Rmu_sc0028785.1_g000001

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028785.1
OG0000734
Physical Location & Seq
Reverse (-)
451 .. 1551
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028785.1_g000001.1.cds

Sequence Viewer

Length: 1101 bp
atggacacctggaaacataaccttccgatggtccaacccttctacgctgttaaatgcaatccacacccggatctcctcgccaccttggttgctcaaggctcaagtttcgactgtgcaagtcggtctgagattgaatccattttggctctgggagtttctccagatcgcattatctatgctaatccttgtaaagcttgctctcacatcaagtatgctgccgcagttggcgttaacctaaccacttttgattcagtagatgaggttcataagatccgaaaattgcacccggaatgttctttactaatccgcatcaaagctccggacgagagtgggagcaggtggccaatgagttccaagtacggtgctcttcccgacgaagtgcctaagctcctccaagccgctcaaactaaaggactcaaagttgttggggtatcatttcatatagggagtaagtcccacaattatcaagcatataacacagcaatacaggcagctaaggccgtttttcaggaggcggataggctctgcatgcctcccatgcatgtgttgaacattggcggtggcttcgtgtccgatgcattgtgctttgaagctgcggcatcagcagtgaaaactgccgtggacaagtacttttcaaaggagcagagaaaaaacttaaagatgatggccgagcccggtcggttctttgcggagacggctttcacgcttgccaccaacatcattgggaagcgagtgagaggggaggtcagacattactggatcaacgaagggttccatggctccatgatgcgcgtggatcgtacagcgctagttgaatcgtgcatttctctgaaatgcatgtccaataacagtagtgacgacaatgagaagaacccaggcattatggtatgtggtaaaggtgtcggtggtgctcgcacttacagttcgattgtgtttggtccgacgtgtgatcccattgacaaggtcttggagggtcaccagctaccagaattggaggtgaatgattggctggtgtttcagaatatgggtgcttatacgtcatcctgtagcaacaagtttaatggttttggcgcagccaagatcacctaccttactaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

366

Amino Acids

40.07

Weight (kDa)

8.37

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 327
Acc36I ACCTGC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 401
AccII CGCG 1 cut(s) 792
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 7 cut(s) 219, 307, 399, 515, 558, 596, 689
AclWI GGATC 5 cut(s) 78, 265, 767, 804, 944
AcoI YGGCCR 2 cut(s) 341, 666
AfaI GTAC 3 cut(s) 359, 629, 802
AfeI AGCGCT 1 cut(s) 807
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 944
AgsI TTSAA 5 cut(s) 134, 550, 590, 636, 815
AjiI CACGTC 1 cut(s) 945
AjnI CCWGG 2 cut(s) 8, 874
AluBI AGCT 6 cut(s) 194, 317, 388, 494, 593, 982
AluI AGCT 6 cut(s) 194, 317, 388, 494, 593, 982
Alw21I GWGCWC 2 cut(s) 367, 913
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 5 cut(s) 78, 265, 767, 804, 944
Aor13HI TCCGGA 1 cut(s) 319
Aor51HI AGCGCT 1 cut(s) 807
AoxI GGCC 3 cut(s) 341, 498, 666
ApeKI GCWGC 4 cut(s) 215, 491, 593, 1073
AspLEI GCGC 3 cut(s) 792, 808, 1073
AspS9I GGNCC 2 cut(s) 31, 938
AsuC2I CCSGG 3 cut(s) 68, 287, 675
AsuHPI GGTGA 3 cut(s) 968, 1009, 1075
AvaII GGWCC 2 cut(s) 31, 938
BalI TGGCCA 1 cut(s) 343
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 367, 913
BbvI GCAGC 4 cut(s) 202, 503, 580, 1085
BccI CCATC 2 cut(s) 22, 658
BceAI ACGGC 3 cut(s) 485, 602, 711
BciT130I CCWGG 2 cut(s) 10, 876
BcnI CCSGG 3 cut(s) 68, 287, 675
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 1045
BfoI RGCGCY 1 cut(s) 809
BfuAI ACCTGC 1 cut(s) 327
BisI GCNGC 7 cut(s) 216, 219, 399, 492, 594, 597, 1074
BlsI GCNGC 7 cut(s) 217, 220, 400, 493, 595, 598, 1075
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 5 cut(s) 10, 68, 287, 675, 876
Bme18I GGWCC 2 cut(s) 31, 938
BmgBI CACGTC 1 cut(s) 945
BmgT120I GGNCC 2 cut(s) 31, 938
BmiI GGNNCC 2 cut(s) 773, 781
BmrFI CCNGG 5 cut(s) 10, 68, 287, 675, 876
BmsI GCATC 4 cut(s) 318, 565, 608, 777
BpmI CTGGAG 1 cut(s) 144
Bpu10I CCTNAGC 2 cut(s) 384, 495
BpuEI CTTGAG 2 cut(s) 78, 85
BpuMI CCSGG 3 cut(s) 68, 287, 675
BsaJI CCNNGG 4 cut(s) 84, 618, 775, 874
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 1 cut(s) 761
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 2 cut(s) 10, 876
BseDI CCNNGG 4 cut(s) 84, 618, 775, 874
BseGI GGATG 1 cut(s) 1040
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 2 cut(s) 65, 380
BseXI GCAGC 4 cut(s) 202, 503, 580, 1085
Bsh1236I CGCG 1 cut(s) 792
Bsh1285I CGRYCG 1 cut(s) 679
BshFI GGCC 3 cut(s) 343, 500, 668
BsiEI CGRYCG 1 cut(s) 679
BsiHKAI GWGCWC 2 cut(s) 367, 913
BsiSI CCGG 4 cut(s) 68, 287, 320, 675
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 686
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 3 cut(s) 343, 500, 668
Bsp1286I GDGCHC 3 cut(s) 367, 675, 913
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
Bsp19I CCATGG 1 cut(s) 775
BspACI CCGC 7 cut(s) 219, 307, 399, 515, 558, 596, 689
BspANI GGCC 3 cut(s) 343, 500, 668
BspCNI CTCAG 1 cut(s) 118
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 1 cut(s) 792
BspLI GGNNCC 2 cut(s) 773, 781
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 5 cut(s) 78, 265, 767, 804, 944
BspQI GCTCTTC 1 cut(s) 372
BsrBI CCGCTC 1 cut(s) 401
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 4 cut(s) 84, 618, 775, 874
BssMI GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
BssT1I CCWWGG 2 cut(s) 84, 775
Bst2UI CCWGG 2 cut(s) 10, 876
Bst4CI ACNGT 4 cut(s) 113, 362, 851, 923
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 4 cut(s) 196, 530, 708, 913
BstDEI CTNAG 3 cut(s) 126, 384, 495
BstDSI CCRYGG 2 cut(s) 618, 775
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 1 cut(s) 1040
BstFNI CGCG 1 cut(s) 792
BstH2I RGCGCY 1 cut(s) 809
BstHHI GCGC 3 cut(s) 792, 808, 1073
BstKTI GATC 7 cut(s) 73, 166, 273, 762, 799, 952, 1083
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
BstMCI CGRYCG 1 cut(s) 679
BstMWI GCNNNNNNNGC 6 cut(s) 488, 497, 529, 538, 602, 695
BstNI CCWGG 2 cut(s) 10, 876
BstNSI RCATGY 3 cut(s) 532, 545, 841
BstPI GGTNACC 1 cut(s) 974
BstSCI CCNGG 5 cut(s) 8, 66, 285, 673, 874
BstSFI CTRYAG 1 cut(s) 1045
BstUI CGCG 1 cut(s) 792
BstV1I GCAGC 4 cut(s) 202, 503, 580, 1085
BstX2I RGATCY 2 cut(s) 70, 270
BstYI RGATCY 2 cut(s) 70, 270
BsuRI GGCC 3 cut(s) 343, 500, 668
BtgI CCRYGG 2 cut(s) 618, 775
BtrI CACGTC 1 cut(s) 945
BtsCI GGATG 1 cut(s) 1040
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 1 cut(s) 327
Cac8I GCNNGC 4 cut(s) 196, 530, 708, 913
CfoI GCGC 3 cut(s) 792, 808, 1073
Cfr13I GGNCC 2 cut(s) 31, 938
Csp6I GTAC 3 cut(s) 358, 628, 801
CspCI CAANNNNNGTGG 2 cut(s) 70, 105
CviAII CATG 6 cut(s) 529, 538, 542, 776, 784, 838
CviQI GTAC 3 cut(s) 358, 628, 801
DdeI CTNAG 3 cut(s) 126, 384, 495
DpnI GATC 7 cut(s) 72, 165, 272, 761, 798, 951, 1082
DpnII GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
EaeI YGGCCR 2 cut(s) 341, 666
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 530
Eco130I CCWWGG 2 cut(s) 84, 775
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 31, 938
Eco47III AGCGCT 1 cut(s) 807
Eco91I GGTNACC 1 cut(s) 974
EcoO65I GGTNACC 1 cut(s) 974
EcoRII CCWGG 2 cut(s) 8, 874
EcoT14I CCWWGG 2 cut(s) 84, 775
EcoT22I ATGCAT 3 cut(s) 543, 580, 839
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 84, 775
Esp3I CGTCTC 1 cut(s) 686
FaeI CATG 6 cut(s) 532, 541, 545, 779, 787, 841
FaqI GGGAC 1 cut(s) 439
FatI CATG 6 cut(s) 528, 537, 541, 775, 783, 837
Fnu4HI GCNGC 7 cut(s) 216, 219, 399, 492, 594, 597, 1074
FokI GGATG 1 cut(s) 1027
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 7 cut(s) 216, 219, 399, 492, 594, 597, 1074
FspBI CTAG 1 cut(s) 809
GlaI GCGC 3 cut(s) 791, 807, 1072
GluI GCNGC 7 cut(s) 216, 219, 399, 492, 594, 597, 1074
GsuI CTGGAG 1 cut(s) 144
HaeII RGCGCY 1 cut(s) 809
HaeIII GGCC 3 cut(s) 343, 500, 668
HapII CCGG 4 cut(s) 68, 287, 320, 675
HhaI GCGC 3 cut(s) 792, 808, 1073
Hin1II CATG 6 cut(s) 532, 541, 545, 779, 787, 841
Hin6I GCGC 3 cut(s) 790, 806, 1071
HinP1I GCGC 3 cut(s) 790, 806, 1071
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 4 cut(s) 134, 248, 414, 815
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 4 cut(s) 68, 287, 320, 675
HphI GGTGA 3 cut(s) 968, 1009, 1075
Hpy166II GTNNAC 2 cut(s) 232, 622
Hpy188I TCNGA 8 cut(s) 27, 127, 275, 574, 749, 831, 942, 1020
Hpy188III TCNNGA 4 cut(s) 161, 320, 371, 509
Hpy8I GTNNAC 2 cut(s) 232, 622
Hpy99I CGWCG 2 cut(s) 377, 946
HpyAV CCTTC 3 cut(s) 32, 49, 761
HpyCH4III ACNGT 4 cut(s) 113, 362, 851, 923
HpyCH4IV ACGT 2 cut(s) 944, 1037
HpyCH4V TGCA 8 cut(s) 57, 116, 283, 528, 541, 578, 822, 837
HpyF10VI GCNNNNNNNGC 6 cut(s) 488, 497, 529, 538, 602, 695
HpyF3I CTNAG 3 cut(s) 126, 384, 495
HpySE526I ACGT 2 cut(s) 944, 1037
Hsp92II CATG 6 cut(s) 532, 541, 545, 779, 787, 841
HspAI GCGC 3 cut(s) 790, 806, 1071
Kpn2I TCCGGA 1 cut(s) 319
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 5 cut(s) 322, 333, 393, 640, 785
Lsp1109I GCAGC 4 cut(s) 202, 503, 580, 1085
LweI GCATC 4 cut(s) 318, 565, 608, 777
MaeI CTAG 1 cut(s) 809
MaeII ACGT 2 cut(s) 944, 1037
MaeIII GTNAC 2 cut(s) 854, 974
MalI GATC 7 cut(s) 72, 165, 272, 761, 798, 951, 1082
MbiI CCGCTC 1 cut(s) 401
MboI GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
MboII GAAGA 2 cut(s) 359, 880
MflI RGATCY 2 cut(s) 70, 270
MhlI GDGCHC 3 cut(s) 367, 675, 913
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 4 cut(s) 278, 460, 989, 1096
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 2 cut(s) 58, 965
MnlI CCTC 9 cut(s) 86, 253, 401, 505, 543, 731, 736, 964, 988
Mox20I TGGCCA 1 cut(s) 343
Mph1103I ATGCAT 3 cut(s) 543, 580, 839
MroI TCCGGA 1 cut(s) 319
MscI TGGCCA 1 cut(s) 343
MseI TTAA 5 cut(s) 51, 231, 656, 1059, 1099
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 343
MspI CCGG 4 cut(s) 68, 287, 320, 675
MspR9I CCNGG 5 cut(s) 10, 68, 287, 675, 876
MvaI CCWGG 2 cut(s) 10, 876
MvnI CGCG 1 cut(s) 792
MwoI GCNNNNNNNGC 6 cut(s) 488, 497, 529, 538, 602, 695
NciI CCSGG 3 cut(s) 68, 287, 675
NcoI CCATGG 1 cut(s) 775
NdeII GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
NlaIII CATG 6 cut(s) 532, 541, 545, 779, 787, 841
NlaIV GGNNCC 2 cut(s) 773, 781
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 2 cut(s) 854, 974
NsiI ATGCAT 3 cut(s) 543, 580, 839
NspI RCATGY 3 cut(s) 532, 545, 841
PaeI GCATGC 1 cut(s) 532
PaqCI CACCTGC 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 372
PfeI GAWTC 3 cut(s) 134, 248, 815
PflFI GACNNNGTC 1 cut(s) 962
PkrI GCNGC 7 cut(s) 217, 220, 400, 493, 595, 598, 1075
PleI GAGTC 1 cut(s) 408
PpsI GAGTC 1 cut(s) 408
Psp6I CCWGG 2 cut(s) 8, 874
PspEI GGTNACC 1 cut(s) 974
PspGI CCWGG 2 cut(s) 8, 874
PspN4I GGNNCC 2 cut(s) 773, 781
PspPI GGNCC 2 cut(s) 31, 938
PsrI GAACNNNNNNTAC 2 cut(s) 246, 278
PsuI RGATCY 2 cut(s) 70, 270
PsyI GACNNNGTC 1 cut(s) 962
RsaI GTAC 3 cut(s) 359, 629, 802
RsaNI GTAC 3 cut(s) 358, 628, 801
RseI CAYNNNNRTG 1 cut(s) 542
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 5 cut(s) 51, 231, 656, 1059, 1099
SatI GCNGC 7 cut(s) 216, 219, 399, 492, 594, 597, 1074
Sau3AI GATC 7 cut(s) 70, 163, 270, 759, 796, 949, 1080
Sau96I GGNCC 2 cut(s) 31, 938
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 5 cut(s) 10, 68, 287, 675, 876
SduI GDGCHC 3 cut(s) 367, 675, 913
SfaNI GCATC 4 cut(s) 318, 565, 608, 777
SfcI CTRYAG 1 cut(s) 1045
SinI GGWCC 2 cut(s) 31, 938
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 2 cut(s) 93, 100
SmoI CTYRAG 2 cut(s) 93, 100
SphI GCATGC 1 cut(s) 532
Sse9I AATT 4 cut(s) 278, 460, 989, 1096
SsiI CCGC 7 cut(s) 219, 307, 399, 515, 558, 596, 689
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 5 cut(s) 8, 66, 285, 673, 874
StyI CCWWGG 2 cut(s) 84, 775
TaaI ACNGT 4 cut(s) 113, 362, 851, 923
TaiI ACGT 2 cut(s) 947, 1040
TaqI TCGA 2 cut(s) 108, 926
TaqII GACCGA 1 cut(s) 111
TasI AATT 4 cut(s) 278, 460, 989, 1096
TatI WGTACW 1 cut(s) 627
TauI GCSGC 3 cut(s) 221, 401, 599
TfiI GAWTC 3 cut(s) 134, 248, 815
Tru1I TTAA 5 cut(s) 51, 231, 656, 1059, 1099
Tru9I TTAA 5 cut(s) 51, 231, 656, 1059, 1099
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 2 cut(s) 854, 974
TseI GCWGC 4 cut(s) 215, 491, 593, 1073
Tsp45I GTSAC 2 cut(s) 854, 974
TspDTI ATGAA 2 cut(s) 254, 428
TspRI CASTG 1 cut(s) 612
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 31, 938
XceI RCATGY 3 cut(s) 532, 545, 841
XcmI CCANNNNNNNNNTGG 2 cut(s) 145, 790
XspI CTAG 1 cut(s) 809
ZrmI AGTACT 1 cut(s) 629
Zsp2I ATGCAT 3 cut(s) 543, 580, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.