Rmu_sc0012870.1_g000009

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012870.1
OG0000734
Physical Location & Seq
Forward (+)
55913 .. 59254
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012870.1_g000009.1.cds

Sequence Viewer

Length: 1629 bp
atgaacgtttggatgagaaacaagtggattagaggcagaaaaggattcaaaaaaagatttggatggaaattaggaaggaaaaaagaaaagaaagatgatgaacttactgttctacatttcgcactctcaatctccaatttctgccaccgtcagatccaccgccccctccctcagatctcctttgatctacttcaaccatggaggcgattgaagagttgttgcaactgtcagactcgatgcgctaaggccaggccatcctcgccgacgaagacgttgacgaaaactctacagcctcctctcgccgctcctcaactttcctcaacgtcgtcgctctcggcaatgttcaccagcgtggagtcgtggaatgtaaagatccttgaagccctaccaagtgcaccagatcaggtcgtgaccaataacaggctgggtgatgatgaatatttcattcagaaaatcatttcgacgatcaagaaactgcagccaagtgaggaagcattttacgttctggatttgggtcttgtaagcaacctcatggacacatggaaacgtaaccttccaatggtccaatctttctacgccgtcaagtgcaacccacacccggatctcctcgccaccttggcggctcaaggttcaagtttcgactgtggaagtccgtctgagattgagtccattttagctcttggagtttctccggatcgcatcatctatgctaatccttgcaaagctagctctcacatccagtacgctgctgaagttggcgttaacgtaaccacttttgactcggtagatgagattgaaaagatccgaaaatggcacccgaaatgttctttactgatccgcatcaaagctcctgacgagagtggatgcagcttcccactgagttccaagttcggagctctccctgaagaagtgtctttgctcctccaagccgctcaaactgcaggactcagagtaactggggtttcatttcacataggcagtaagtcctacaattttcaagcatacaaaacagccatagaggcagctaagaaggttttccaggaggcggctaggctctgtatgcctcccatgcatgtgttggacattggcggtggcttcgtgtccgagccatcgttctttgaagctgcggcagcagtcgtgaaaacctctgtggagacctatttttcagaggaggagcgacgcagcttgaaggtgatagccgagccaggtcggttttttgcagagaccgctttcacgcttgtcaccaacatcatcgggaagcgtgtgagaggggcggtcagacaatactggatcaacgaagggttttttgggtccatgatgtgtgcggaccctaaaaccctacttgaatcctgcattgctctgaaatgcatgtacaataacagtgatggcatcgagaagaatccagtcttgatggtctgtggcaaagctactggctctgctcgcacttacagttcgactgtgtttggtccgacgtgtgattcggctgacaaggtgttggagggtgaccagttaccagaactggaggtgaataatttgctggtgtttcgcaacatgggtgcttatacgtcggcgtgtggcagccacttcaatggttttggctccgccaagatcacccatcttactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

542

Amino Acids

60.0

Weight (kDa)

8.94

Isoelectric Point (pI)

49.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 813
AccBSI CCGCTC 2 cut(s) 305, 932
AccIII TCCGGA 1 cut(s) 691
AclI AACGTT 1 cut(s) 6
AclWI GGATC 7 cut(s) 148, 367, 609, 702, 796, 829, 1298
AcuI CTGAAG 2 cut(s) 771, 924
AfaI GTAC 2 cut(s) 743, 1373
AfiI CCNNNNNNNGG 4 cut(s) 420, 559, 598, 1045
AflIII ACRYGT 1 cut(s) 1472
AjiI CACGTC 1 cut(s) 1473
AjnI CCWGG 3 cut(s) 248, 1038, 1204
AjuI GAANNNNNNNTTGG 2 cut(s) 1290, 1322
AleI CACNNNNGTG 1 cut(s) 350
Alw21I GWGCWC 2 cut(s) 397, 898
Alw26I GTCTC 2 cut(s) 1148, 1217
Alw44I GTGCAC 1 cut(s) 393
AlwI GGATC 7 cut(s) 148, 367, 609, 702, 796, 829, 1298
Aor13HI TCCGGA 1 cut(s) 691
AoxI GGCC 2 cut(s) 246, 251
ApaLI GTGCAC 1 cut(s) 393
ApeKI GCWGC 8 cut(s) 478, 746, 867, 1022, 1124, 1130, 1182, 1578
ArsI GACNNNNNNTTYG 2 cut(s) 1462, 1494
Asp700I GAANNNNTTC 1 cut(s) 1034
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 4 cut(s) 562, 1311, 1327, 1466
AsuC2I CCSGG 1 cut(s) 599
AsuHPI GGTGA 7 cut(s) 337, 440, 1204, 1234, 1514, 1537, 1603
AsuNHI GCTAGC 1 cut(s) 725
AvaII GGWCC 4 cut(s) 562, 1311, 1327, 1466
BaeGI GKGCMC 1 cut(s) 397
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 898
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 397, 898
BbvI GCAGC 8 cut(s) 490, 733, 879, 1034, 1111, 1142, 1194, 1590
BccI CCATC 6 cut(s) 57, 262, 1117, 1379, 1405, 1623
BceAI ACGGC 1 cut(s) 563
BciT130I CCWGG 3 cut(s) 250, 1040, 1206
BcnI CCSGG 1 cut(s) 599
BcoDI GTCTC 2 cut(s) 1148, 1217
BfaI CTAG 2 cut(s) 726, 1050
BfmI CTRYAG 3 cut(s) 287, 476, 939
BglI GCCNNNNNGGC 2 cut(s) 617, 1019
BglII AGATCT 1 cut(s) 174
Bme1390I CCNGG 4 cut(s) 250, 599, 1040, 1206
Bme18I GGWCC 4 cut(s) 562, 1311, 1327, 1466
BmgBI CACGTC 1 cut(s) 1473
BmgT120I GGNCC 4 cut(s) 562, 1311, 1327, 1466
BmiI GGNNCC 4 cut(s) 815, 1312, 1329, 1600
BmrFI CCNGG 4 cut(s) 250, 599, 1040, 1206
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 5 cut(s) 227, 708, 849, 854, 1398
BmtI GCTAGC 1 cut(s) 729
BmuI ACTGGG 1 cut(s) 966
BpiI GAAGAC 1 cut(s) 275
BpmI CTGGAG 1 cut(s) 1541
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 609
BpuMI CCSGG 1 cut(s) 599
BsaBI GATNNNNATC 1 cut(s) 839
BsaI GGTCTC 2 cut(s) 1148, 1217
BsaJI CCNNGG 2 cut(s) 197, 615
BsaWI WCCGGW 1 cut(s) 691
Bsc4I CCNNNNNNNGG 4 cut(s) 420, 559, 598, 1045
Bse1I ACTGG 7 cut(s) 739, 961, 1292, 1403, 1435, 1507, 1524
Bse3DI GCAATG 2 cut(s) 345, 1353
Bse8I GATNNNNATC 1 cut(s) 839
BseAI TCCGGA 1 cut(s) 691
BseBI CCWGG 3 cut(s) 250, 1040, 1206
BseDI CCNNGG 2 cut(s) 197, 615
BseGI GGATG 5 cut(s) 18, 68, 254, 735, 869
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 4 cut(s) 420, 559, 598, 1045
BseMI GCAATG 2 cut(s) 345, 1353
BseMII CTCAG 4 cut(s) 185, 648, 869, 961
BseNI ACTGG 7 cut(s) 739, 961, 1292, 1403, 1435, 1507, 1524
BseRI GAGGAG 6 cut(s) 285, 297, 596, 911, 1184, 1187
BseSI GKGCMC 1 cut(s) 397
BseXI GCAGC 8 cut(s) 490, 733, 879, 1034, 1111, 1142, 1194, 1590
BseYI CCCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 248, 253
BshNI GGYRCC 1 cut(s) 813
BsiHKAI GWGCWC 2 cut(s) 397, 898
BsiSI CCGG 2 cut(s) 599, 692
BslI CCNNNNNNNGG 4 cut(s) 420, 559, 598, 1045
BsmAI GTCTC 2 cut(s) 1148, 1217
BsnI GGCC 2 cut(s) 248, 253
Bso31I GGTCTC 2 cut(s) 1148, 1217
Bsp1286I GDGCHC 2 cut(s) 397, 898
Bsp13I TCCGGA 1 cut(s) 691
Bsp1407I TGTACA 1 cut(s) 1371
Bsp19I CCATGG 1 cut(s) 197
BspANI GGCC 2 cut(s) 248, 253
BspCNI CTCAG 4 cut(s) 184, 649, 870, 960
BspEI TCCGGA 1 cut(s) 691
BspLI GGNNCC 4 cut(s) 815, 1312, 1329, 1600
BspMAI CTGCAG 2 cut(s) 480, 943
BspOI GCTAGC 1 cut(s) 729
BspPI GGATC 7 cut(s) 148, 367, 609, 702, 796, 829, 1298
BspT107I GGYRCC 1 cut(s) 813
BspTNI GGTCTC 2 cut(s) 1148, 1217
BsrBI CCGCTC 2 cut(s) 305, 932
BsrDI GCAATG 2 cut(s) 345, 1353
BsrGI TGTACA 1 cut(s) 1371
BsrI ACTGG 7 cut(s) 739, 961, 1292, 1403, 1435, 1507, 1524
BssECI CCNNGG 2 cut(s) 197, 615
BssT1I CCWWGG 2 cut(s) 197, 615
Bst2UI CCWGG 3 cut(s) 250, 1040, 1206
Bst4CI ACNGT 7 cut(s) 109, 149, 227, 644, 1382, 1451, 1459
Bst6I CTCTTC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 1371
BstC8I GCNNGC 2 cut(s) 727, 1441
BstDEI CTNAG 6 cut(s) 171, 243, 657, 878, 947, 1026
BstDSI CCRYGG 1 cut(s) 197
BstEII GGTNACC 1 cut(s) 1502
BstF5I GGATG 5 cut(s) 18, 68, 254, 735, 869
BstHHI GCGC 1 cut(s) 242
BstMAI GTCTC 2 cut(s) 1148, 1217
BstNI CCWGG 3 cut(s) 250, 1040, 1206
BstNSI RCATGY 2 cut(s) 1076, 1372
BstPI GGTNACC 1 cut(s) 1502
BstSCI CCNGG 4 cut(s) 248, 597, 1038, 1204
BstSFI CTRYAG 3 cut(s) 287, 476, 939
BstSLI GKGCMC 1 cut(s) 397
BstV1I GCAGC 8 cut(s) 490, 733, 879, 1034, 1111, 1142, 1194, 1590
BstV2I GAAGAC 1 cut(s) 275
BstX2I RGATCY 5 cut(s) 153, 174, 372, 601, 801
BstXI CCANNNNNNTGG 1 cut(s) 1589
BstYI RGATCY 5 cut(s) 153, 174, 372, 601, 801
BsuRI GGCC 2 cut(s) 248, 253
BtgI CCRYGG 1 cut(s) 197
BtrI CACGTC 1 cut(s) 1473
BtsCI GGATG 5 cut(s) 18, 68, 254, 735, 869
BtsIMutI CAGTG 2 cut(s) 875, 1387
Cac8I GCNNGC 2 cut(s) 727, 1441
CfoI GCGC 1 cut(s) 242
Cfr13I GGNCC 4 cut(s) 562, 1311, 1327, 1466
CseI GACGC 1 cut(s) 1188
Csp6I GTAC 2 cut(s) 742, 1372
CviAII CATG 8 cut(s) 198, 532, 540, 1069, 1073, 1315, 1369, 1552
CviQI GTAC 2 cut(s) 742, 1372
DdeI CTNAG 6 cut(s) 171, 243, 657, 878, 947, 1026
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EciI GGCGGA 1 cut(s) 1591
Ecl136II GAGCTC 1 cut(s) 896
Eco130I CCWWGG 2 cut(s) 197, 615
Eco24I GRGCYC 1 cut(s) 898
Eco31I GGTCTC 2 cut(s) 1148, 1217
Eco47I GGWCC 4 cut(s) 562, 1311, 1327, 1466
Eco53kI GAGCTC 1 cut(s) 896
Eco57I CTGAAG 2 cut(s) 771, 924
Eco91I GGTNACC 1 cut(s) 1502
EcoICRI GAGCTC 1 cut(s) 896
EcoO65I GGTNACC 1 cut(s) 1502
EcoRII CCWGG 3 cut(s) 248, 1038, 1204
EcoT14I CCWWGG 2 cut(s) 197, 615
EcoT22I ATGCAT 2 cut(s) 1074, 1370
EcoT38I GRGCYC 1 cut(s) 898
ErhI CCWWGG 2 cut(s) 197, 615
FaeI CATG 8 cut(s) 201, 535, 543, 1072, 1076, 1318, 1372, 1555
FatI CATG 8 cut(s) 197, 531, 539, 1068, 1072, 1314, 1368, 1551
FokI GGATG 5 cut(s) 25, 75, 241, 722, 876
FriOI GRGCYC 1 cut(s) 898
FspBI CTAG 2 cut(s) 726, 1050
GlaI GCGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 428
GsuI CTGGAG 1 cut(s) 1541
HaeIII GGCC 2 cut(s) 248, 253
HapII CCGG 2 cut(s) 599, 692
HgaI GACGC 1 cut(s) 1188
HhaI GCGC 1 cut(s) 242
Hin1II CATG 8 cut(s) 201, 535, 543, 1072, 1076, 1318, 1372, 1555
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 2 cut(s) 276, 763
HindII GTYRAC 2 cut(s) 276, 763
HinfI GANTC 9 cut(s) 45, 232, 356, 665, 779, 945, 1346, 1399, 1478
HpaI GTTAAC 1 cut(s) 763
HpaII CCGG 2 cut(s) 599, 692
HphI GGTGA 7 cut(s) 337, 440, 1204, 1234, 1514, 1537, 1603
Hpy166II GTNNAC 4 cut(s) 276, 345, 395, 763
Hpy188III TCNNGA 9 cut(s) 409, 469, 506, 692, 851, 1138, 1255, 1393, 1408
Hpy8I GTNNAC 4 cut(s) 276, 345, 395, 763
Hpy99I CGWCG 7 cut(s) 268, 328, 331, 466, 1182, 1474, 1570
HpyAV CCTTC 5 cut(s) 69, 563, 1024, 1183, 1292
HpyCH4III ACNGT 7 cut(s) 109, 149, 227, 644, 1382, 1451, 1459
HpyCH4IV ACGT 8 cut(s) 6, 272, 323, 501, 547, 765, 1472, 1565
HpyF3I CTNAG 6 cut(s) 171, 243, 657, 878, 947, 1026
HpySE526I ACGT 8 cut(s) 6, 272, 323, 501, 547, 765, 1472, 1565
Hsp92II CATG 8 cut(s) 201, 535, 543, 1072, 1076, 1318, 1372, 1555
HspAI GCGC 1 cut(s) 240
Kpn2I TCCGGA 1 cut(s) 691
KspAI GTTAAC 1 cut(s) 763
LmnI GCTCC 6 cut(s) 310, 853, 893, 924, 1174, 1604
Lsp1109I GCAGC 8 cut(s) 490, 733, 879, 1034, 1111, 1142, 1194, 1590
LweI GCATC 5 cut(s) 227, 708, 849, 854, 1398
MaeI CTAG 2 cut(s) 726, 1050
MaeII ACGT 8 cut(s) 6, 272, 323, 501, 547, 765, 1472, 1565
MaeIII GTNAC 7 cut(s) 409, 548, 766, 952, 1240, 1502, 1509
MbiI CCGCTC 2 cut(s) 305, 932
MboII GAAGA 4 cut(s) 223, 280, 917, 1408
MflI RGATCY 5 cut(s) 153, 174, 372, 601, 801
MhlI GDGCHC 2 cut(s) 397, 898
MluCI AATT 5 cut(s) 68, 136, 991, 1531, 1624
MlyI GAGTC 5 cut(s) 226, 365, 674, 773, 939
MmeI TCCRAC 3 cut(s) 1059, 1476, 1493
Mph1103I ATGCAT 2 cut(s) 1074, 1370
MroI TCCGGA 1 cut(s) 691
MroXI GAANNNNTTC 1 cut(s) 1034
MseI TTAA 2 cut(s) 762, 1627
MslI CAYNNNNRTG 3 cut(s) 350, 1073, 1587
MspI CCGG 2 cut(s) 599, 692
MspR9I CCNGG 4 cut(s) 250, 599, 1040, 1206
MvaI CCWGG 3 cut(s) 250, 1040, 1206
NciI CCSGG 1 cut(s) 599
NcoI CCATGG 1 cut(s) 197
NheI GCTAGC 1 cut(s) 725
NlaIII CATG 8 cut(s) 201, 535, 543, 1072, 1076, 1318, 1372, 1555
NlaIV GGNNCC 4 cut(s) 815, 1312, 1329, 1600
NmeAIII GCCGAG 2 cut(s) 314, 1225
NmuCI GTSAC 3 cut(s) 409, 1240, 1502
NsiI ATGCAT 2 cut(s) 1074, 1370
NspI RCATGY 2 cut(s) 1076, 1372
OliI CACNNNNGTG 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 1034
PfeI GAWTC 4 cut(s) 45, 1346, 1399, 1478
PfoI TCCNGGA 1 cut(s) 1038
PleI GAGTC 5 cut(s) 226, 364, 673, 773, 939
PpsI GAGTC 5 cut(s) 226, 364, 673, 773, 939
Psp124BI GAGCTC 1 cut(s) 898
Psp1406I AACGTT 1 cut(s) 6
Psp6I CCWGG 3 cut(s) 248, 1038, 1204
PspEI GGTNACC 1 cut(s) 1502
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 3 cut(s) 248, 1038, 1204
PspN4I GGNNCC 4 cut(s) 815, 1312, 1329, 1600
PspPI GGNCC 4 cut(s) 562, 1311, 1327, 1466
PstI CTGCAG 2 cut(s) 480, 943
PsuI RGATCY 5 cut(s) 153, 174, 372, 601, 801
RsaI GTAC 2 cut(s) 743, 1373
RsaNI GTAC 2 cut(s) 742, 1372
RseI CAYNNNNRTG 3 cut(s) 350, 1073, 1587
SacI GAGCTC 1 cut(s) 898
SaqAI TTAA 2 cut(s) 762, 1627
Sau96I GGNCC 4 cut(s) 562, 1311, 1327, 1466
SchI GAGTC 5 cut(s) 226, 365, 674, 773, 939
ScrFI CCNGG 4 cut(s) 250, 599, 1040, 1206
SduI GDGCHC 2 cut(s) 397, 898
SfaNI GCATC 5 cut(s) 227, 708, 849, 854, 1398
SfcI CTRYAG 3 cut(s) 287, 476, 939
SinI GGWCC 4 cut(s) 562, 1311, 1327, 1466
SmiMI CAYNNNNRTG 3 cut(s) 350, 1073, 1587
SmlI CTYRAG 1 cut(s) 624
SmoI CTYRAG 1 cut(s) 624
Sse9I AATT 5 cut(s) 68, 136, 991, 1531, 1624
SspI AATATT 1 cut(s) 440
SspMI CTAG 2 cut(s) 726, 1050
SstI GAGCTC 1 cut(s) 898
StyD4I CCNGG 4 cut(s) 248, 597, 1038, 1204
StyI CCWWGG 2 cut(s) 197, 615
TaaI ACNGT 7 cut(s) 109, 149, 227, 644, 1382, 1451, 1459
TaiI ACGT 8 cut(s) 9, 275, 326, 504, 550, 768, 1475, 1568
TaqI TCGA 5 cut(s) 235, 461, 639, 1392, 1454
TasI AATT 5 cut(s) 68, 136, 991, 1531, 1624
TatI WGTACW 1 cut(s) 1371
TauI GCSGC 5 cut(s) 305, 623, 932, 1049, 1130
TfiI GAWTC 4 cut(s) 45, 1346, 1399, 1478
Tru1I TTAA 2 cut(s) 762, 1627
Tru9I TTAA 2 cut(s) 762, 1627
TscAI CASTG 2 cut(s) 882, 1387
TseFI GTSAC 3 cut(s) 409, 1240, 1502
TseI GCWGC 8 cut(s) 478, 746, 867, 1022, 1124, 1130, 1182, 1578
Tsp45I GTSAC 3 cut(s) 409, 1240, 1502
TspDTI ATGAA 5 cut(s) 17, 114, 433, 450, 954
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 2 cut(s) 882, 1387
VneI GTGCAC 1 cut(s) 393
VpaK11BI GGWCC 4 cut(s) 562, 1311, 1327, 1466
XceI RCATGY 2 cut(s) 1076, 1372
XcmI CCANNNNNNNNNTGG 2 cut(s) 421, 1075
XmnI GAANNNNTTC 1 cut(s) 1034
XspI CTAG 2 cut(s) 726, 1050
Zsp2I ATGCAT 2 cut(s) 1074, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.