Rh3AG270800

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000734
Physical Location & Seq
Forward (+)
30865259 .. 30867205
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG270800.1

Sequence Viewer

Length: 1098 bp
ATGGACACATGGAAACGTAACCTTCCAATGGTCCAATCTTTCTACGCCGTCAAGTGCAACCCACACCCGGATCTTCTCGCCACCTTGGCGGCTCAAGGTTCAAGTTTCGACTGTGGAAGTCCGTCTGAGATTGAGTCCATTTTAGCACTTGGAGTTTCTCCGGATCGCATCATCTATGCTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTTAACGTAACCACTTTTGACTCGGTAGATGAGATTGAAAAGATCCGAAAATGGCACCCGAAATGTTCTTTACTGATCCGGATCAAAGCTCCTGACGAGAGTGGATGCAGCTTCCCACTGAGTTCCAAGTTCGGAGCTCTCCCTGAAGAAGTGTCTTTGCTCCTCCAAGGCGCTCAAACTGCAGGACTCAGAGTAGCTGGGGTTTCATTTCACATAGGAAGTAAGTCCTACAATTTTCAAGCATACAAAACAGCCATAGAGGCAGCTAAGGAGGTTTTCCAGGAGGCGGCTAGGCTCTGTATGCCTCCCATGCATGTGTTGGACATTGGCGGTGGCTTCGTGTCCGAGCCATCGTTCTTTGAAGCTGCGGCAGCAGTCGTGAAAACCTCTGTGGAGACCTATTTTTCAGCGGAGGAGCGACGCAGCTTGAAGGTGATAGCCGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGAGGTCAGACAATACTGGATCAACGAAGGGTTTTTTGGGTCCATGATGTGTGCGGACCCTAAAACCCTACTTGAATCCTGCATTGCTCTGAAATGCATGTACAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTCTGTGGCAAAGCTACTGGCTGTGCTCGCACTTACAGTTCGACTGTGTTTGGTCCGACGTGTGATTCGGCTGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCTCAACATGGGTGCTTATACGTCGGCGTGTGGCAGCCACTTCAATGGTTTTGGCTCCGCCAAGATCACCCATCTTACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

365

Amino Acids

39.61

Weight (kDa)

6.02

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 2 - 230 1.6e-67 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 197 - 342 7e-13 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccIII TCCGGA 2 cut(s) 160, 306
AciI CCGC 8 cut(s) 89, 515, 558, 596, 638, 696, 794, 1071
AclWI GGATC 6 cut(s) 78, 171, 265, 298, 317, 767
AcuI CTGAAG 2 cut(s) 240, 393
AfaI GTAC 2 cut(s) 212, 842
AfiI CCNNNNNNNGG 3 cut(s) 28, 67, 514
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 7 cut(s) 102, 266, 467, 590, 658, 815, 1057
AjiI CACGTC 1 cut(s) 942
AjnI CCWGG 2 cut(s) 507, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
Alw21I GWGCWC 2 cut(s) 367, 910
Alw26I GTCTC 2 cut(s) 617, 686
AlwI GGATC 6 cut(s) 78, 171, 265, 298, 317, 767
Aor13HI TCCGGA 2 cut(s) 160, 306
ApeKI GCWGC 7 cut(s) 215, 336, 491, 593, 599, 651, 1047
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 4 cut(s) 31, 780, 796, 935
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 5 cut(s) 673, 703, 983, 1006, 1072
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 4 cut(s) 31, 780, 796, 935
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 2 cut(s) 367, 910
BbvI GCAGC 7 cut(s) 202, 348, 503, 580, 611, 663, 1059
BccI CCATC 4 cut(s) 586, 848, 874, 1092
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 509, 675
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 617, 686
BfaI CTAG 2 cut(s) 195, 519
BfmI CTRYAG 1 cut(s) 408
BfoI RGCGCY 1 cut(s) 402
BglI GCCNNNNNGGC 2 cut(s) 86, 488
Bme1390I CCNGG 3 cut(s) 68, 509, 675
Bme18I GGWCC 4 cut(s) 31, 780, 796, 935
BmgBI CACGTC 1 cut(s) 942
BmgT120I GGNCC 4 cut(s) 31, 780, 796, 935
BmiI GGNNCC 4 cut(s) 284, 781, 798, 1069
BmrFI CCNGG 3 cut(s) 68, 509, 675
BmsI GCATC 3 cut(s) 177, 323, 867
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 1010
Bpu10I CCTNAGC 1 cut(s) 495
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 617, 686
BsaJI CCNNGG 2 cut(s) 84, 394
BsaWI WCCGGW 2 cut(s) 160, 306
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 67, 514
Bse1I ACTGG 5 cut(s) 761, 872, 904, 976, 993
Bse3DI GCAATG 1 cut(s) 822
Bse8I GATNNNNATC 1 cut(s) 308
BseAI TCCGGA 2 cut(s) 160, 306
BseBI CCWGG 2 cut(s) 509, 675
BseDI CCNNGG 2 cut(s) 84, 394
BseGI GGATG 1 cut(s) 338
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 3 cut(s) 28, 67, 514
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 3 cut(s) 117, 338, 430
BseNI ACTGG 5 cut(s) 761, 872, 904, 976, 993
BseRI GAGGAG 2 cut(s) 380, 656
BseXI GCAGC 7 cut(s) 202, 348, 503, 580, 611, 663, 1059
BseYI CCCAGC 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 367, 910
BsiSI CCGG 3 cut(s) 68, 161, 307
BslI CCNNNNNNNGG 3 cut(s) 28, 67, 514
BsmAI GTCTC 2 cut(s) 617, 686
Bso31I GGTCTC 2 cut(s) 617, 686
Bsp1286I GDGCHC 2 cut(s) 367, 910
Bsp13I TCCGGA 2 cut(s) 160, 306
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
BspACI CCGC 8 cut(s) 89, 515, 558, 596, 638, 696, 794, 1071
BspCNI CTCAG 3 cut(s) 118, 339, 429
BspEI TCCGGA 2 cut(s) 160, 306
BspLI GGNNCC 4 cut(s) 284, 781, 798, 1069
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 6 cut(s) 78, 171, 265, 298, 317, 767
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 2 cut(s) 617, 686
BsrDI GCAATG 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 5 cut(s) 761, 872, 904, 976, 993
BssECI CCNNGG 2 cut(s) 84, 394
BssMI GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
BssT1I CCWWGG 2 cut(s) 84, 394
Bst2UI CCWGG 2 cut(s) 509, 675
Bst4CI ACNGT 4 cut(s) 113, 851, 920, 928
BstAUI TGTACA 1 cut(s) 840
BstC8I GCNNGC 2 cut(s) 196, 910
BstDEI CTNAG 4 cut(s) 126, 347, 416, 495
BstEII GGTNACC 1 cut(s) 971
BstF5I GGATG 1 cut(s) 338
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 7 cut(s) 73, 166, 273, 306, 312, 762, 1080
BstMAI GTCTC 2 cut(s) 617, 686
BstMBI GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
BstMWI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
BstNI CCWGG 2 cut(s) 509, 675
BstNSI RCATGY 2 cut(s) 545, 841
BstPI GGTNACC 1 cut(s) 971
BstSCI CCNGG 3 cut(s) 66, 507, 673
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 7 cut(s) 202, 348, 503, 580, 611, 663, 1059
BstX2I RGATCY 2 cut(s) 70, 270
BstXI CCANNNNNNTGG 1 cut(s) 1058
BstYI RGATCY 2 cut(s) 70, 270
BtrI CACGTC 1 cut(s) 942
BtsCI GGATG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 344, 856
Cac8I GCNNGC 2 cut(s) 196, 910
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 4 cut(s) 31, 780, 796, 935
CseI GACGC 1 cut(s) 657
Csp6I GTAC 2 cut(s) 211, 841
CviAII CATG 6 cut(s) 9, 538, 542, 784, 838, 1021
CviQI GTAC 2 cut(s) 211, 841
DdeI CTNAG 4 cut(s) 126, 347, 416, 495
DpnI GATC 7 cut(s) 72, 165, 272, 305, 311, 761, 1079
DpnII GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
EciI GGCGGA 1 cut(s) 1060
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 84, 394
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 2 cut(s) 617, 686
Eco47I GGWCC 4 cut(s) 31, 780, 796, 935
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 240, 393
Eco91I GGTNACC 1 cut(s) 971
EcoICRI GAGCTC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 507, 673
EcoT14I CCWWGG 2 cut(s) 84, 394
EcoT22I ATGCAT 2 cut(s) 543, 839
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 2 cut(s) 84, 394
FaeI CATG 6 cut(s) 12, 541, 545, 787, 841, 1024
FatI CATG 6 cut(s) 8, 537, 541, 783, 837, 1020
FokI GGATG 1 cut(s) 345
FriOI GRGCYC 1 cut(s) 367
FspBI CTAG 2 cut(s) 195, 519
GlaI GCGC 1 cut(s) 400
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 1 cut(s) 1010
HaeII RGCGCY 1 cut(s) 402
HapII CCGG 3 cut(s) 68, 161, 307
HgaI GACGC 1 cut(s) 657
HhaI GCGC 1 cut(s) 401
Hin1II CATG 6 cut(s) 12, 541, 545, 787, 841, 1024
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 6 cut(s) 134, 248, 414, 815, 868, 947
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 3 cut(s) 68, 161, 307
HphI GGTGA 5 cut(s) 673, 703, 983, 1006, 1072
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 8 cut(s) 127, 275, 362, 419, 574, 749, 831, 939
Hpy188III TCNNGA 7 cut(s) 161, 307, 320, 607, 724, 862, 877
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 3 cut(s) 651, 943, 1039
HpyAV CCTTC 3 cut(s) 32, 652, 761
HpyCH4III ACNGT 4 cut(s) 113, 851, 920, 928
HpyCH4IV ACGT 4 cut(s) 16, 234, 941, 1034
HpyCH4V TGCA 8 cut(s) 57, 189, 336, 410, 541, 689, 822, 837
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
HpyF3I CTNAG 4 cut(s) 126, 347, 416, 495
HpySE526I ACGT 4 cut(s) 16, 234, 941, 1034
Hsp92II CATG 6 cut(s) 12, 541, 545, 787, 841, 1024
HspAI GCGC 1 cut(s) 399
Kpn2I TCCGGA 2 cut(s) 160, 306
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
LmnI GCTCC 5 cut(s) 322, 362, 393, 643, 1073
Lsp1109I GCAGC 7 cut(s) 202, 348, 503, 580, 611, 663, 1059
LweI GCATC 3 cut(s) 177, 323, 867
MaeI CTAG 2 cut(s) 195, 519
MaeII ACGT 4 cut(s) 16, 234, 941, 1034
MaeIII GTNAC 5 cut(s) 17, 235, 709, 971, 978
MalI GATC 7 cut(s) 72, 165, 272, 305, 311, 761, 1079
MboI GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
MboII GAAGA 3 cut(s) 65, 386, 877
MflI RGATCY 2 cut(s) 70, 270
MhlI GDGCHC 2 cut(s) 367, 910
MluCI AATT 3 cut(s) 460, 1000, 1093
MlyI GAGTC 3 cut(s) 143, 242, 408
MmeI TCCRAC 3 cut(s) 528, 945, 962
Mph1103I ATGCAT 2 cut(s) 543, 839
MroI TCCGGA 2 cut(s) 160, 306
MseI TTAA 2 cut(s) 231, 1096
MslI CAYNNNNRTG 2 cut(s) 542, 1056
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 3 cut(s) 68, 161, 307
MspR9I CCNGG 3 cut(s) 68, 509, 675
MvaI CCWGG 2 cut(s) 509, 675
MwoI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
NciI CCSGG 1 cut(s) 68
NdeII GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 6 cut(s) 12, 541, 545, 787, 841, 1024
NlaIV GGNNCC 4 cut(s) 284, 781, 798, 1069
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 2 cut(s) 709, 971
NsiI ATGCAT 2 cut(s) 543, 839
NspI RCATGY 2 cut(s) 545, 841
PfeI GAWTC 3 cut(s) 815, 868, 947
PfoI TCCNGGA 1 cut(s) 507
PleI GAGTC 3 cut(s) 142, 242, 408
PpsI GAGTC 3 cut(s) 142, 242, 408
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 507, 673
PspEI GGTNACC 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 2 cut(s) 507, 673
PspN4I GGNNCC 4 cut(s) 284, 781, 798, 1069
PspPI GGNCC 4 cut(s) 31, 780, 796, 935
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 2 cut(s) 70, 270
RsaI GTAC 2 cut(s) 212, 842
RsaNI GTAC 2 cut(s) 211, 841
RseI CAYNNNNRTG 2 cut(s) 542, 1056
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 2 cut(s) 231, 1096
Sau3AI GATC 7 cut(s) 70, 163, 270, 303, 309, 759, 1077
Sau96I GGNCC 4 cut(s) 31, 780, 796, 935
SchI GAGTC 3 cut(s) 143, 242, 408
ScrFI CCNGG 3 cut(s) 68, 509, 675
SduI GDGCHC 2 cut(s) 367, 910
SfaNI GCATC 3 cut(s) 177, 323, 867
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 4 cut(s) 31, 780, 796, 935
SmiMI CAYNNNNRTG 2 cut(s) 542, 1056
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 3 cut(s) 460, 1000, 1093
SsiI CCGC 8 cut(s) 89, 515, 558, 596, 638, 696, 794, 1071
SspMI CTAG 2 cut(s) 195, 519
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 66, 507, 673
StyI CCWWGG 2 cut(s) 84, 394
TaaI ACNGT 4 cut(s) 113, 851, 920, 928
TaiI ACGT 4 cut(s) 19, 237, 944, 1037
TaqI TCGA 3 cut(s) 108, 861, 923
TasI AATT 3 cut(s) 460, 1000, 1093
TatI WGTACW 1 cut(s) 840
TauI GCSGC 3 cut(s) 92, 518, 599
TfiI GAWTC 3 cut(s) 815, 868, 947
Tru1I TTAA 2 cut(s) 231, 1096
Tru9I TTAA 2 cut(s) 231, 1096
TscAI CASTG 2 cut(s) 351, 856
TseFI GTSAC 2 cut(s) 709, 971
TseI GCWGC 7 cut(s) 215, 336, 491, 593, 599, 651, 1047
Tsp45I GTSAC 2 cut(s) 709, 971
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 351, 856
VpaK11BI GGWCC 4 cut(s) 31, 780, 796, 935
XceI RCATGY 2 cut(s) 545, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XspI CTAG 2 cut(s) 195, 519
Zsp2I ATGCAT 2 cut(s) 543, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.