Rmu_sc0001459.1_g000007

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001459.1
OG0000734
Physical Location & Seq
Forward (+)
27408 .. 29578
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001459.1_g000007.1.cds

Sequence Viewer

Length: 1539 bp
atggatgtaaatagcgttgaaccccgactaagtgcaccagataaggtcatgagcaattacgggctgactactcatgaatatttcctagagaaaatcatttcgacgatcaagaaacagcgaagtgaggaagcattttacgtgctggatttaggtgttgtcattaacctcatggacacctggaaacataaccttccgatggtccaacccttctacgctgttaaatgcaatccacacccggatctcctcgccaccttggttgctcaaggctcaagtttcgactgtgcaagtcggtctgagattgaatccattttggctctgggagtttctccagatcgcattatctatgctaatccttgtaaagcttgctctcacatcaagtatgctgccgcagttggcgttaacctaaccacttttgattcagtagatgaggttcataagatccgaaaattgcacccggaatgttctttactaatccgcatcaaagctccggacgagagtgggagcaggtggccaatgagttccaagtacggtgctcttcccgacgaagtgcctaagctcctccaagccgctcaaactaaaggactcaaagttcttggggtatcatttcatatagggagtaactcccacaattatcaagcatataaaacagcaatacaggcagtcaaggcggtttttcaggaggcggataggctctgcatgcctcccatgcatgtgttgaacattggcggtggcttcgtgtcccatgcattgtgctttgtagctgcggcaacagccgtgaaaactgccgtggaaaagtacttttcaaaagtggagcgacaaaacttaacgatgatggccgagcccggtcggttctttgcggagacggctttcacgcttgccaccaacatcattgggaagcgagtgagaggggaggtcagacattactggatcaacgaagggttccatggctccatgatgcgcgtggatcgtacagcgctagttgaatcgtgcatttctctgaaatgcatgtccaataacagtagtgacgacaatgagaagaacccaggcattatggtatgtggtaaaggtgtcggtggtgctcgcacttacagttcgattgtgtttggtccgacgtgtgatcccattgacaaggtcttggagggtcaccagctaccagaattggaggtgaatgattggctggtaggtaaaggacctgccgccaccaagccaaggctatcttctgcaatcccatactcatccggtggcattctaatatcgcctcgtcggcattgggatgctgccggacaggttgatgttttctccggattgttgcaagctgctgtcggtgtgcatcgtttcaggattgaagaggaggcggcgaactgggattgggcccaagcaagtgcggcggtgaggcggcttgggaagcggtggattctcacctatttgggttgtggatctacctttttgcaggtcattctttctttcgtccttgagtgggcaacggtggtgattcctgaagcgaaagcgagggcaggcggcggtggttctgtgcggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

512

Amino Acids

56.04

Weight (kDa)

8.6

Isoelectric Point (pI)

46.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 495
Acc36I ACCTGC 3 cut(s) 495, 1201, 1441
AccBSI CCGCTC 1 cut(s) 569
AccII CGCG 1 cut(s) 960
AccIII TCCGGA 2 cut(s) 487, 1301
AclWI GGATC 6 cut(s) 246, 433, 935, 972, 1112, 1444
AcoI YGGCCR 2 cut(s) 509, 834
AcuI CTGAAG 1 cut(s) 1518
AfaI GTAC 3 cut(s) 527, 797, 970
AfeI AGCGCT 1 cut(s) 975
AfiI CCNNNNNNNGG 3 cut(s) 196, 1209, 1477
AflIII ACRYGT 1 cut(s) 1112
AgsI TTSAA 6 cut(s) 20, 302, 718, 804, 983, 1346
AjiI CACGTC 1 cut(s) 1113
AjnI CCWGG 2 cut(s) 176, 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 1201, 1233
AloI GAACNNNNNNTCC 2 cut(s) 573, 605
AluBI AGCT 6 cut(s) 362, 485, 556, 761, 1150, 1316
AluI AGCT 6 cut(s) 362, 485, 556, 761, 1150, 1316
Alw21I GWGCWC 3 cut(s) 37, 535, 1081
Alw26I GTCTC 1 cut(s) 854
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 6 cut(s) 246, 433, 935, 972, 1112, 1444
Aor13HI TCCGGA 2 cut(s) 487, 1301
Aor51HI AGCGCT 1 cut(s) 975
AoxI GGCC 3 cut(s) 509, 834, 1371
ApaI GGGCCC 1 cut(s) 1375
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 4 cut(s) 383, 761, 1277, 1316
AspLEI GCGC 2 cut(s) 960, 976
AspS9I GGNCC 5 cut(s) 199, 1106, 1190, 1371, 1372
AsuC2I CCSGG 3 cut(s) 236, 455, 843
AsuHPI GGTGA 5 cut(s) 1136, 1177, 1402, 1411, 1501
AvaII GGWCC 3 cut(s) 199, 1106, 1190
BaeGI GKGCMC 2 cut(s) 37, 1375
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 2 cut(s) 843, 1375
Bbv12I GWGCWC 3 cut(s) 37, 535, 1081
BbvI GCAGC 4 cut(s) 370, 748, 1264, 1303
BccI CCATC 2 cut(s) 190, 826
BceAI ACGGC 3 cut(s) 758, 770, 879
BciT130I CCWGG 2 cut(s) 178, 1044
BcnI CCSGG 3 cut(s) 236, 455, 843
BcoDI GTCTC 1 cut(s) 854
BfaI CTAG 2 cut(s) 86, 977
BfoI RGCGCY 1 cut(s) 977
BfuAI ACCTGC 3 cut(s) 495, 1201, 1441
BglI GCCNNNNNGGC 1 cut(s) 1264
BmcAI AGTACT 1 cut(s) 797
Bme1390I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
Bme18I GGWCC 3 cut(s) 199, 1106, 1190
BmgBI CACGTC 1 cut(s) 1113
BmgT120I GGNCC 5 cut(s) 199, 1106, 1190, 1371, 1372
BmiI GGNNCC 3 cut(s) 941, 949, 1373
BmrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
BmrI ACTGGG 1 cut(s) 1372
BmsI GCATC 4 cut(s) 486, 945, 1264, 1339
BmuI ACTGGG 1 cut(s) 1372
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 552
BpuEI CTTGAG 3 cut(s) 246, 253, 1493
BpuMI CCSGG 3 cut(s) 236, 455, 843
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 5 cut(s) 252, 786, 943, 1042, 1208
BsaWI WCCGGW 3 cut(s) 487, 1238, 1301
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 1209, 1477
Bse1I ACTGG 2 cut(s) 929, 1367
BseAI TCCGGA 2 cut(s) 487, 1301
BseBI CCWGG 2 cut(s) 178, 1044
BseDI CCNNGG 5 cut(s) 252, 786, 943, 1042, 1208
BseGI GGATG 3 cut(s) 10, 1235, 1279
BseLI CCNNNNNNNGG 3 cut(s) 196, 1209, 1477
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 929, 1367
BseRI GAGGAG 3 cut(s) 233, 548, 1364
BseSI GKGCMC 2 cut(s) 37, 1375
BseXI GCAGC 4 cut(s) 370, 748, 1264, 1303
Bsh1236I CGCG 1 cut(s) 960
Bsh1285I CGRYCG 1 cut(s) 847
BshFI GGCC 3 cut(s) 511, 836, 1373
BsiEI CGRYCG 1 cut(s) 847
BsiHKAI GWGCWC 3 cut(s) 37, 535, 1081
BsiSI CCGG 7 cut(s) 236, 455, 488, 843, 1239, 1281, 1302
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 3 cut(s) 196, 1209, 1477
BsmAI GTCTC 1 cut(s) 854
BsmBI CGTCTC 1 cut(s) 854
BsmFI GGGAC 1 cut(s) 724
BsmI GAATGC 1 cut(s) 1245
BsnI GGCC 3 cut(s) 511, 836, 1373
Bsp120I GGGCCC 1 cut(s) 1371
Bsp1286I GDGCHC 5 cut(s) 37, 535, 843, 1081, 1375
Bsp13I TCCGGA 2 cut(s) 487, 1301
Bsp143I GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
Bsp19I CCATGG 1 cut(s) 943
BspANI GGCC 3 cut(s) 511, 836, 1373
BspCNI CTCAG 1 cut(s) 286
BspEI TCCGGA 2 cut(s) 487, 1301
BspFNI CGCG 1 cut(s) 960
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 3 cut(s) 941, 949, 1373
BspMI ACCTGC 3 cut(s) 495, 1201, 1441
BspPI GGATC 6 cut(s) 246, 433, 935, 972, 1112, 1444
BspQI GCTCTTC 1 cut(s) 540
BsrBI CCGCTC 1 cut(s) 569
BsrI ACTGG 2 cut(s) 929, 1367
BssECI CCNNGG 5 cut(s) 252, 786, 943, 1042, 1208
BssMI GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
BssT1I CCWWGG 3 cut(s) 252, 943, 1208
Bst2UI CCWGG 2 cut(s) 178, 1044
Bst4CI ACNGT 5 cut(s) 281, 530, 1019, 1091, 1486
Bst6I CTCTTC 2 cut(s) 540, 1341
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 6 cut(s) 364, 698, 876, 1081, 1314, 1516
BstDEI CTNAG 3 cut(s) 29, 294, 552
BstDSI CCRYGG 2 cut(s) 786, 943
BstEII GGTNACC 1 cut(s) 1142
BstF5I GGATG 3 cut(s) 10, 1235, 1279
BstFNI CGCG 1 cut(s) 960
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 2 cut(s) 960, 976
BstKTI GATC 8 cut(s) 108, 241, 334, 441, 930, 967, 1120, 1439
BstMAI GTCTC 1 cut(s) 854
BstMBI GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
BstMCI CGRYCG 1 cut(s) 847
BstMWI GCNNNNNNNGC 9 cut(s) 656, 665, 697, 706, 770, 863, 1264, 1385, 1405
BstNI CCWGG 2 cut(s) 178, 1044
BstNSI RCATGY 3 cut(s) 700, 713, 1009
BstPI GGTNACC 1 cut(s) 1142
BstSCI CCNGG 5 cut(s) 176, 234, 453, 841, 1042
BstSLI GKGCMC 2 cut(s) 37, 1375
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 4 cut(s) 370, 748, 1264, 1303
BstX2I RGATCY 3 cut(s) 238, 438, 1436
BstYI RGATCY 3 cut(s) 238, 438, 1436
BsuRI GGCC 3 cut(s) 511, 836, 1373
BtgI CCRYGG 2 cut(s) 786, 943
BtrI CACGTC 1 cut(s) 1113
BtsCI GGATG 3 cut(s) 10, 1235, 1279
BveI ACCTGC 3 cut(s) 495, 1201, 1441
Cac8I GCNNGC 6 cut(s) 364, 698, 876, 1081, 1314, 1516
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 2 cut(s) 960, 976
Cfr13I GGNCC 5 cut(s) 199, 1106, 1190, 1371, 1372
Csp6I GTAC 3 cut(s) 526, 796, 969
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviQI GTAC 3 cut(s) 526, 796, 969
DdeI CTNAG 3 cut(s) 29, 294, 552
DpnI GATC 8 cut(s) 107, 240, 333, 440, 929, 966, 1119, 1438
DpnII GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
EaeI YGGCCR 2 cut(s) 509, 834
Eam1104I CTCTTC 2 cut(s) 540, 1341
EarI CTCTTC 2 cut(s) 540, 1341
EciI GGCGGA 1 cut(s) 698
Eco130I CCWWGG 3 cut(s) 252, 943, 1208
Eco24I GRGCYC 2 cut(s) 843, 1375
Eco47I GGWCC 3 cut(s) 199, 1106, 1190
Eco47III AGCGCT 1 cut(s) 975
Eco57I CTGAAG 1 cut(s) 1518
Eco91I GGTNACC 1 cut(s) 1142
EcoO109I RGGNCCY 1 cut(s) 1190
EcoO65I GGTNACC 1 cut(s) 1142
EcoRII CCWGG 2 cut(s) 176, 1042
EcoT14I CCWWGG 3 cut(s) 252, 943, 1208
EcoT22I ATGCAT 3 cut(s) 711, 748, 1007
EcoT38I GRGCYC 2 cut(s) 843, 1375
ErhI CCWWGG 3 cut(s) 252, 943, 1208
Esp3I CGTCTC 1 cut(s) 854
FalI AAGNNNNNCTT 2 cut(s) 1201, 1233
FaqI GGGAC 1 cut(s) 724
FokI GGATG 3 cut(s) 17, 1222, 1286
FriOI GRGCYC 2 cut(s) 843, 1375
FspBI CTAG 2 cut(s) 86, 977
GlaI GCGC 2 cut(s) 959, 975
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 3 cut(s) 511, 836, 1373
HapII CCGG 7 cut(s) 236, 455, 488, 843, 1239, 1281, 1302
HhaI GCGC 2 cut(s) 960, 976
Hin6I GCGC 2 cut(s) 958, 974
HinP1I GCGC 2 cut(s) 958, 974
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 6 cut(s) 302, 416, 582, 983, 1414, 1492
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 7 cut(s) 236, 455, 488, 843, 1239, 1281, 1302
HphI GGTGA 5 cut(s) 1136, 1177, 1402, 1411, 1501
Hpy166II GTNNAC 2 cut(s) 35, 400
Hpy188I TCNGA 6 cut(s) 195, 295, 443, 917, 999, 1110
Hpy8I GTNNAC 2 cut(s) 35, 400
Hpy99I CGWCG 4 cut(s) 106, 545, 1114, 1266
HpyAV CCTTC 3 cut(s) 200, 217, 929
HpyCH4III ACNGT 5 cut(s) 281, 530, 1019, 1091, 1486
HpyCH4IV ACGT 2 cut(s) 138, 1112
HpyF10VI GCNNNNNNNGC 9 cut(s) 656, 665, 697, 706, 770, 863, 1264, 1385, 1405
HpyF3I CTNAG 3 cut(s) 29, 294, 552
HpySE526I ACGT 2 cut(s) 138, 1112
HspAI GCGC 2 cut(s) 958, 974
Kpn2I TCCGGA 2 cut(s) 487, 1301
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
LguI GCTCTTC 1 cut(s) 540
LmnI GCTCC 5 cut(s) 490, 501, 561, 811, 953
Lsp1109I GCAGC 4 cut(s) 370, 748, 1264, 1303
LweI GCATC 4 cut(s) 486, 945, 1264, 1339
MaeI CTAG 2 cut(s) 86, 977
MaeII ACGT 2 cut(s) 138, 1112
MaeIII GTNAC 3 cut(s) 617, 1022, 1142
MalI GATC 8 cut(s) 107, 240, 333, 440, 929, 966, 1119, 1438
MbiI CCGCTC 1 cut(s) 569
MboI GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
MboII GAAGA 4 cut(s) 527, 1048, 1209, 1358
MflI RGATCY 3 cut(s) 238, 438, 1436
MhlI GDGCHC 5 cut(s) 37, 535, 843, 1081, 1375
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 4 cut(s) 55, 446, 628, 1157
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 576
MmeI TCCRAC 2 cut(s) 226, 1133
Mox20I TGGCCA 1 cut(s) 511
Mph1103I ATGCAT 3 cut(s) 711, 748, 1007
MroI TCCGGA 2 cut(s) 487, 1301
MscI TGGCCA 1 cut(s) 511
MseI TTAA 4 cut(s) 162, 219, 399, 824
MslI CAYNNNNRTG 2 cut(s) 710, 1272
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 7 cut(s) 236, 455, 488, 843, 1239, 1281, 1302
MspR9I CCNGG 5 cut(s) 178, 236, 455, 843, 1044
Mva1269I GAATGC 1 cut(s) 1245
MvaI CCWGG 2 cut(s) 178, 1044
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 9 cut(s) 656, 665, 697, 706, 770, 863, 1264, 1385, 1405
NciI CCSGG 3 cut(s) 236, 455, 843
NcoI CCATGG 1 cut(s) 943
NdeII GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
NlaIV GGNNCC 3 cut(s) 941, 949, 1373
NmeAIII GCCGAG 1 cut(s) 862
NmuCI GTSAC 2 cut(s) 1022, 1142
NsiI ATGCAT 3 cut(s) 711, 748, 1007
NspI RCATGY 3 cut(s) 700, 713, 1009
PaeI GCATGC 1 cut(s) 700
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 495
PciSI GCTCTTC 1 cut(s) 540
PctI GAATGC 1 cut(s) 1245
PfeI GAWTC 5 cut(s) 302, 416, 983, 1414, 1492
PflFI GACNNNGTC 1 cut(s) 1130
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 1190
Psp5II RGGWCCY 1 cut(s) 1190
Psp6I CCWGG 2 cut(s) 176, 1042
PspEI GGTNACC 1 cut(s) 1142
PspGI CCWGG 2 cut(s) 176, 1042
PspN4I GGNNCC 3 cut(s) 941, 949, 1373
PspOMI GGGCCC 1 cut(s) 1371
PspPI GGNCC 5 cut(s) 199, 1106, 1190, 1371, 1372
PspPPI RGGWCCY 1 cut(s) 1190
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PsuI RGATCY 3 cut(s) 238, 438, 1436
PsyI GACNNNGTC 1 cut(s) 1130
RsaI GTAC 3 cut(s) 527, 797, 970
RsaNI GTAC 3 cut(s) 526, 796, 969
RseI CAYNNNNRTG 2 cut(s) 710, 1272
SapI GCTCTTC 1 cut(s) 540
SaqAI TTAA 4 cut(s) 162, 219, 399, 824
Sau3AI GATC 8 cut(s) 105, 238, 331, 438, 927, 964, 1117, 1436
Sau96I GGNCC 5 cut(s) 199, 1106, 1190, 1371, 1372
ScaI AGTACT 1 cut(s) 797
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 5 cut(s) 178, 236, 455, 843, 1044
SduI GDGCHC 5 cut(s) 37, 535, 843, 1081, 1375
SfaNI GCATC 4 cut(s) 486, 945, 1264, 1339
SinI GGWCC 3 cut(s) 199, 1106, 1190
SmiMI CAYNNNNRTG 2 cut(s) 710, 1272
SmlI CTYRAG 3 cut(s) 261, 268, 1472
SmoI CTYRAG 3 cut(s) 261, 268, 1472
SphI GCATGC 1 cut(s) 700
Sse9I AATT 4 cut(s) 55, 446, 628, 1157
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 977
StyD4I CCNGG 5 cut(s) 176, 234, 453, 841, 1042
StyI CCWWGG 3 cut(s) 252, 943, 1208
TaaI ACNGT 5 cut(s) 281, 530, 1019, 1091, 1486
TaiI ACGT 2 cut(s) 141, 1115
TaqI TCGA 3 cut(s) 101, 276, 1094
TaqII GACCGA 1 cut(s) 279
TasI AATT 4 cut(s) 55, 446, 628, 1157
TatI WGTACW 1 cut(s) 795
TauI GCSGC 8 cut(s) 389, 569, 767, 1199, 1358, 1388, 1399, 1521
TfiI GAWTC 5 cut(s) 302, 416, 983, 1414, 1492
Tru1I TTAA 4 cut(s) 162, 219, 399, 824
Tru9I TTAA 4 cut(s) 162, 219, 399, 824
TseFI GTSAC 2 cut(s) 1022, 1142
TseI GCWGC 4 cut(s) 383, 761, 1277, 1316
Tsp45I GTSAC 2 cut(s) 1022, 1142
TspDTI ATGAA 3 cut(s) 90, 422, 596
Tth111I GACNNNGTC 1 cut(s) 1130
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 3 cut(s) 199, 1106, 1190
XceI RCATGY 3 cut(s) 700, 713, 1009
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 958
XspI CTAG 2 cut(s) 86, 977
ZrmI AGTACT 1 cut(s) 797
Zsp2I ATGCAT 3 cut(s) 711, 748, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.