RLG00000006885

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000734
Physical Location & Seq
Forward (+)
11522038 .. 11523488
1451 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006885

Sequence Viewer

Length: 1107 bp
ATGGATGTAAACAGCGTTGAACCCCGACTAAGTGCACCAGATAAGGTCATGAGCAATTACGGGCTGAGTAGTCATGAATATTTCCTAGAGAAAATCATTTCGACGATCAAGAAACAGCAAAGTGAGGAAGCATTTTATGTGCTGGATTTAGGTGTTGTCATTAACCTCATGGACACGTGGAAACATCGCATTATCTATGCTAATCCTTGTAAGGCTTGCTCTCACATCAAGTATGCTGCCGAAGTTGGCGTTAACCTAACCACTTTTGATTCAGTAGATGAGGTTCATAAGATCAGAAAATTGCACCCGGAATGTTCTTTACTAATCCGCATCAAAGCTCCGGACCAGAGTGGGAGCAGGTGGCCAATGAGTTCCAAGTACGGTGCTCTTCCCGAAGAAGTGCCTAAGCTCCTCCAAGCCGCTCAAACTAAAGGACTCAAAGTTGTTGGGGTATCATTTCATATAGGGAGTAAGTCCCACAATTATCAAGCATATAAAACAGCAATACAGGCAGCTAAGGCGGTTTTTCAGGAGGCGGATAGGCTCTGCATGCCTCCCATGCATGTGTTGAACATTGGCGGTGGCTTCGTGTCCGATGCATTGTGCTTTGAAGCTGCGGCAACAACCGACAAGTACTTTTCAAAGGAGGAGCGACAAAACTTAATGATGATGGCCGAGCCCGGTCGGTTCTTTGCGGAGACGGCTTTCACGCTTGCCACCAACATCATTGGGAAGCGAGTGAGAGGGGAGGTCAGACATTACTGGATCAACGAAGGGTTCCATGGCTCCATGATGCGCGTGGATCGTACAGCGCTAGTTGAATCGTGCATTTCTCTGAAATGCATGTCCAATAACAGTGGTGACGGCGATGAGAAGAACCCAGGCATTATGGTACGTGGTAAAGGTGTCGGTGGTGCTCGCACTTACAGTTCGATTGTGTTTGGTCCAACGTGTGATCCCATTGACAAGGTCTTGGAGGGTCACCAGCTACCAGAATTGGAGGTGAATGATTGGCTGGTGTTTCAGAATATGGGTGCTTATACGTCATCCTGTAGCAACAAGTTTAATGGTTTTGGCGCAGCCAAGATCACCTACCTTACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

369

Amino Acids

40.82

Weight (kDa)

7.59

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_DAP_Arg_deC PF00278 45 - 345 5.4e-15 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Orn_Arg_deC_N PF02784 61 - 232 2.2e-40 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 348
AccBSI CCGCTC 1 cut(s) 422
AccII CGCG 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 7 cut(s) 328, 420, 521, 536, 579, 617, 695
AclWI GGATC 3 cut(s) 773, 810, 950
AcoI YGGCCR 2 cut(s) 362, 672
AcvI CACGTG 1 cut(s) 177
AfaI GTAC 4 cut(s) 380, 635, 808, 894
AfeI AGCGCT 1 cut(s) 813
AflIII ACRYGT 2 cut(s) 174, 950
AgsI TTSAA 5 cut(s) 20, 571, 611, 642, 821
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 5 cut(s) 338, 409, 515, 614, 988
AluI AGCT 5 cut(s) 338, 409, 515, 614, 988
Alw21I GWGCWC 3 cut(s) 37, 388, 919
Alw26I GTCTC 1 cut(s) 692
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 3 cut(s) 773, 810, 950
Aor13HI TCCGGA 1 cut(s) 340
Aor51HI AGCGCT 1 cut(s) 813
AoxI GGCC 2 cut(s) 362, 672
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 4 cut(s) 236, 512, 614, 1079
AspLEI GCGC 3 cut(s) 798, 814, 1079
AspS9I GGNCC 2 cut(s) 343, 944
AsuC2I CCSGG 2 cut(s) 308, 681
AsuHPI GGTGA 4 cut(s) 872, 974, 1015, 1081
AvaII GGWCC 2 cut(s) 343, 944
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 364
BanII GRGCYC 1 cut(s) 681
BbrPI CACGTG 1 cut(s) 177
Bbv12I GWGCWC 3 cut(s) 37, 388, 919
BbvI GCAGC 4 cut(s) 223, 524, 601, 1091
BccI CCATC 1 cut(s) 664
BceAI ACGGC 2 cut(s) 717, 880
BciT130I CCWGG 1 cut(s) 882
BcnI CCSGG 2 cut(s) 308, 681
BcoDI GTCTC 1 cut(s) 692
BfaI CTAG 2 cut(s) 86, 815
BfmI CTRYAG 1 cut(s) 1051
BfoI RGCGCY 1 cut(s) 815
BfuAI ACCTGC 1 cut(s) 348
BisI GCNGC 6 cut(s) 237, 420, 513, 615, 618, 1080
BlsI GCNGC 6 cut(s) 238, 421, 514, 616, 619, 1081
BmcAI AGTACT 1 cut(s) 635
Bme1390I CCNGG 3 cut(s) 308, 681, 882
Bme18I GGWCC 2 cut(s) 343, 944
BmgT120I GGNCC 2 cut(s) 343, 944
BmiI GGNNCC 2 cut(s) 779, 787
BmrFI CCNGG 3 cut(s) 308, 681, 882
BmsI GCATC 3 cut(s) 339, 586, 783
Bpu10I CCTNAGC 2 cut(s) 405, 516
BpuMI CCSGG 2 cut(s) 308, 681
BsaAI YACGTR 2 cut(s) 177, 896
BsaJI CCNNGG 2 cut(s) 781, 880
BsaWI WCCGGW 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 767
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 781, 880
BseGI GGATG 2 cut(s) 10, 1046
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 767
BseRI GAGGAG 2 cut(s) 401, 662
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 4 cut(s) 223, 524, 601, 1091
Bsh1236I CGCG 1 cut(s) 798
Bsh1285I CGRYCG 1 cut(s) 685
BshFI GGCC 2 cut(s) 364, 674
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 3 cut(s) 37, 388, 919
BsiSI CCGG 3 cut(s) 308, 341, 681
BslFI GGGAC 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 692
BsmBI CGTCTC 1 cut(s) 692
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 2 cut(s) 364, 674
Bsp1286I GDGCHC 4 cut(s) 37, 388, 681, 919
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
Bsp19I CCATGG 1 cut(s) 781
BspACI CCGC 7 cut(s) 328, 420, 521, 536, 579, 617, 695
BspANI GGCC 2 cut(s) 364, 674
BspCNI CTCAG 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 1 cut(s) 798
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 2 cut(s) 779, 787
BspMI ACCTGC 1 cut(s) 348
BspPI GGATC 3 cut(s) 773, 810, 950
BspQI GCTCTTC 1 cut(s) 393
BsrBI CCGCTC 1 cut(s) 422
BsrI ACTGG 1 cut(s) 767
BssECI CCNNGG 2 cut(s) 781, 880
BssMI GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
BssT1I CCWWGG 1 cut(s) 781
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 3 cut(s) 383, 857, 929
Bst6I CTCTTC 1 cut(s) 393
BstBAI YACGTR 2 cut(s) 177, 896
BstC8I GCNNGC 4 cut(s) 217, 551, 714, 919
BstDEI CTNAG 4 cut(s) 29, 65, 405, 516
BstDSI CCRYGG 1 cut(s) 781
BstEII GGTNACC 1 cut(s) 980
BstF5I GGATG 2 cut(s) 10, 1046
BstFNI CGCG 1 cut(s) 798
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 3 cut(s) 798, 814, 1079
BstKTI GATC 6 cut(s) 108, 294, 768, 805, 958, 1089
BstMAI GTCTC 1 cut(s) 692
BstMBI GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 5 cut(s) 509, 518, 550, 559, 701
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 3 cut(s) 553, 566, 847
BstPI GGTNACC 1 cut(s) 980
BstSCI CCNGG 3 cut(s) 306, 679, 880
BstSFI CTRYAG 1 cut(s) 1051
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 223, 524, 601, 1091
BsuRI GGCC 2 cut(s) 364, 674
BtgI CCRYGG 1 cut(s) 781
BtgZI GCGATG 2 cut(s) 170, 882
BtsCI GGATG 2 cut(s) 10, 1046
BtsIMutI CAGTG 1 cut(s) 862
BveI ACCTGC 1 cut(s) 348
Cac8I GCNNGC 4 cut(s) 217, 551, 714, 919
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 3 cut(s) 798, 814, 1079
Cfr13I GGNCC 2 cut(s) 343, 944
Csp6I GTAC 4 cut(s) 379, 634, 807, 893
CspCI CAANNNNNGTGG 2 cut(s) 838, 873
CviAII CATG 9 cut(s) 49, 74, 169, 550, 559, 563, 782, 790, 844
CviQI GTAC 4 cut(s) 379, 634, 807, 893
DdeI CTNAG 4 cut(s) 29, 65, 405, 516
DpnI GATC 6 cut(s) 107, 293, 767, 804, 957, 1088
DpnII GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
EaeI YGGCCR 2 cut(s) 362, 672
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 551
Eco130I CCWWGG 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 681
Eco47I GGWCC 2 cut(s) 343, 944
Eco47III AGCGCT 1 cut(s) 813
Eco72I CACGTG 1 cut(s) 177
Eco91I GGTNACC 1 cut(s) 980
EcoO65I GGTNACC 1 cut(s) 980
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 781
EcoT22I ATGCAT 3 cut(s) 564, 601, 845
EcoT38I GRGCYC 1 cut(s) 681
ErhI CCWWGG 1 cut(s) 781
Esp3I CGTCTC 1 cut(s) 692
FaeI CATG 9 cut(s) 52, 77, 172, 553, 562, 566, 785, 793, 847
FaqI GGGAC 1 cut(s) 460
FatI CATG 9 cut(s) 48, 73, 168, 549, 558, 562, 781, 789, 843
Fnu4HI GCNGC 6 cut(s) 237, 420, 513, 615, 618, 1080
FokI GGATG 2 cut(s) 17, 1033
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 6 cut(s) 237, 420, 513, 615, 618, 1080
FspBI CTAG 2 cut(s) 86, 815
GlaI GCGC 3 cut(s) 797, 813, 1078
GluI GCNGC 6 cut(s) 237, 420, 513, 615, 618, 1080
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 2 cut(s) 364, 674
HapII CCGG 3 cut(s) 308, 341, 681
HhaI GCGC 3 cut(s) 798, 814, 1079
Hin1II CATG 9 cut(s) 52, 77, 172, 553, 562, 566, 785, 793, 847
Hin6I GCGC 3 cut(s) 796, 812, 1077
HinP1I GCGC 3 cut(s) 796, 812, 1077
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 3 cut(s) 269, 435, 821
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 3 cut(s) 308, 341, 681
HphI GGTGA 4 cut(s) 872, 974, 1015, 1081
Hpy166II GTNNAC 3 cut(s) 10, 35, 253
Hpy188I TCNGA 5 cut(s) 296, 595, 755, 837, 1026
Hpy188III TCNNGA 6 cut(s) 49, 74, 109, 341, 392, 530
Hpy8I GTNNAC 3 cut(s) 10, 35, 253
Hpy99I CGWCG 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 767
HpyCH4III ACNGT 3 cut(s) 383, 857, 929
HpyCH4IV ACGT 4 cut(s) 176, 895, 950, 1043
HpyCH4V TGCA 7 cut(s) 35, 304, 549, 562, 599, 828, 843
HpyF10VI GCNNNNNNNGC 5 cut(s) 509, 518, 550, 559, 701
HpyF3I CTNAG 4 cut(s) 29, 65, 405, 516
HpySE526I ACGT 4 cut(s) 176, 895, 950, 1043
Hsp92II CATG 9 cut(s) 52, 77, 172, 553, 562, 566, 785, 793, 847
HspAI GCGC 3 cut(s) 796, 812, 1077
Kpn2I TCCGGA 1 cut(s) 340
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
LguI GCTCTTC 1 cut(s) 393
LmnI GCTCC 5 cut(s) 343, 354, 414, 649, 791
Lsp1109I GCAGC 4 cut(s) 223, 524, 601, 1091
LweI GCATC 3 cut(s) 339, 586, 783
MaeI CTAG 2 cut(s) 86, 815
MaeII ACGT 4 cut(s) 176, 895, 950, 1043
MaeIII GTNAC 2 cut(s) 860, 980
MalI GATC 6 cut(s) 107, 293, 767, 804, 957, 1088
MbiI CCGCTC 1 cut(s) 422
MboI GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
MboII GAAGA 3 cut(s) 380, 407, 886
MhlI GDGCHC 4 cut(s) 37, 388, 681, 919
MlsI TGGCCA 1 cut(s) 364
MluCI AATT 4 cut(s) 55, 299, 481, 995
MluNI TGGCCA 1 cut(s) 364
MlyI GAGTC 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 971
Mox20I TGGCCA 1 cut(s) 364
Mph1103I ATGCAT 3 cut(s) 564, 601, 845
MroI TCCGGA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 364
MseI TTAA 5 cut(s) 162, 252, 662, 1065, 1105
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 1 cut(s) 364
MspI CCGG 3 cut(s) 308, 341, 681
MspR9I CCNGG 3 cut(s) 308, 681, 882
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 5 cut(s) 509, 518, 550, 559, 701
NciI CCSGG 2 cut(s) 308, 681
NcoI CCATGG 1 cut(s) 781
NdeII GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
NlaIII CATG 9 cut(s) 52, 77, 172, 553, 562, 566, 785, 793, 847
NlaIV GGNNCC 2 cut(s) 779, 787
NmeAIII GCCGAG 1 cut(s) 700
NmuCI GTSAC 2 cut(s) 860, 980
NsiI ATGCAT 3 cut(s) 564, 601, 845
NspI RCATGY 3 cut(s) 553, 566, 847
PaeI GCATGC 1 cut(s) 553
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 348
PciSI GCTCTTC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 269, 821
PflFI GACNNNGTC 1 cut(s) 968
PkrI GCNGC 6 cut(s) 238, 421, 514, 616, 619, 1081
PleI GAGTC 1 cut(s) 429
PmaCI CACGTG 1 cut(s) 177
PmlI CACGTG 1 cut(s) 177
PpsI GAGTC 1 cut(s) 429
Ppu21I YACGTR 2 cut(s) 177, 896
Psp6I CCWGG 1 cut(s) 880
PspCI CACGTG 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 980
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 2 cut(s) 779, 787
PspPI GGNCC 2 cut(s) 343, 944
PsrI GAACNNNNNNTAC 2 cut(s) 267, 299
PsyI GACNNNGTC 1 cut(s) 968
RsaI GTAC 4 cut(s) 380, 635, 808, 894
RsaNI GTAC 4 cut(s) 379, 634, 807, 893
RseI CAYNNNNRTG 1 cut(s) 563
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 5 cut(s) 162, 252, 662, 1065, 1105
SatI GCNGC 6 cut(s) 237, 420, 513, 615, 618, 1080
Sau3AI GATC 6 cut(s) 105, 291, 765, 802, 955, 1086
Sau96I GGNCC 2 cut(s) 343, 944
ScaI AGTACT 1 cut(s) 635
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 3 cut(s) 308, 681, 882
SduI GDGCHC 4 cut(s) 37, 388, 681, 919
SfaNI GCATC 3 cut(s) 339, 586, 783
SfcI CTRYAG 1 cut(s) 1051
SinI GGWCC 2 cut(s) 343, 944
SmiMI CAYNNNNRTG 1 cut(s) 563
SphI GCATGC 1 cut(s) 553
Sse9I AATT 4 cut(s) 55, 299, 481, 995
SsiI CCGC 7 cut(s) 328, 420, 521, 536, 579, 617, 695
SspI AATATT 1 cut(s) 80
SspMI CTAG 2 cut(s) 86, 815
StyD4I CCNGG 3 cut(s) 306, 679, 880
StyI CCWWGG 1 cut(s) 781
TaaI ACNGT 3 cut(s) 383, 857, 929
TaiI ACGT 4 cut(s) 179, 898, 953, 1046
TaqI TCGA 2 cut(s) 101, 932
TasI AATT 4 cut(s) 55, 299, 481, 995
TatI WGTACW 1 cut(s) 633
TauI GCSGC 2 cut(s) 422, 620
TfiI GAWTC 2 cut(s) 269, 821
Tru1I TTAA 5 cut(s) 162, 252, 662, 1065, 1105
Tru9I TTAA 5 cut(s) 162, 252, 662, 1065, 1105
TscAI CASTG 1 cut(s) 862
TseFI GTSAC 2 cut(s) 860, 980
TseI GCWGC 4 cut(s) 236, 512, 614, 1079
Tsp45I GTSAC 2 cut(s) 860, 980
TspDTI ATGAA 3 cut(s) 90, 275, 449
TspRI CASTG 1 cut(s) 862
Tth111I GACNNNGTC 1 cut(s) 968
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 343, 944
XceI RCATGY 3 cut(s) 553, 566, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 796
XspI CTAG 2 cut(s) 86, 815
ZrmI AGTACT 1 cut(s) 635
Zsp2I ATGCAT 3 cut(s) 564, 601, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.