Rorug04G0252500

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000734
Physical Location & Seq
Reverse (-)
42541519 .. 42542061
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0252500.1

Sequence Viewer

Length: 543 bp
ATGTCTGAGGATGTTGTTCAAATTGAAGACAAGCATTATTGTGTTGATGGTTATGGCGAACTTATGGCTTTTGACATTAATAACAATATAGAAAATATTGCACCACCAGAGGATGAATTGCTGATGAGAAGCTGCAAAGAGATATATCTCGTGGATTCGGTTGAGAAAGAATTATTGACGGTTCATAGGTACATTAGCTATAGAGAGTTGAAACATAAGACAAAGTTCTTCAAAATTTACAAATTGAATTTCGATGATGGTAAGTGGATCGAGAAAAAAACCCTAGGAGATGTAACTCTTTTCATCGGTGATAATTCCTCAATATCTGTGTTTGCTTCAAACTTTCCTGGATGCCGGCCGAATTGCATATACTTCAACCATGACAATGATCGTATAACCTCGGATAATATACCTTCTCATGACTATGGTGTCTACAATGTTGAAAGTGAAGATATTTCACAGCCTTACTGCCCTTACACCATAGATGCTAAGAAGCATCCTCCTATTTGGGTTGTACCGCCTTTTGAAGCAAGCCAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

180

Amino Acids

20.9

Weight (kDa)

4.83

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 3 - 146 7.7e-29 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 432
AciI CCGC 1 cut(s) 518
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 2 cut(s) 234, 247
AfaI GTAC 2 cut(s) 191, 516
AgsI TTSAA 9 cut(s) 20, 26, 211, 232, 247, 339, 376, 443, 527
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 132, 198
AluI AGCT 2 cut(s) 132, 198
AlwI GGATC 1 cut(s) 275
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 132
ApoI RAATTY 2 cut(s) 234, 247
AseI ATTAAT 1 cut(s) 78
AspA2I CCTAGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 320
AvrII CCTAGG 1 cut(s) 283
BauI CACGAG 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 119
BccI CCATC 2 cut(s) 41, 251
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 133
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 3 cut(s) 341, 475, 505
BpiI GAAGAC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 283, 399
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 1 cut(s) 535
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 283, 399
BseGI GGATG 4 cut(s) 16, 118, 356, 496
BseNI ACTGG 1 cut(s) 535
BseX3I CGGCCG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 1 cut(s) 355
BsnI GGCC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 267, 388
BspACI CCGC 1 cut(s) 518
BspANI GGCC 1 cut(s) 358
BspHI TCATGA 1 cut(s) 418
BspPI GGATC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 1 cut(s) 535
BssAI RCCGGY 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 283, 399
BssMI GATC 2 cut(s) 267, 388
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 181
BstC8I GCNNGC 2 cut(s) 356, 532
BstDEI CTNAG 2 cut(s) 6, 489
BstF5I GGATG 4 cut(s) 16, 118, 356, 496
BstKTI GATC 2 cut(s) 270, 391
BstMBI GATC 2 cut(s) 267, 388
BstMCI CGRYCG 1 cut(s) 359
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 356
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 4 cut(s) 16, 118, 356, 496
Cac8I GCNNGC 2 cut(s) 356, 532
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 354
Csp6I GTAC 2 cut(s) 190, 515
CviAII CATG 2 cut(s) 380, 419
CviJI RGCY 6 cut(s) 68, 132, 198, 358, 463, 534
CviKI_1 RGCY 6 cut(s) 68, 132, 198, 358, 463, 534
CviQI GTAC 2 cut(s) 190, 515
DdeI CTNAG 2 cut(s) 6, 489
DpnI GATC 2 cut(s) 269, 390
DpnII GATC 2 cut(s) 267, 388
DrdI GACNNNNNNGTC 1 cut(s) 428
DseDI GACNNNNNNGTC 1 cut(s) 428
EaeI YGGCCR 1 cut(s) 356
EagI CGGCCG 1 cut(s) 356
EclXI CGGCCG 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 283
Eco52I CGGCCG 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 2 cut(s) 383, 422
FatI CATG 2 cut(s) 379, 418
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 1 cut(s) 133
FokI GGATG 4 cut(s) 23, 125, 363, 483
Fsp4HI GCNGC 1 cut(s) 133
FspBI CTAG 1 cut(s) 284
GluI GCNGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 355
Hin1II CATG 2 cut(s) 383, 422
HinfI GANTC 1 cut(s) 155
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 2 cut(s) 7, 403
Hpy188III TCNNGA 2 cut(s) 271, 419
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 1 cut(s) 423
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 101, 135, 366
HpyF3I CTNAG 2 cut(s) 6, 489
Hsp92II CATG 2 cut(s) 383, 422
KroI GCCGGC 1 cut(s) 354
KroNI GCCGGC 1 cut(s) 356
Kzo9I GATC 2 cut(s) 267, 388
LpnPI CCDG 4 cut(s) 120, 333, 360, 368
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 3 cut(s) 341, 475, 505
MaeI CTAG 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 269, 390
MboI GATC 2 cut(s) 267, 388
MboII GAAGA 3 cut(s) 38, 220, 461
MluCI AATT 8 cut(s) 21, 116, 170, 234, 242, 247, 313, 361
MnlI CCTC 4 cut(s) 103, 328, 409, 510
MroNI GCCGGC 1 cut(s) 354
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 3 cut(s) 39, 384, 423
MspI CCGG 1 cut(s) 355
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
NaeI GCCGGC 1 cut(s) 356
NdeII GATC 2 cut(s) 267, 388
NgoMIV GCCGGC 1 cut(s) 354
NlaIII CATG 2 cut(s) 383, 422
PagI TCATGA 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 1 cut(s) 134
PshBI ATTAAT 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
RsaI GTAC 2 cut(s) 191, 516
RsaNI GTAC 2 cut(s) 190, 515
RseI CAYNNNNRTG 3 cut(s) 39, 384, 423
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 267, 388
ScrFI CCNGG 1 cut(s) 348
SetI ASST 5 cut(s) 134, 191, 200, 401, 415
SfaNI GCATC 3 cut(s) 341, 475, 505
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 3 cut(s) 39, 384, 423
Sse9I AATT 8 cut(s) 21, 116, 170, 234, 242, 247, 313, 361
SsiI CCGC 1 cut(s) 518
SspI AATATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 181
TaqI TCGA 2 cut(s) 252, 270
TasI AATT 8 cut(s) 21, 116, 170, 234, 242, 247, 313, 361
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseI GCWGC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 129, 173, 292
VspI ATTAAT 1 cut(s) 78
XapI RAATTY 2 cut(s) 234, 247
XmaJI CCTAGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.