pycom05g02700

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000734
Physical Location & Seq
Reverse (-)
3189602 .. 3190795
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02700.1

Sequence Viewer

Length: 1194 bp
ATGTTCCAACTGACATACCAAGACACCAACTCACCGCTCTCATCAGATCGATCCATCATCAACAAACATGACGAACCACAACCCTTTTACGTTCTCGATTTGGGAGTTCTTGTCAGCCTTATGCAAAAATGGAACCGTTGCCTTCCCAACGTTCTGCCCTTCTTTGCTGTCAAGTGTAACCCTGAGCCTGCATTCATTGCAGCATTGGCAACGCTTGGTGCGAGCTTTGACTGCGCTAGCAAGCTGGAGATCGAGGCCATCCTTTCTCATGGTGTAAGCCCCTCAAGGATAGTCTACGCCAATCCATGCAAGGGTGAGAACCATTTAAGGCACGCAGCTGGAGTCGGGGTCAATCTTGCAACCTTTGACTCCATAGACGAACTTAACAAGATAAAAAAATGCCATCCCAAATGTTCCTTGTTGCTCCGAATTGCAGTCCTAAATGACACGAGCTCCTGGCGATCATTTGGGACCAAATTCGGTGCGATGTCTGAGGAGGTCGCGCCTCTACTTGGACATGCACACAAACTAGGGTTGAGAGTGGTGGGAGTTTCATTTCACGTGGGTTCGAAAGCTTCGGAATCTCAAGTGTACCGTGGAGCAATAGCAGCTGCTAGGGCTGCATTCGACAAGGCAGATGAGCTCAAACTGCCCAAAATGCATGTGCTTGATATTGGTGGTGGGTTCAAGGCAAACCCGTTATTTGATGAAATAGCCGAAACCCTAAACGACGCCATTAAAGAACACTTTGGTGATCATCAATCGGAGTCTGATCTGGTGGTGATGGCTGAGCCAGGAAGGTTCTTTGCCGAAACAGCTTTCACATTGGTTGCAAATGTGATGGGGAAGAGAGTGAGAGGAGAGAAAAGAGAGTATTGGATTACTGATGGGATATATGAGTCGTTTAATCTTCCGGCATTTGATAAATCTTGTTTGACAGTTTCACCCCTCCTCCTTCACACTCCTGATCATCATCATCATCCAGTAGCCATATATTCGTCGACGGTGTTCGGACCAACCTGTGATTCTCTGGACACGGTGGTGGCTGACTGCAAACTGCCGGAACTGAAGTTAAATGATTATCTCGTGTTTCATAACATGGGGGCTTACACAAGTTCTGCTGGAACCAACTTTAATGGCCTCTGCATTTCTGCTATTCCCACGTACTTGGCATTTACAATTGCTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

398

Amino Acids

43.43

Weight (kDa)

6.09

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 29 - 368 2.2e-17 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 37 - 270 4.4e-64 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AccI GTMKAC 2 cut(s) 294, 1001
AccII CGCG 1 cut(s) 503
AciI CCGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 150
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 1 cut(s) 476
AcuI CTGAAG 1 cut(s) 1088
AcvI CACGTG 1 cut(s) 562
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 2 cut(s) 593, 1166
AfiI CCNNNNNNNGG 2 cut(s) 311, 512
AgsI TTSAA 1 cut(s) 688
AjnI CCWGG 2 cut(s) 455, 793
AjuI GAANNNNNNNTTGG 2 cut(s) 1009, 1041
AleI CACNNNNGTG 2 cut(s) 750, 1040
AluBI AGCT 8 cut(s) 225, 244, 338, 453, 575, 611, 643, 818
AluI AGCT 8 cut(s) 225, 244, 338, 453, 575, 611, 643, 818
Alw21I GWGCWC 2 cut(s) 455, 645
AlwI GGATC 1 cut(s) 45
AoxI GGCC 2 cut(s) 255, 1138
ApeKI GCWGC 5 cut(s) 200, 335, 608, 611, 620
ApoI RAATTY 1 cut(s) 476
AspLEI GCGC 2 cut(s) 236, 505
AspS9I GGNCC 2 cut(s) 471, 1013
AsuHPI GGTGA 5 cut(s) 24, 326, 764, 793, 936
AsuII TTCGAA 1 cut(s) 569
AsuNHI GCTAGC 1 cut(s) 236
AvaII GGWCC 2 cut(s) 471, 1013
BanII GRGCYC 2 cut(s) 455, 645
BauI CACGAG 2 cut(s) 448, 1085
BbrPI CACGTG 1 cut(s) 562
Bbv12I GWGCWC 2 cut(s) 455, 645
BbvI GCAGC 5 cut(s) 212, 347, 598, 607, 620
BccI CCATC 6 cut(s) 62, 266, 411, 778, 835, 881
BciT130I CCWGG 2 cut(s) 457, 795
BclI TGATCA 2 cut(s) 754, 967
BfaI CTAG 3 cut(s) 237, 530, 615
BisI GCNGC 5 cut(s) 201, 336, 609, 612, 621
BlpI GCTNAGC 1 cut(s) 789
BlsI GCNGC 5 cut(s) 202, 337, 610, 613, 622
Bme1390I CCNGG 2 cut(s) 457, 795
Bme18I GGWCC 2 cut(s) 471, 1013
BmgT120I GGNCC 2 cut(s) 471, 1013
BmiI GGNNCC 3 cut(s) 134, 472, 1126
BmrFI CCNGG 2 cut(s) 457, 795
BmtI GCTAGC 1 cut(s) 240
BpmI CTGGAG 2 cut(s) 266, 360
Bpu10I CCTNAGC 1 cut(s) 183
Bpu1102I GCTNAGC 1 cut(s) 789
Bpu14I TTCGAA 1 cut(s) 569
BpuEI CTTGAG 2 cut(s) 268, 570
Bsa29I ATCGAT 1 cut(s) 49
BsaAI YACGTR 2 cut(s) 562, 1164
BsaBI GATNNNNATC 1 cut(s) 972
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 1 cut(s) 595
BsaXI ACNNNNNCTCC 8 cut(s) 96, 126, 333, 363, 437, 467, 936, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 512
Bse1I ACTGG 1 cut(s) 983
Bse3DI GCAATG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 972
BseBI CCWGG 2 cut(s) 457, 795
BseCI ATCGAT 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 595
BseGI GGATG 3 cut(s) 258, 403, 979
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 2 cut(s) 311, 512
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 3 cut(s) 174, 483, 780
BseNI ACTGG 1 cut(s) 983
BseRI GAGGAG 3 cut(s) 509, 873, 941
BseXI GCAGC 5 cut(s) 212, 347, 598, 607, 620
Bsh1236I CGCG 1 cut(s) 503
BshFI GGCC 2 cut(s) 257, 1140
BshVI ATCGAT 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 455, 645
BsiSI CCGG 2 cut(s) 914, 1061
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 2 cut(s) 311, 512
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 2 cut(s) 191, 623
BsnI GGCC 2 cut(s) 257, 1140
Bsp119I TTCGAA 1 cut(s) 569
Bsp1286I GDGCHC 2 cut(s) 455, 645
Bsp143I GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
Bsp1720I GCTNAGC 1 cut(s) 789
BspACI CCGC 1 cut(s) 35
BspANI GGCC 2 cut(s) 257, 1140
BspCNI CTCAG 3 cut(s) 175, 484, 781
BspDI ATCGAT 1 cut(s) 49
BspFNI CGCG 1 cut(s) 503
BspLI GGNNCC 3 cut(s) 134, 472, 1126
BspOI GCTAGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 45
BspT104I TTCGAA 1 cut(s) 569
BsrBI CCGCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 983
BssECI CCNNGG 1 cut(s) 595
BssMI GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 2 cut(s) 448, 1085
Bst2BI CACGAG 2 cut(s) 448, 1085
Bst2UI CCWGG 2 cut(s) 457, 795
Bst4CI ACNGT 5 cut(s) 137, 596, 940, 1006, 1039
Bst6I CTCTTC 1 cut(s) 842
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 197
BstBAI YACGTR 2 cut(s) 562, 1164
BstBI TTCGAA 1 cut(s) 569
BstC8I GCNNGC 5 cut(s) 189, 223, 238, 242, 333
BstDEI CTNAG 3 cut(s) 183, 492, 789
BstDSI CCRYGG 1 cut(s) 595
BstF5I GGATG 3 cut(s) 258, 403, 979
BstFNI CGCG 1 cut(s) 503
BstHHI GCGC 2 cut(s) 236, 505
BstKTI GATC 7 cut(s) 49, 53, 252, 464, 757, 775, 970
BstMBI GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
BstMWI GCNNNNNNNGC 9 cut(s) 197, 206, 231, 608, 617, 620, 649, 658, 815
BstNI CCWGG 2 cut(s) 457, 795
BstNSI RCATGY 2 cut(s) 521, 665
BstSCI CCNGG 2 cut(s) 455, 793
BstUI CGCG 1 cut(s) 503
BstV1I GCAGC 5 cut(s) 212, 347, 598, 607, 620
BstXI CCANNNNNNTGG 1 cut(s) 1168
Bsu15I ATCGAT 1 cut(s) 49
BsuRI GGCC 2 cut(s) 257, 1140
BsuTUI ATCGAT 1 cut(s) 49
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 500
BtsCI GGATG 3 cut(s) 258, 403, 979
Cac8I GCNNGC 5 cut(s) 189, 223, 238, 242, 333
CfoI GCGC 2 cut(s) 236, 505
Cfr13I GGNCC 2 cut(s) 471, 1013
ClaI ATCGAT 1 cut(s) 49
CseI GACGC 1 cut(s) 740
Csp6I GTAC 2 cut(s) 592, 1165
CviAII CATG 6 cut(s) 68, 269, 306, 518, 662, 1099
CviQI GTAC 2 cut(s) 592, 1165
DdeI CTNAG 3 cut(s) 183, 492, 789
DpnI GATC 7 cut(s) 48, 52, 251, 463, 756, 774, 969
DpnII GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Ecl136II GAGCTC 2 cut(s) 453, 643
Eco24I GRGCYC 2 cut(s) 455, 645
Eco47I GGWCC 2 cut(s) 471, 1013
Eco53kI GAGCTC 2 cut(s) 453, 643
Eco57I CTGAAG 1 cut(s) 1088
Eco72I CACGTG 1 cut(s) 562
EcoICRI GAGCTC 2 cut(s) 453, 643
EcoRII CCWGG 2 cut(s) 455, 793
EcoT22I ATGCAT 1 cut(s) 663
EcoT38I GRGCYC 2 cut(s) 455, 645
FaeI CATG 6 cut(s) 71, 272, 309, 521, 665, 1102
FaqI GGGAC 1 cut(s) 484
FatI CATG 6 cut(s) 67, 268, 305, 517, 661, 1098
FbaI TGATCA 2 cut(s) 754, 967
FblI GTMKAC 2 cut(s) 294, 1001
Fnu4HI GCNGC 5 cut(s) 201, 336, 609, 612, 621
FokI GGATG 3 cut(s) 245, 390, 966
FriOI GRGCYC 2 cut(s) 455, 645
Fsp4HI GCNGC 5 cut(s) 201, 336, 609, 612, 621
FspBI CTAG 3 cut(s) 237, 530, 615
GlaI GCGC 2 cut(s) 235, 504
GluI GCNGC 5 cut(s) 201, 336, 609, 612, 621
GsuI CTGGAG 2 cut(s) 266, 360
HaeIII GGCC 2 cut(s) 257, 1140
HapII CCGG 2 cut(s) 914, 1061
HgaI GACGC 1 cut(s) 740
HhaI GCGC 2 cut(s) 236, 505
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 6 cut(s) 71, 272, 309, 521, 665, 1102
Hin6I GCGC 2 cut(s) 234, 503
HinP1I GCGC 2 cut(s) 234, 503
HincII GTYRAC 1 cut(s) 1002
HindII GTYRAC 1 cut(s) 1002
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 6 cut(s) 342, 368, 581, 767, 899, 1025
HpaII CCGG 2 cut(s) 914, 1061
HphI GGTGA 5 cut(s) 24, 326, 764, 793, 936
Hpy166II GTNNAC 3 cut(s) 295, 592, 1002
Hpy188I TCNGA 7 cut(s) 46, 428, 493, 580, 766, 772, 1013
Hpy188III TCNNGA 3 cut(s) 95, 965, 1031
Hpy8I GTNNAC 3 cut(s) 295, 592, 1002
Hpy99I CGWCG 3 cut(s) 734, 1003, 1006
HpyAV CCTTC 4 cut(s) 152, 169, 792, 965
HpyCH4III ACNGT 5 cut(s) 137, 596, 940, 1006, 1039
HpyCH4IV ACGT 4 cut(s) 90, 150, 561, 1163
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 206, 231, 608, 617, 620, 649, 658, 815
HpyF3I CTNAG 3 cut(s) 183, 492, 789
HpySE526I ACGT 4 cut(s) 90, 150, 561, 1163
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 6 cut(s) 71, 272, 309, 521, 665, 1102
HspAI GCGC 2 cut(s) 234, 503
Ksp22I TGATCA 2 cut(s) 754, 967
Kzo9I GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
LmnI GCTCC 3 cut(s) 429, 458, 599
Lsp1109I GCAGC 5 cut(s) 212, 347, 598, 607, 620
MaeI CTAG 3 cut(s) 237, 530, 615
MaeII ACGT 4 cut(s) 90, 150, 561, 1163
MaeIII GTNAC 1 cut(s) 176
MalI GATC 7 cut(s) 48, 52, 251, 463, 756, 774, 969
MbiI CCGCTC 1 cut(s) 37
MboI GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
MboII GAAGA 2 cut(s) 859, 902
MfeI CAATTG 1 cut(s) 1179
MhlI GDGCHC 2 cut(s) 455, 645
MluCI AATT 4 cut(s) 429, 476, 1179, 1189
MlyI GAGTC 4 cut(s) 351, 362, 776, 908
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 9 cut(s) 247, 292, 487, 490, 516, 851, 959, 962, 1151
Mph1103I ATGCAT 1 cut(s) 663
MseI TTAA 7 cut(s) 326, 384, 738, 906, 1073, 1134, 1192
MslI CAYNNNNRTG 2 cut(s) 750, 1040
MspA1I CMGCKG 2 cut(s) 338, 611
MspI CCGG 2 cut(s) 914, 1061
MspR9I CCNGG 2 cut(s) 457, 795
MunI CAATTG 1 cut(s) 1179
Mva1269I GAATGC 2 cut(s) 191, 623
MvaI CCWGG 2 cut(s) 457, 795
MvnI CGCG 1 cut(s) 503
MwoI GCNNNNNNNGC 9 cut(s) 197, 206, 231, 608, 617, 620, 649, 658, 815
NdeII GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 6 cut(s) 71, 272, 309, 521, 665, 1102
NlaIV GGNNCC 3 cut(s) 134, 472, 1126
NsiI ATGCAT 1 cut(s) 663
NspI RCATGY 2 cut(s) 521, 665
NspV TTCGAA 1 cut(s) 569
OliI CACNNNNGTG 2 cut(s) 750, 1040
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PctI GAATGC 2 cut(s) 191, 623
PfeI GAWTC 2 cut(s) 581, 1025
PkrI GCNGC 5 cut(s) 202, 337, 610, 613, 622
PleI GAGTC 4 cut(s) 350, 362, 775, 907
PmaCI CACGTG 1 cut(s) 562
PmlI CACGTG 1 cut(s) 562
PpsI GAGTC 4 cut(s) 350, 362, 775, 907
Ppu21I YACGTR 2 cut(s) 562, 1164
Psp124BI GAGCTC 2 cut(s) 455, 645
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 2 cut(s) 455, 793
PspCI CACGTG 1 cut(s) 562
PspGI CCWGG 2 cut(s) 455, 793
PspN4I GGNNCC 3 cut(s) 134, 472, 1126
PspPI GGNCC 2 cut(s) 471, 1013
PvuII CAGCTG 2 cut(s) 338, 611
RsaI GTAC 2 cut(s) 593, 1166
RsaNI GTAC 2 cut(s) 592, 1165
RseI CAYNNNNRTG 2 cut(s) 750, 1040
SacI GAGCTC 2 cut(s) 455, 645
SalI GTCGAC 1 cut(s) 1000
SaqAI TTAA 7 cut(s) 326, 384, 738, 906, 1073, 1134, 1192
SatI GCNGC 5 cut(s) 201, 336, 609, 612, 621
Sau3AI GATC 7 cut(s) 46, 50, 249, 461, 754, 772, 967
Sau96I GGNCC 2 cut(s) 471, 1013
SchI GAGTC 4 cut(s) 351, 362, 776, 908
ScrFI CCNGG 2 cut(s) 457, 795
SduI GDGCHC 2 cut(s) 455, 645
SfuI TTCGAA 1 cut(s) 569
SgrDI CGTCGACG 1 cut(s) 1000
SinI GGWCC 2 cut(s) 471, 1013
SmiMI CAYNNNNRTG 2 cut(s) 750, 1040
SmlI CTYRAG 2 cut(s) 283, 585
SmoI CTYRAG 2 cut(s) 283, 585
Sse9I AATT 4 cut(s) 429, 476, 1179, 1189
SsiI CCGC 1 cut(s) 35
SspMI CTAG 3 cut(s) 237, 530, 615
SstI GAGCTC 2 cut(s) 455, 645
StyD4I CCNGG 2 cut(s) 455, 793
TaaI ACNGT 5 cut(s) 137, 596, 940, 1006, 1039
TaiI ACGT 4 cut(s) 93, 153, 564, 1166
TaqI TCGA 6 cut(s) 49, 96, 252, 569, 627, 1001
TasI AATT 4 cut(s) 429, 476, 1179, 1189
TfiI GAWTC 2 cut(s) 581, 1025
Tru1I TTAA 7 cut(s) 326, 384, 738, 906, 1073, 1134, 1192
Tru9I TTAA 7 cut(s) 326, 384, 738, 906, 1073, 1134, 1192
TseI GCWGC 5 cut(s) 200, 335, 608, 611, 620
TspDTI ATGAA 4 cut(s) 184, 543, 723, 1082
VpaK11BI GGWCC 2 cut(s) 471, 1013
XapI RAATTY 1 cut(s) 476
XceI RCATGY 2 cut(s) 521, 665
XmiI GTMKAC 2 cut(s) 294, 1001
XspI CTAG 3 cut(s) 237, 530, 615
Zsp2I ATGCAT 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.