Rmu_sc0004876.1_g000010

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004876.1
OG0000734
Physical Location & Seq
Reverse (-)
45933 .. 50085
4153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004876.1_g000010.1.cds

Sequence Viewer

Length: 1659 bp
atggaagctgtagtggaagtccagactagagatcatgctttactcgctaatggaggtttagttgatgacattaaacaagttgctgcaactatcccctctgttcacatatgccatgcaccacgttcttctaatatggtagcccataggcttgcagcgttaggttttgacgctatacaacatacaatccaccgccccctccctcagatctcctttgatctacttcaaccatggaggcgattgaagagttgttgcaactgtcagactcgatgcgctaaggccaggccatcctcgccgacgaagacgttgacgaaaactctaccgcctcctctcgccgctcctcaactttcctcaacgtcgtcgctctcggcaatgttcaccagcgtggagtcgtggaatgtaaagatccttgaagccctaccaagtgcaccagatcaggtcgtgaccaataacaggctgggtgatgatgaatatttcattcagaaaatcatttcgacgatcaagaaactgcagccaagtgaggaagcattttacgttctggatttgggtcttgtaagcaacctcatggacacatggaaacgtaaccttccaatggtccaatctttctacgccgtcaagtgcaacccacacccggatctcctcgccaccttggcggctcaaggttcaagtttcgactgtggaagtccgtctgagattgagtccattttagctcttggagtttctccggatcgcatcatctatgctaatccttgcaaagctagctctcacatccagtacgctgctgaagttggcgttaacgtaaccacttttgactcggtagatgagattgaaaagatccgaaaatggcacccgaaatgttctttactgatccgcatcaaagctcctgacgagagtggatgcagcttcccactgagttccaagttcggagctctccctgaagaagtgtctttgctcctccaagccgctcaaactgcaggactcagagtaactggggtttcatttcacataggcagtaagtcctacaattttcaagcatacaaaacagccatagaggcagctaagaaggttttccaggaggcggctaggctctgtatgcctcccatgcatgtgttggacattggcggtggcttcgtgtccgagccatcgttctttgaagctgcggcagcagtcgtgaaaacctctgtggagacctatttttcagaggaggagcgacgcagcttgaaggtgatagccgagccaggtcggttttttgcagagaccgctttcacgcttgtcaccaacatcatcgggaagcgtgtgagaggggcggtcagacaatactggatcaacgaagggttttttgggtccatgatgtgtgcggaccctaaaaccctacttgaatcctgcattgctctgaaatgcatgtacaataacagtgatggcatcgagaagaatccagtcttgatggtctgtggcaaagctactggctctgctcgcacttacagttcgactgtgtttggtccgacgtgtgattcggctgacaaggtgttggagggtgaccagttaccagaactggaggtgaataatttgctggtgtttcgcaacatgggtgcttatacgtcggcgtgtggcagccacttcaatggttttggctccgccaagatcacccatcttactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

552

Amino Acids

60.16

Weight (kDa)

7.16

Isoelectric Point (pI)

49.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 843
AccBSI CCGCTC 2 cut(s) 335, 962
AccIII TCCGGA 1 cut(s) 721
AclWI GGATC 6 cut(s) 397, 639, 732, 826, 859, 1328
AcuI CTGAAG 2 cut(s) 801, 954
AfaI GTAC 2 cut(s) 773, 1403
AfiI CCNNNNNNNGG 4 cut(s) 450, 589, 628, 1075
AflIII ACRYGT 1 cut(s) 1502
AjiI CACGTC 1 cut(s) 1503
AjnI CCWGG 3 cut(s) 278, 1068, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 1320, 1352
AleI CACNNNNGTG 1 cut(s) 380
Alw21I GWGCWC 2 cut(s) 427, 928
Alw26I GTCTC 2 cut(s) 1178, 1247
Alw44I GTGCAC 1 cut(s) 423
AlwI GGATC 6 cut(s) 397, 639, 732, 826, 859, 1328
Aor13HI TCCGGA 1 cut(s) 721
AoxI GGCC 2 cut(s) 276, 281
ApaLI GTGCAC 1 cut(s) 423
ArsI GACNNNNNNTTYG 2 cut(s) 1492, 1524
Asp700I GAANNNNTTC 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 4 cut(s) 592, 1341, 1357, 1496
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 7 cut(s) 367, 470, 1234, 1264, 1544, 1567, 1633
AsuNHI GCTAGC 1 cut(s) 755
AvaII GGWCC 4 cut(s) 592, 1341, 1357, 1496
BaeGI GKGCMC 1 cut(s) 427
BanI GGYRCC 1 cut(s) 843
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 2 cut(s) 427, 928
BccI CCATC 5 cut(s) 292, 1147, 1409, 1435, 1653
BceAI ACGGC 1 cut(s) 593
BciT130I CCWGG 3 cut(s) 280, 1070, 1236
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 2 cut(s) 1178, 1247
BfaI CTAG 3 cut(s) 27, 756, 1080
BfmI CTRYAG 3 cut(s) 9, 506, 969
BglI GCCNNNNNGGC 2 cut(s) 647, 1049
BglII AGATCT 1 cut(s) 204
Bme1390I CCNGG 4 cut(s) 280, 629, 1070, 1236
Bme18I GGWCC 4 cut(s) 592, 1341, 1357, 1496
BmgBI CACGTC 1 cut(s) 1503
BmgT120I GGNCC 4 cut(s) 592, 1341, 1357, 1496
BmiI GGNNCC 4 cut(s) 845, 1342, 1359, 1630
BmrFI CCNGG 4 cut(s) 280, 629, 1070, 1236
BmrI ACTGGG 1 cut(s) 996
BmsI GCATC 5 cut(s) 257, 738, 879, 884, 1428
BmtI GCTAGC 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 996
BpiI GAAGAC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 1571
Bpu10I CCTNAGC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 1 cut(s) 629
BsaBI GATNNNNATC 1 cut(s) 869
BsaI GGTCTC 2 cut(s) 1178, 1247
BsaJI CCNNGG 2 cut(s) 227, 645
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bsc4I CCNNNNNNNGG 4 cut(s) 450, 589, 628, 1075
Bse1I ACTGG 7 cut(s) 769, 991, 1322, 1433, 1465, 1537, 1554
Bse3DI GCAATG 2 cut(s) 375, 1383
Bse8I GATNNNNATC 1 cut(s) 869
BseAI TCCGGA 1 cut(s) 721
BseBI CCWGG 3 cut(s) 280, 1070, 1236
BseDI CCNNGG 2 cut(s) 227, 645
BseGI GGATG 3 cut(s) 284, 765, 899
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 4 cut(s) 450, 589, 628, 1075
BseMI GCAATG 2 cut(s) 375, 1383
BseMII CTCAG 4 cut(s) 215, 678, 899, 991
BseNI ACTGG 7 cut(s) 769, 991, 1322, 1433, 1465, 1537, 1554
BseRI GAGGAG 6 cut(s) 315, 327, 626, 941, 1214, 1217
BseSI GKGCMC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 454
BshFI GGCC 2 cut(s) 278, 283
BshNI GGYRCC 1 cut(s) 843
BsiHKAI GWGCWC 2 cut(s) 427, 928
BsiSI CCGG 2 cut(s) 629, 722
BslI CCNNNNNNNGG 4 cut(s) 450, 589, 628, 1075
BsmAI GTCTC 2 cut(s) 1178, 1247
BsnI GGCC 2 cut(s) 278, 283
Bso31I GGTCTC 2 cut(s) 1178, 1247
Bsp1286I GDGCHC 2 cut(s) 427, 928
Bsp13I TCCGGA 1 cut(s) 721
Bsp1407I TGTACA 1 cut(s) 1401
Bsp19I CCATGG 1 cut(s) 227
BspANI GGCC 2 cut(s) 278, 283
BspCNI CTCAG 4 cut(s) 214, 679, 900, 990
BspEI TCCGGA 1 cut(s) 721
BspLI GGNNCC 4 cut(s) 845, 1342, 1359, 1630
BspMAI CTGCAG 2 cut(s) 510, 973
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 6 cut(s) 397, 639, 732, 826, 859, 1328
BspT107I GGYRCC 1 cut(s) 843
BspTNI GGTCTC 2 cut(s) 1178, 1247
BsrBI CCGCTC 2 cut(s) 335, 962
BsrDI GCAATG 2 cut(s) 375, 1383
BsrGI TGTACA 1 cut(s) 1401
BsrI ACTGG 7 cut(s) 769, 991, 1322, 1433, 1465, 1537, 1554
BssECI CCNNGG 2 cut(s) 227, 645
BssT1I CCWWGG 2 cut(s) 227, 645
Bst2UI CCWGG 3 cut(s) 280, 1070, 1236
Bst4CI ACNGT 5 cut(s) 257, 674, 1412, 1481, 1489
Bst6I CTCTTC 1 cut(s) 236
BstAUI TGTACA 1 cut(s) 1401
BstC8I GCNNGC 3 cut(s) 150, 757, 1471
BstDEI CTNAG 6 cut(s) 201, 273, 687, 908, 977, 1056
BstDSI CCRYGG 1 cut(s) 227
BstEII GGTNACC 1 cut(s) 1532
BstF5I GGATG 3 cut(s) 284, 765, 899
BstHHI GCGC 1 cut(s) 272
BstMAI GTCTC 2 cut(s) 1178, 1247
BstNI CCWGG 3 cut(s) 280, 1070, 1236
BstNSI RCATGY 2 cut(s) 1106, 1402
BstPI GGTNACC 1 cut(s) 1532
BstSCI CCNGG 4 cut(s) 278, 627, 1068, 1234
BstSFI CTRYAG 3 cut(s) 9, 506, 969
BstSLI GKGCMC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 4 cut(s) 204, 402, 631, 831
BstXI CCANNNNNNTGG 1 cut(s) 1619
BstYI RGATCY 4 cut(s) 204, 402, 631, 831
BsuRI GGCC 2 cut(s) 278, 283
BtgI CCRYGG 1 cut(s) 227
BtrI CACGTC 1 cut(s) 1503
BtsCI GGATG 3 cut(s) 284, 765, 899
BtsIMutI CAGTG 2 cut(s) 905, 1417
Cac8I GCNNGC 3 cut(s) 150, 757, 1471
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 4 cut(s) 592, 1341, 1357, 1496
CseI GACGC 2 cut(s) 176, 1218
Csp6I GTAC 2 cut(s) 772, 1402
CviQI GTAC 2 cut(s) 772, 1402
DdeI CTNAG 6 cut(s) 201, 273, 687, 908, 977, 1056
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 1 cut(s) 1621
Ecl136II GAGCTC 1 cut(s) 926
Eco130I CCWWGG 2 cut(s) 227, 645
Eco24I GRGCYC 1 cut(s) 928
Eco31I GGTCTC 2 cut(s) 1178, 1247
Eco47I GGWCC 4 cut(s) 592, 1341, 1357, 1496
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 801, 954
Eco91I GGTNACC 1 cut(s) 1532
EcoICRI GAGCTC 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 1532
EcoRII CCWGG 3 cut(s) 278, 1068, 1234
EcoT14I CCWWGG 2 cut(s) 227, 645
EcoT22I ATGCAT 2 cut(s) 1104, 1400
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 227, 645
FauNDI CATATG 1 cut(s) 107
FokI GGATG 3 cut(s) 271, 752, 906
FriOI GRGCYC 1 cut(s) 928
FspBI CTAG 3 cut(s) 27, 756, 1080
GlaI GCGC 1 cut(s) 271
GsaI CCCAGC 1 cut(s) 458
GsuI CTGGAG 1 cut(s) 1571
HaeIII GGCC 2 cut(s) 278, 283
HapII CCGG 2 cut(s) 629, 722
HgaI GACGC 2 cut(s) 176, 1218
HhaI GCGC 1 cut(s) 272
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 2 cut(s) 306, 793
HindII GTYRAC 2 cut(s) 306, 793
HinfI GANTC 8 cut(s) 262, 386, 695, 809, 975, 1376, 1429, 1508
HpaI GTTAAC 1 cut(s) 793
HpaII CCGG 2 cut(s) 629, 722
HphI GGTGA 7 cut(s) 367, 470, 1234, 1264, 1544, 1567, 1633
Hpy166II GTNNAC 5 cut(s) 103, 306, 375, 425, 793
Hpy8I GTNNAC 5 cut(s) 103, 306, 375, 425, 793
Hpy99I CGWCG 7 cut(s) 298, 358, 361, 496, 1212, 1504, 1600
HpyAV CCTTC 4 cut(s) 593, 1054, 1213, 1322
HpyCH4III ACNGT 5 cut(s) 257, 674, 1412, 1481, 1489
HpyCH4IV ACGT 8 cut(s) 121, 302, 353, 531, 577, 795, 1502, 1595
HpyF3I CTNAG 6 cut(s) 201, 273, 687, 908, 977, 1056
HpySE526I ACGT 8 cut(s) 121, 302, 353, 531, 577, 795, 1502, 1595
HspAI GCGC 1 cut(s) 270
Kpn2I TCCGGA 1 cut(s) 721
KspAI GTTAAC 1 cut(s) 793
LmnI GCTCC 6 cut(s) 340, 883, 923, 954, 1204, 1634
LweI GCATC 5 cut(s) 257, 738, 879, 884, 1428
MaeI CTAG 3 cut(s) 27, 756, 1080
MaeII ACGT 8 cut(s) 121, 302, 353, 531, 577, 795, 1502, 1595
MaeIII GTNAC 7 cut(s) 439, 578, 796, 982, 1270, 1532, 1539
MbiI CCGCTC 2 cut(s) 335, 962
MboII GAAGA 5 cut(s) 117, 253, 310, 947, 1438
MflI RGATCY 4 cut(s) 204, 402, 631, 831
MhlI GDGCHC 2 cut(s) 427, 928
MluCI AATT 3 cut(s) 1021, 1561, 1654
MlyI GAGTC 5 cut(s) 256, 395, 704, 803, 969
MmeI TCCRAC 3 cut(s) 1089, 1506, 1523
Mph1103I ATGCAT 2 cut(s) 1104, 1400
MroI TCCGGA 1 cut(s) 721
MroXI GAANNNNTTC 1 cut(s) 1064
MseI TTAA 3 cut(s) 72, 792, 1657
MslI CAYNNNNRTG 3 cut(s) 380, 1103, 1617
MspI CCGG 2 cut(s) 629, 722
MspR9I CCNGG 4 cut(s) 280, 629, 1070, 1236
MvaI CCWGG 3 cut(s) 280, 1070, 1236
NciI CCSGG 1 cut(s) 629
NcoI CCATGG 1 cut(s) 227
NdeI CATATG 1 cut(s) 107
NheI GCTAGC 1 cut(s) 755
NlaIV GGNNCC 4 cut(s) 845, 1342, 1359, 1630
NmeAIII GCCGAG 2 cut(s) 344, 1255
NmuCI GTSAC 3 cut(s) 439, 1270, 1532
NsiI ATGCAT 2 cut(s) 1104, 1400
NspI RCATGY 2 cut(s) 1106, 1402
OliI CACNNNNGTG 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 1064
PfeI GAWTC 3 cut(s) 1376, 1429, 1508
PfoI TCCNGGA 1 cut(s) 1068
PleI GAGTC 5 cut(s) 256, 394, 703, 803, 969
PpsI GAGTC 5 cut(s) 256, 394, 703, 803, 969
Psp124BI GAGCTC 1 cut(s) 928
Psp6I CCWGG 3 cut(s) 278, 1068, 1234
PspEI GGTNACC 1 cut(s) 1532
PspFI CCCAGC 1 cut(s) 454
PspGI CCWGG 3 cut(s) 278, 1068, 1234
PspN4I GGNNCC 4 cut(s) 845, 1342, 1359, 1630
PspPI GGNCC 4 cut(s) 592, 1341, 1357, 1496
PstI CTGCAG 2 cut(s) 510, 973
PsuI RGATCY 4 cut(s) 204, 402, 631, 831
RsaI GTAC 2 cut(s) 773, 1403
RsaNI GTAC 2 cut(s) 772, 1402
RseI CAYNNNNRTG 3 cut(s) 380, 1103, 1617
SacI GAGCTC 1 cut(s) 928
SaqAI TTAA 3 cut(s) 72, 792, 1657
Sau96I GGNCC 4 cut(s) 592, 1341, 1357, 1496
SchI GAGTC 5 cut(s) 256, 395, 704, 803, 969
ScrFI CCNGG 4 cut(s) 280, 629, 1070, 1236
SduI GDGCHC 2 cut(s) 427, 928
SfaNI GCATC 5 cut(s) 257, 738, 879, 884, 1428
SfcI CTRYAG 3 cut(s) 9, 506, 969
SinI GGWCC 4 cut(s) 592, 1341, 1357, 1496
SmiMI CAYNNNNRTG 3 cut(s) 380, 1103, 1617
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
Sse9I AATT 3 cut(s) 1021, 1561, 1654
SspI AATATT 1 cut(s) 470
SspMI CTAG 3 cut(s) 27, 756, 1080
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 4 cut(s) 278, 627, 1068, 1234
StyI CCWWGG 2 cut(s) 227, 645
TaaI ACNGT 5 cut(s) 257, 674, 1412, 1481, 1489
TaiI ACGT 8 cut(s) 124, 305, 356, 534, 580, 798, 1505, 1598
TaqI TCGA 5 cut(s) 265, 491, 669, 1422, 1484
TasI AATT 3 cut(s) 1021, 1561, 1654
TatI WGTACW 1 cut(s) 1401
TauI GCSGC 5 cut(s) 335, 653, 962, 1079, 1160
TfiI GAWTC 3 cut(s) 1376, 1429, 1508
Tru1I TTAA 3 cut(s) 72, 792, 1657
Tru9I TTAA 3 cut(s) 72, 792, 1657
TscAI CASTG 2 cut(s) 912, 1417
TseFI GTSAC 3 cut(s) 439, 1270, 1532
Tsp45I GTSAC 3 cut(s) 439, 1270, 1532
TspDTI ATGAA 3 cut(s) 463, 480, 984
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 2 cut(s) 912, 1417
VneI GTGCAC 1 cut(s) 423
VpaK11BI GGWCC 4 cut(s) 592, 1341, 1357, 1496
XceI RCATGY 2 cut(s) 1106, 1402
XcmI CCANNNNNNNNNTGG 2 cut(s) 451, 1105
XmnI GAANNNNTTC 1 cut(s) 1064
XspI CTAG 3 cut(s) 27, 756, 1080
Zsp2I ATGCAT 2 cut(s) 1104, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.