238
BmrFI CCNGG 3 cut(s) 217, 275, 494
BmsI GCATC 1 cut(s) 525
BpmI CTGGAG 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 2 cut(s) 275, 494
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 526
Bsc4I CCNNNNNNNGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 95, 324
BseRI GAGGAG 1 cut(s) 272
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 166, 409
BshFI GGCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 2 cut(s) 76, 578
BsiSI CCGG 3 cut(s) 275, 494, 527
BslI CCNNNNNNNGG 1 cut(s) 235
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 2 cut(s) 76, 578
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 4 cut(s) 18, 22, 277, 477
BspACI CCGC 2 cut(s) 426, 514
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 2 cut(s) 96, 325
BspDI ATCGAT 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 526
BspHI TCATGA 2 cut(s) 87, 112
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 2 cut(s) 285, 472
BspQI GCTCTTC 1 cut(s) 583
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 4 cut(s) 18, 22, 277, 477
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 320, 573
Bst6I CTCTTC 1 cut(s) 583
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 3 cut(s) 68, 104, 333
BstF5I GGATG 1 cut(s) 49
BstKTI GATC 4 cut(s) 21, 25, 280, 480
BstMBI GATC 4 cut(s) 18, 22, 277, 477
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 3 cut(s) 215, 273, 492
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 166, 409
BstX2I RGATCY 2 cut(s) 277, 477
BstYI RGATCY 2 cut(s) 277, 477
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 1 cut(s) 554
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 1 cut(s) 49
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 1 cut(s) 403
CciI TCATGA 2 cut(s) 87, 112
Cfr13I GGNCC 2 cut(s) 33, 238
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 2 cut(s) 108, 569
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 6 cut(s) 40, 88, 113, 208, 302, 540
CviJI RGCY 6 cut(s) 103, 306, 353, 401, 524, 554
CviKI_1 RGCY 6 cut(s) 103, 306, 353, 401, 524, 554
CviQI GTAC 2 cut(s) 108, 569
DdeI CTNAG 3 cut(s) 68, 104, 333
DpnI GATC 4 cut(s) 20, 24, 279, 479
DpnII GATC 4 cut(s) 18, 22, 277, 477
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 583
EarI CTCTTC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 2 cut(s) 33, 238
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 6 cut(s) 43, 91, 116, 211, 305, 543
FaiI YATR 8 cut(s) 41, 89, 114, 209, 303, 420, 474, 541
FatI CATG 6 cut(s) 39, 87, 112, 207, 301, 539
Fnu4HI GCNGC 3 cut(s) 155, 423, 426
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 3 cut(s) 155, 423, 426
FspBI CTAG 1 cut(s) 125
GluI GCNGC 3 cut(s) 155, 423, 426
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 554
HapII CCGG 3 cut(s) 275, 494, 527
Hin1II CATG 6 cut(s) 43, 91, 116, 211, 305, 543
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 399
HinfI GANTC 2 cut(s) 341, 455
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 3 cut(s) 275, 494, 527
Hpy166II GTNNAC 2 cut(s) 74, 439
Hpy188I TCNGA 4 cut(s) 27, 234, 334, 482
Hpy188III TCNNGA 6 cut(s) 88, 113, 148, 368, 527, 582
Hpy8I GTNNAC 2 cut(s) 74, 439
HpyAV CCTTC 2 cut(s) 239, 256
HpyCH4III ACNGT 2 cut(s) 320, 573
HpyCH4IV ACGT 2 cut(s) 177, 223
HpyCH4V TGCA 6 cut(s) 74, 264, 323, 375, 490, 539
HpyF3I CTNAG 3 cut(s) 68, 104, 333
HpySE526I ACGT 2 cut(s) 177, 223
Hsp92II CATG 6 cut(s) 43, 91, 116, 211, 305, 543
Kpn2I TCCGGA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 439
Kzo9I GATC 4 cut(s) 18, 22, 277, 477
LguI GCTCTTC 1 cut(s) 583
LmnI GCTCC 2 cut(s) 529, 544
Lsp1109I GCAGC 2 cut(s) 166, 409
LweI GCATC 1 cut(s) 525
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 177, 223
MaeIII GTNAC 1 cut(s) 224
MalI GATC 4 cut(s) 20, 24, 279, 479
MboI GATC 4 cut(s) 18, 22, 277, 477
MboII GAAGA 2 cut(s) 570, 597
MflI RGATCY 2 cut(s) 277, 477
MhlI GDGCHC 2 cut(s) 76, 578
MlsI TGGCCA 1 cut(s) 554
MluCI AATT 3 cut(s) 28, 94, 485
MluNI TGGCCA 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 4 cut(s) 15, 157, 215, 293
Mox20I TGGCCA 1 cut(s) 554
MroI TCCGGA 1 cut(s) 526
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 201, 258, 438
Msp20I TGGCCA 1 cut(s) 554
MspI CCGG 3 cut(s) 275, 494, 527
MspR9I CCNGG 3 cut(s) 217, 275, 494
MvaI CCWGG 1 cut(s) 217
NciI CCSGG 2 cut(s) 275, 494
NdeII GATC 4 cut(s) 18, 22, 277, 477
NlaIII CATG 6 cut(s) 43, 91, 116, 211, 305, 543
PagI TCATGA 2 cut(s) 87, 112
PaqCI CACCTGC 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 583
PfeI GAWTC 2 cut(s) 341, 455
PkrI GCNGC 3 cut(s) 156, 424, 427
Ppu21I YACGTR 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspPI GGNCC 2 cut(s) 33, 238
PsrI GAACNNNNNNTAC 2 cut(s) 453, 485
PsuI RGATCY 2 cut(s) 277, 477
RsaI GTAC 2 cut(s) 109, 570
RsaNI GTAC 2 cut(s) 108, 569
SapI GCTCTTC 1 cut(s) 583
SaqAI TTAA 3 cut(s) 201, 258, 438
SatI GCNGC 3 cut(s) 155, 423, 426
Sau3AI GATC 4 cut(s) 18, 22, 277, 477
Sau96I GGNCC 2 cut(s) 33, 238
ScaI AGTACT 1 cut(s) 109
ScrFI CCNGG 3 cut(s) 217, 275, 494
SduI GDGCHC 2 cut(s) 76, 578
SfaNI GCATC 1 cut(s) 525
SinI GGWCC 2 cut(s) 33, 238
SmlI CTYRAG 1 cut(s) 307
SmoI CTYRAG 1 cut(s) 307
Sse9I AATT 3 cut(s) 28, 94, 485
SsiI CCGC 2 cut(s) 426, 514
SspI AATATT 1 cut(s) 119
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 3 cut(s) 215, 273, 492
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 320, 573
TaiI ACGT 2 cut(s) 180, 226
TaqI TCGA 3 cut(s) 21, 140, 315
TaqII GACCGA 1 cut(s) 318
TasI AATT 3 cut(s) 28, 94, 485
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 428
TfiI GAWTC 2 cut(s) 341, 455
Tru1I TTAA 3 cut(s) 201, 258, 438
Tru9I TTAA 3 cut(s) 201, 258, 438
TseI GCWGC 2 cut(s) 154, 422
TspDTI ATGAA 2 cut(s) 129, 461
VneI GTGCAC 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 33, 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XspI CTAG 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.