RchiOBHm_Chr3g0490321

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000734
Physical Location & Seq
Reverse (-)
36996460 .. 36997032
573 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45349

Sequence Viewer

Length: 573 bp
ATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCCATGCATTGTGCTTTGTAGCTGCGGCAACAGCCGTGAAAACTGCCGTGGAAAAGTACTTTTCAAAAGTGGAGCGACAAAACTTAACGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCATCATAAGTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTACCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATTTCCAATAACAGTAGTGACGACAATGAGAAGAACCCAGGCATTATGGTAAGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCGACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATTCGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCGCAGCCAAGATCACCTACCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

190

Amino Acids

20.73

Weight (kDa)

7.66

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 4 - 54 2.9e-06 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 56 - 167 5.4e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 243
AccII CGCG 1 cut(s) 264
AciI CCGC 3 cut(s) 30, 68, 161
AclWI GGATC 3 cut(s) 239, 276, 416
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 3 cut(s) 101, 245, 274
AfeI AGCGCT 1 cut(s) 279
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 22, 108, 287
AjiI CACGTC 1 cut(s) 417
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 65, 454
AluI AGCT 2 cut(s) 65, 454
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 3 cut(s) 239, 276, 416
Aor51HI AGCGCT 1 cut(s) 279
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 65, 545
Asp718I GGTACC 1 cut(s) 243
AspLEI GCGC 3 cut(s) 264, 280, 545
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 3 cut(s) 440, 481, 547
AvaII GGWCC 1 cut(s) 410
BanI GGYRCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 52, 557
BccI CCATC 2 cut(s) 130, 194
BceAI ACGGC 3 cut(s) 62, 74, 183
BciT130I CCWGG 1 cut(s) 348
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 517
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 3 cut(s) 66, 69, 546
BlsI GCNGC 3 cut(s) 67, 70, 547
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 2 cut(s) 147, 348
Bme18I GGWCC 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 417
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 2 cut(s) 245, 253
BmrFI CCNGG 2 cut(s) 147, 348
BmsI GCATC 1 cut(s) 249
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 90, 247, 346
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 1 cut(s) 233
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 3 cut(s) 90, 247, 346
BseGI GGATG 1 cut(s) 512
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 52, 557
Bsh1236I CGCG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 147, 385
Bsp143I GATC 4 cut(s) 231, 268, 421, 552
Bsp19I CCATGG 1 cut(s) 247
BspACI CCGC 3 cut(s) 30, 68, 161
BspANI GGCC 1 cut(s) 140
BspFNI CGCG 1 cut(s) 264
BspLI GGNNCC 2 cut(s) 245, 253
BspPI GGATC 3 cut(s) 239, 276, 416
BspT107I GGYRCC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 90, 247, 346
BssMI GATC 4 cut(s) 231, 268, 421, 552
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 323, 395
BstC8I GCNNGC 2 cut(s) 180, 385
BstDSI CCRYGG 2 cut(s) 90, 247
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 1 cut(s) 512
BstFNI CGCG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 3 cut(s) 264, 280, 545
BstKTI GATC 4 cut(s) 234, 271, 424, 555
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 4 cut(s) 231, 268, 421, 552
BstMCI CGRYCG 1 cut(s) 151
BstMWI GCNNNNNNNGC 3 cut(s) 10, 74, 167
BstNI CCWGG 1 cut(s) 348
BstNSI RCATGY 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 2 cut(s) 145, 346
BstSFI CTRYAG 1 cut(s) 517
BstUI CGCG 1 cut(s) 264
BstV1I GCAGC 2 cut(s) 52, 557
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 2 cut(s) 90, 247
BtrI CACGTC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 180, 385
CfoI GCGC 3 cut(s) 264, 280, 545
Cfr13I GGNCC 1 cut(s) 410
Csp6I GTAC 3 cut(s) 100, 244, 273
CviAII CATG 5 cut(s) 10, 14, 47, 248, 256
CviQI GTAC 3 cut(s) 100, 244, 273
DpnI GATC 4 cut(s) 233, 270, 423, 554
DpnII GATC 4 cut(s) 231, 268, 421, 552
EaeI YGGCCR 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 279
Eco91I GGTNACC 1 cut(s) 446
EcoO65I GGTNACC 1 cut(s) 446
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 247
EcoT22I ATGCAT 3 cut(s) 15, 52, 311
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 5 cut(s) 13, 17, 50, 251, 259
FaiI YATR 8 cut(s) 11, 15, 48, 191, 249, 257, 356, 497
FaqI GGGAC 1 cut(s) 28
FatI CATG 5 cut(s) 9, 13, 46, 247, 255
Fnu4HI GCNGC 3 cut(s) 66, 69, 546
FokI GGATG 1 cut(s) 499
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 66, 69, 546
FspBI CTAG 1 cut(s) 281
GlaI GCGC 3 cut(s) 263, 279, 544
GluI GCNGC 3 cut(s) 66, 69, 546
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 147
HhaI GCGC 3 cut(s) 264, 280, 545
Hin1II CATG 5 cut(s) 13, 17, 50, 251, 259
Hin6I GCGC 3 cut(s) 262, 278, 543
HinP1I GCGC 3 cut(s) 262, 278, 543
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 147
HphI GGTGA 3 cut(s) 440, 481, 547
Hpy188I TCNGA 4 cut(s) 221, 303, 414, 492
Hpy99I CGWCG 1 cut(s) 418
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 323, 395
HpyCH4IV ACGT 1 cut(s) 416
HpyCH4V TGCA 4 cut(s) 13, 50, 294, 309
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 74, 167
HpySE526I ACGT 1 cut(s) 416
Hsp92II CATG 5 cut(s) 13, 17, 50, 251, 259
HspAI GCGC 3 cut(s) 262, 278, 543
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 4 cut(s) 231, 268, 421, 552
LmnI GCTCC 2 cut(s) 115, 257
LpnPI CCDG 8 cut(s) 160, 214, 333, 360, 464, 467, 471, 529
Lsp1109I GCAGC 2 cut(s) 52, 557
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 416
MaeIII GTNAC 2 cut(s) 326, 446
MalI GATC 4 cut(s) 233, 270, 423, 554
MboI GATC 4 cut(s) 231, 268, 421, 552
MboII GAAGA 1 cut(s) 352
MhlI GDGCHC 2 cut(s) 147, 385
MluCI AATT 2 cut(s) 461, 568
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 5 cut(s) 15, 203, 208, 436, 460
Mph1103I ATGCAT 3 cut(s) 15, 52, 311
MseI TTAA 3 cut(s) 128, 531, 571
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 147, 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 10, 74, 167
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 247
NdeII GATC 4 cut(s) 231, 268, 421, 552
NlaIII CATG 5 cut(s) 13, 17, 50, 251, 259
NlaIV GGNNCC 2 cut(s) 245, 253
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 326, 446
NsiI ATGCAT 3 cut(s) 15, 52, 311
NspI RCATGY 1 cut(s) 17
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 434
PkrI GCNGC 3 cut(s) 67, 70, 547
Psp6I CCWGG 1 cut(s) 346
PspEI GGTNACC 1 cut(s) 446
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 245, 253
PspPI GGNCC 1 cut(s) 410
PsyI GACNNNGTC 1 cut(s) 434
RsaI GTAC 3 cut(s) 101, 245, 274
RsaNI GTAC 3 cut(s) 100, 244, 273
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 3 cut(s) 128, 531, 571
SatI GCNGC 3 cut(s) 66, 69, 546
Sau3AI GATC 4 cut(s) 231, 268, 421, 552
Sau96I GGNCC 1 cut(s) 410
ScaI AGTACT 1 cut(s) 101
ScrFI CCNGG 2 cut(s) 147, 348
SduI GDGCHC 2 cut(s) 147, 385
SetI ASST 9 cut(s) 67, 219, 373, 419, 438, 456, 471, 560, 564
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 517
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 461, 568
SsiI CCGC 3 cut(s) 30, 68, 161
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 145, 346
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 323, 395
TaiI ACGT 1 cut(s) 419
TaqI TCGA 1 cut(s) 398
TasI AATT 2 cut(s) 461, 568
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 71
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 128, 531, 571
Tru9I TTAA 3 cut(s) 128, 531, 571
TseFI GTSAC 2 cut(s) 326, 446
TseI GCWGC 2 cut(s) 65, 545
Tsp45I GTSAC 2 cut(s) 326, 446
Tth111I GACNNNGTC 1 cut(s) 434
VpaK11BI GGWCC 1 cut(s) 410
XceI RCATGY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 3 cut(s) 15, 52, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.