Rroxscaffold_6G00393560

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000734
Physical Location & Seq
Forward (+)
13720788 .. 13721345
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393560.1

Sequence Viewer

Length: 558 bp
ATGGATGGAAACAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATAAGCAATTACGGGCTGAGTACTCATGAATATTTCCTAGAGAAAATCATTTCGACTATCAAGAAACAGCAAAGTGAGGAAGCATTTTACGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACCTGGAAACGTAACCTTCCGATGGTCCAACCCTTCTACTCTGTTAAATGCAATCCCCACCCGGATCTCCTCGCCACCTTGGTTGCTCATGGCTCAAGTTTCGACTGTGCAAGTCGGTCTGAGATTGAATCCATTTTGGCTCTGGGAGTTTCTCCAGATCGCATTATCTATCCTAATCCTTGTAAAGCTTGCTCTCACATCAAGTATGTTGCCGCAGTTGGCGTTAACCTAACCACTTTTTATTCAGTAGATAAGGTTCATAAGATCCGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCGTCAAAGCTCCGGACGAGAGTGCATGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

185

Amino Acids

20.74

Weight (kDa)

7.63

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 53 - 171 4.7e-34 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccII CGCG 1 cut(s) 477
AccIII TCCGGA 1 cut(s) 487
AciI CCGC 2 cut(s) 387, 475
AclWI GGATC 2 cut(s) 246, 433
AcoI YGGCCR 1 cut(s) 513
AfaI GTAC 2 cut(s) 70, 531
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 20, 302
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 362, 485
AluI AGCT 2 cut(s) 362, 485
Alw21I GWGCWC 2 cut(s) 37, 539
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 2 cut(s) 246, 433
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 1 cut(s) 513
ApaLI GTGCAC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 199
AsuC2I CCSGG 2 cut(s) 236, 455
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 37, 539
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 2 cut(s) 236, 455
BfaI CTAG 1 cut(s) 86
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 3 cut(s) 178, 236, 455
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 1 cut(s) 199
BmrFI CCNGG 3 cut(s) 178, 236, 455
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 236, 455
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseAI TCCGGA 1 cut(s) 487
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 2 cut(s) 56, 285
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 515
BsiHKAI GWGCWC 2 cut(s) 37, 539
BsiSI CCGG 3 cut(s) 236, 455, 488
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 37, 539
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 3 cut(s) 238, 331, 438
BspACI CCGC 2 cut(s) 387, 475
BspANI GGCC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 57, 286
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 477
BspHI TCATGA 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 2 cut(s) 246, 433
BspQI GCTCTTC 1 cut(s) 544
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 238, 331, 438
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 2 cut(s) 281, 534
Bst6I CTCTTC 1 cut(s) 544
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 3 cut(s) 29, 65, 294
BstF5I GGATG 1 cut(s) 10
BstFNI CGCG 1 cut(s) 477
BstKTI GATC 3 cut(s) 241, 334, 441
BstMBI GATC 3 cut(s) 238, 331, 438
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 3 cut(s) 176, 234, 453
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 477
BstX2I RGATCY 2 cut(s) 238, 438
BstYI RGATCY 2 cut(s) 238, 438
BsuRI GGCC 1 cut(s) 515
BtsCI GGATG 1 cut(s) 10
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 364
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 199
CseI GACGC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 69, 530
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 4 cut(s) 74, 169, 263, 501
CviJI RGCY 6 cut(s) 64, 267, 314, 362, 485, 515
CviKI_1 RGCY 6 cut(s) 64, 267, 314, 362, 485, 515
CviQI GTAC 2 cut(s) 69, 530
DdeI CTNAG 3 cut(s) 29, 65, 294
DpnI GATC 3 cut(s) 240, 333, 440
DpnII GATC 3 cut(s) 238, 331, 438
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 544
EarI CTCTTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 176
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 4 cut(s) 77, 172, 266, 504
FaiI YATR 7 cut(s) 50, 75, 170, 264, 381, 435, 502
FatI CATG 4 cut(s) 73, 168, 262, 500
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 1 cut(s) 86
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 515
HapII CCGG 3 cut(s) 236, 455, 488
HgaI GACGC 1 cut(s) 466
Hin1II CATG 4 cut(s) 77, 172, 266, 504
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 1 cut(s) 302
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 3 cut(s) 236, 455, 488
Hpy166II GTNNAC 2 cut(s) 35, 400
Hpy188I TCNGA 3 cut(s) 195, 295, 443
Hpy188III TCNNGA 5 cut(s) 74, 109, 329, 488, 543
Hpy8I GTNNAC 2 cut(s) 35, 400
HpyAV CCTTC 2 cut(s) 200, 217
HpyCH4III ACNGT 2 cut(s) 281, 534
HpyCH4IV ACGT 2 cut(s) 138, 184
HpyCH4V TGCA 5 cut(s) 35, 225, 284, 451, 500
HpyF3I CTNAG 3 cut(s) 29, 65, 294
HpySE526I ACGT 2 cut(s) 138, 184
Hsp92II CATG 4 cut(s) 77, 172, 266, 504
Kpn2I TCCGGA 1 cut(s) 487
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 3 cut(s) 238, 331, 438
LguI GCTCTTC 1 cut(s) 544
LmnI GCTCC 2 cut(s) 490, 505
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 138, 184
MaeIII GTNAC 1 cut(s) 185
MalI GATC 3 cut(s) 240, 333, 440
MboI GATC 3 cut(s) 238, 331, 438
MboII GAAGA 2 cut(s) 531, 558
MflI RGATCY 2 cut(s) 238, 438
MhlI GDGCHC 2 cut(s) 37, 539
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 2 cut(s) 55, 446
MluNI TGGCCA 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 3 cut(s) 118, 176, 254
Mox20I TGGCCA 1 cut(s) 515
MroI TCCGGA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 515
MseI TTAA 3 cut(s) 162, 219, 399
Msp20I TGGCCA 1 cut(s) 515
MspI CCGG 3 cut(s) 236, 455, 488
MspR9I CCNGG 3 cut(s) 178, 236, 455
MvaI CCWGG 1 cut(s) 178
MvnI CGCG 1 cut(s) 477
NciI CCSGG 2 cut(s) 236, 455
NdeII GATC 3 cut(s) 238, 331, 438
NlaIII CATG 4 cut(s) 77, 172, 266, 504
PagI TCATGA 1 cut(s) 73
PaqCI CACCTGC 1 cut(s) 499
PciSI GCTCTTC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 388
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspPI GGNCC 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 414, 446
PsuI RGATCY 2 cut(s) 238, 438
RsaI GTAC 2 cut(s) 70, 531
RsaNI GTAC 2 cut(s) 69, 530
SapI GCTCTTC 1 cut(s) 544
SaqAI TTAA 3 cut(s) 162, 219, 399
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 3 cut(s) 238, 331, 438
Sau96I GGNCC 1 cut(s) 199
ScaI AGTACT 1 cut(s) 70
ScrFI CCNGG 3 cut(s) 178, 236, 455
SduI GDGCHC 2 cut(s) 37, 539
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 2 cut(s) 55, 446
SsiI CCGC 2 cut(s) 387, 475
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 3 cut(s) 176, 234, 453
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 281, 534
TaiI ACGT 2 cut(s) 141, 187
TaqI TCGA 2 cut(s) 101, 276
TaqII GACCGA 1 cut(s) 279
TasI AATT 2 cut(s) 55, 446
TatI WGTACW 1 cut(s) 68
TauI GCSGC 1 cut(s) 389
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 162, 219, 399
Tru9I TTAA 3 cut(s) 162, 219, 399
TspDTI ATGAA 2 cut(s) 90, 422
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.