Rh3CG326600

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000734
Physical Location & Seq
Reverse (-)
35606455 .. 35614151
7697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG326600.1

Sequence Viewer

Length: 471 bp
ATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATTTCCAATAATAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTAAGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGCATTCTTCTGGTCTTCTTCAAAAACTTGGTAGTGCAGCATCGTTCTCCAATTCTAAAAGGTCACTTGGGTCATGTGCTCAGCAAGACCTGTGGGAATTCAAACATCTGTTAATCCTAGCTTTTGATTTCCAACAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

157

Amino Acids

17.27

Weight (kDa)

6.51

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 12 - 113 9.1e-09 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AciI CCGC 1 cut(s) 29
AclWI GGATC 3 cut(s) 107, 144, 284
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 431
AfaI GTAC 1 cut(s) 142
AfeI AGCGCT 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 155, 356, 436
AjiI CACGTC 1 cut(s) 285
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 2 cut(s) 322, 455
AluI AGCT 2 cut(s) 322, 455
Alw21I GWGCWC 2 cut(s) 253, 415
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 3 cut(s) 107, 144, 284
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 431
AspLEI GCGC 2 cut(s) 132, 148
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 308
AvaII GGWCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 341
Bbv12I GWGCWC 2 cut(s) 253, 415
BbvI GCAGC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 149, 452
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 372
BlpI GCTNAGC 1 cut(s) 414
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 15, 216
Bme18I GGWCC 1 cut(s) 278
BmgBI CACGTC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 2 cut(s) 113, 121
BmrFI CCNGG 2 cut(s) 15, 216
BmsI GCATC 2 cut(s) 117, 383
BpiI GAAGAC 1 cut(s) 341
Bpu1102I GCTNAGC 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 115, 214
Bse1I ACTGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 115, 214
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 132
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 1 cut(s) 8
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 253, 415
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 3 cut(s) 15, 253, 415
Bsp143I GATC 3 cut(s) 99, 136, 289
Bsp1720I GCTNAGC 1 cut(s) 414
Bsp19I CCATGG 1 cut(s) 115
BspACI CCGC 1 cut(s) 29
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 427
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 113, 121
BspPI GGATC 3 cut(s) 107, 144, 284
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 115, 214
BssMI GATC 3 cut(s) 99, 136, 289
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 48, 253
BstDEI CTNAG 1 cut(s) 414
BstDSI CCRYGG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 314
BstFNI CGCG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 2 cut(s) 132, 148
BstKTI GATC 3 cut(s) 102, 139, 292
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 99, 136, 289
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 13, 214
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 341
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 115
BtrI CACGTC 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 48, 253
CfoI GCGC 2 cut(s) 132, 148
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 141
CspCI CAANNNNNGTGG 2 cut(s) 407, 442
CviAII CATG 3 cut(s) 116, 124, 408
CviJI RGCY 6 cut(s) 8, 13, 38, 120, 322, 455
CviKI_1 RGCY 6 cut(s) 8, 13, 38, 120, 322, 455
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 414
DpnI GATC 3 cut(s) 101, 138, 291
DpnII GATC 3 cut(s) 99, 136, 289
EaeI YGGCCR 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 314
EcoO65I GGTNACC 1 cut(s) 314
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 3 cut(s) 119, 127, 411
FaiI YATR 4 cut(s) 117, 125, 224, 409
FatI CATG 3 cut(s) 115, 123, 407
Fnu4HI GCNGC 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 2 cut(s) 149, 452
GlaI GCGC 2 cut(s) 131, 147
GluI GCNGC 1 cut(s) 372
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 15
HhaI GCGC 2 cut(s) 132, 148
Hin1II CATG 3 cut(s) 119, 127, 411
Hin6I GCGC 2 cut(s) 130, 146
HinP1I GCGC 2 cut(s) 130, 146
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 15
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 3 cut(s) 89, 171, 282
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 162, 177, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 414
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 3 cut(s) 119, 127, 411
HspAI GCGC 2 cut(s) 130, 146
Kzo9I GATC 3 cut(s) 99, 136, 289
LmnI GCTCC 2 cut(s) 125, 334
LpnPI CCDG 8 cut(s) 28, 82, 201, 228, 330, 332, 339, 437
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 2 cut(s) 117, 383
MaeI CTAG 2 cut(s) 149, 452
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 3 cut(s) 194, 314, 396
MalI GATC 3 cut(s) 101, 138, 291
MboI GATC 3 cut(s) 99, 136, 289
MboII GAAGA 4 cut(s) 220, 333, 341, 344
MhlI GDGCHC 3 cut(s) 15, 253, 415
MluCI AATT 3 cut(s) 329, 385, 431
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 3 cut(s) 71, 76, 304
Mph1103I ATGCAT 1 cut(s) 179
MseI TTAA 1 cut(s) 446
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 15, 216
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 115
NdeII GATC 3 cut(s) 99, 136, 289
NlaIII CATG 3 cut(s) 119, 127, 411
NlaIV GGNNCC 2 cut(s) 113, 121
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 3 cut(s) 194, 314, 396
NsiI ATGCAT 1 cut(s) 179
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 155
PflFI GACNNNGTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 214
PspEI GGTNACC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 113, 121
PspPI GGNCC 1 cut(s) 278
PsyI GACNNNGTC 1 cut(s) 302
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 3 cut(s) 99, 136, 289
Sau96I GGNCC 1 cut(s) 278
ScrFI CCNGG 2 cut(s) 15, 216
SduI GDGCHC 3 cut(s) 15, 253, 415
SetI ASST 8 cut(s) 87, 241, 287, 306, 324, 398, 426, 457
SfaNI GCATC 2 cut(s) 117, 383
SinI GGWCC 1 cut(s) 278
Sse9I AATT 3 cut(s) 329, 385, 431
SsiI CCGC 1 cut(s) 29
SspMI CTAG 2 cut(s) 149, 452
StyD4I CCNGG 2 cut(s) 13, 214
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 263
TaiI ACGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 266
TasI AATT 3 cut(s) 329, 385, 431
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseFI GTSAC 3 cut(s) 194, 314, 396
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 3 cut(s) 194, 314, 396
Tth111I GACNNNGTC 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XspI CTAG 2 cut(s) 149, 452
Zsp2I ATGCAT 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.