Rmu_sc0002489.1_g000031

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002489.1
OG0000734
Physical Location & Seq
Reverse (-)
100392 .. 101670
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002489.1_g000031.1.cds

Sequence Viewer

Length: 1185 bp
atggatggaaacagcgttgaaccccgactaagtgcaccagataaggtcatgagcaattacgggctgagtactcatgaatatttcctagagaaaatcatttcgactatcaagaagcagcaaagtgaggaagcattttacgtgctggatttaggtgttgtcattaacctcatggacacctggaaacgtaaccttccgatggtccaacccttctactctgttaaatgcaatccacacccggatctcctcgccaccttggttgctcatggctcaagtttcgactgtgcaagtcggtctgagattgaatccattttggctctgggagtttctccagattgcattatctatcctaatccttgtaaagcttgctctcacatcaagtatgctgccgcactccggacgagagtgcatgggagcaggtggccaatgagttccaagtacggtgctcttcccgaagaagtgcctaagctcctccaagccgctcaaactaaaggactcaaagttcttggggtatcatttcatatagggagtaactcccacaattatcaagcatataaaacagcaatacaggcagtcaaggcggtttttcaggaggcggataggctctgcatgcctcccatgcatgtgttgaacattggcggtggcttcgtgtcccatgcattgtgctttgtagctgcggcaacagccgtgaaaactgccgtggaaaagtacttttcaaaagtggagcgacaaaacttaacgatgatggccgagcccggtcggttctttgcggagacggctttcacgcttgccaccaacatcattgggaagcgagtgagaggggaggtcagacattactggatcaacgaagggttccatggctccatgatgcgcgtggatcgtacagcgctagttgaatcgtgcatttctctgaaatgcatttccaataatagtagtgacgacaatgagaagaacccaggcattatggtaagtggtaaaggtgtcggtggtgctcgcacttacagttcgattgtgtttggtccgacgtgtgatcccattgacaaggtcttggagggtcaccagctaccagaattggaggtgaatgattggctggtgtttcagaatatgggtcatacgtcatcctgtagcaacaagtttaatggttttggcacagccaaggaacaattcttcggttcacccctagggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

394

Amino Acids

43.29

Weight (kDa)

8.22

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 405
Acc36I ACCTGC 1 cut(s) 405
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 1 cut(s) 870
AccIII TCCGGA 1 cut(s) 393
AciI CCGC 7 cut(s) 387, 477, 578, 593, 636, 674, 767
AclWI GGATC 4 cut(s) 246, 845, 882, 1022
AcoI YGGCCR 2 cut(s) 419, 744
AfaI GTAC 4 cut(s) 70, 437, 707, 880
AfeI AGCGCT 1 cut(s) 885
AfiI CCNNNNNNNGG 2 cut(s) 196, 393
AflIII ACRYGT 1 cut(s) 1022
AgsI TTSAA 5 cut(s) 20, 302, 628, 714, 893
AjiI CACGTC 1 cut(s) 1023
AjnI CCWGG 2 cut(s) 176, 952
AjuI GAANNNNNNNTTGG 2 cut(s) 1145, 1177
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 4 cut(s) 362, 466, 671, 1060
AluI AGCT 4 cut(s) 362, 466, 671, 1060
Alw21I GWGCWC 3 cut(s) 37, 445, 991
Alw26I GTCTC 1 cut(s) 764
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 4 cut(s) 246, 845, 882, 1022
Aor13HI TCCGGA 1 cut(s) 393
Aor51HI AGCGCT 1 cut(s) 885
AoxI GGCC 2 cut(s) 419, 744
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 115, 383, 671
AspA2I CCTAGG 1 cut(s) 1177
AspLEI GCGC 2 cut(s) 870, 886
AspS9I GGNCC 2 cut(s) 199, 1016
AsuC2I CCSGG 2 cut(s) 236, 753
AsuHPI GGTGA 3 cut(s) 1046, 1087, 1164
AvaII GGWCC 2 cut(s) 199, 1016
AvrII CCTAGG 1 cut(s) 1177
BaeGI GKGCMC 1 cut(s) 37
BalI TGGCCA 1 cut(s) 421
BanII GRGCYC 1 cut(s) 753
Bbv12I GWGCWC 3 cut(s) 37, 445, 991
BbvI GCAGC 3 cut(s) 127, 370, 658
BccI CCATC 2 cut(s) 190, 736
BceAI ACGGC 3 cut(s) 668, 680, 789
BciT130I CCWGG 2 cut(s) 178, 954
BcnI CCSGG 2 cut(s) 236, 753
BcoDI GTCTC 1 cut(s) 764
BfaI CTAG 3 cut(s) 86, 887, 1178
BfmI CTRYAG 1 cut(s) 1120
BfoI RGCGCY 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 405
BisI GCNGC 6 cut(s) 116, 384, 387, 477, 672, 675
BlnI CCTAGG 1 cut(s) 1177
BlsI GCNGC 6 cut(s) 117, 385, 388, 478, 673, 676
BmcAI AGTACT 2 cut(s) 70, 707
Bme1390I CCNGG 4 cut(s) 178, 236, 753, 954
Bme18I GGWCC 2 cut(s) 199, 1016
BmgBI CACGTC 1 cut(s) 1023
BmgT120I GGNCC 2 cut(s) 199, 1016
BmiI GGNNCC 2 cut(s) 851, 859
BmrFI CCNGG 4 cut(s) 178, 236, 753, 954
BmsI GCATC 1 cut(s) 855
BpmI CTGGAG 1 cut(s) 312
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 253
BpuMI CCSGG 2 cut(s) 236, 753
BsaAI YACGTR 1 cut(s) 139
BsaJI CCNNGG 6 cut(s) 252, 696, 853, 952, 1152, 1177
BsaWI WCCGGW 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 393
Bse1I ACTGG 1 cut(s) 839
BseAI TCCGGA 1 cut(s) 393
BseBI CCWGG 2 cut(s) 178, 954
BseDI CCNNGG 6 cut(s) 252, 696, 853, 952, 1152, 1177
BseGI GGATG 2 cut(s) 10, 1115
BseLI CCNNNNNNNGG 2 cut(s) 196, 393
BseMII CTCAG 2 cut(s) 56, 285
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 2 cut(s) 233, 458
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 3 cut(s) 127, 370, 658
Bsh1236I CGCG 1 cut(s) 870
Bsh1285I CGRYCG 1 cut(s) 757
BshFI GGCC 2 cut(s) 421, 746
BsiEI CGRYCG 1 cut(s) 757
BsiHKAI GWGCWC 3 cut(s) 37, 445, 991
BsiSI CCGG 3 cut(s) 236, 394, 753
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 2 cut(s) 196, 393
BsmAI GTCTC 1 cut(s) 764
BsmBI CGTCTC 1 cut(s) 764
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 2 cut(s) 421, 746
Bsp1286I GDGCHC 4 cut(s) 37, 445, 753, 991
Bsp13I TCCGGA 1 cut(s) 393
Bsp143I GATC 4 cut(s) 238, 837, 874, 1027
Bsp19I CCATGG 1 cut(s) 853
BspACI CCGC 7 cut(s) 387, 477, 578, 593, 636, 674, 767
BspANI GGCC 2 cut(s) 421, 746
BspCNI CTCAG 2 cut(s) 57, 286
BspEI TCCGGA 1 cut(s) 393
BspFNI CGCG 1 cut(s) 870
BspHI TCATGA 2 cut(s) 48, 73
BspLI GGNNCC 2 cut(s) 851, 859
BspMI ACCTGC 1 cut(s) 405
BspPI GGATC 4 cut(s) 246, 845, 882, 1022
BspQI GCTCTTC 1 cut(s) 450
BsrBI CCGCTC 1 cut(s) 479
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 6 cut(s) 252, 696, 853, 952, 1152, 1177
BssMI GATC 4 cut(s) 238, 837, 874, 1027
BssT1I CCWWGG 4 cut(s) 252, 853, 1152, 1177
Bst2UI CCWGG 2 cut(s) 178, 954
Bst4CI ACNGT 3 cut(s) 281, 440, 1001
Bst6I CTCTTC 1 cut(s) 450
BstBAI YACGTR 1 cut(s) 139
BstC8I GCNNGC 4 cut(s) 364, 608, 786, 991
BstDEI CTNAG 4 cut(s) 29, 65, 294, 462
BstDSI CCRYGG 2 cut(s) 696, 853
BstEII GGTNACC 1 cut(s) 1052
BstF5I GGATG 2 cut(s) 10, 1115
BstFNI CGCG 1 cut(s) 870
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 2 cut(s) 870, 886
BstKTI GATC 4 cut(s) 241, 840, 877, 1030
BstMAI GTCTC 1 cut(s) 764
BstMBI GATC 4 cut(s) 238, 837, 874, 1027
BstMCI CGRYCG 1 cut(s) 757
BstMWI GCNNNNNNNGC 6 cut(s) 566, 575, 607, 616, 680, 773
BstNI CCWGG 2 cut(s) 178, 954
BstNSI RCATGY 2 cut(s) 610, 623
BstPI GGTNACC 1 cut(s) 1052
BstSCI CCNGG 4 cut(s) 176, 234, 751, 952
BstSFI CTRYAG 1 cut(s) 1120
BstSLI GKGCMC 1 cut(s) 37
BstUI CGCG 1 cut(s) 870
BstV1I GCAGC 3 cut(s) 127, 370, 658
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 421, 746
BtgI CCRYGG 2 cut(s) 696, 853
BtrI CACGTC 1 cut(s) 1023
BtsCI GGATG 2 cut(s) 10, 1115
BveI ACCTGC 1 cut(s) 405
Cac8I GCNNGC 4 cut(s) 364, 608, 786, 991
CciI TCATGA 2 cut(s) 48, 73
CfoI GCGC 2 cut(s) 870, 886
Cfr13I GGNCC 2 cut(s) 199, 1016
Csp6I GTAC 4 cut(s) 69, 436, 706, 879
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviQI GTAC 4 cut(s) 69, 436, 706, 879
DdeI CTNAG 4 cut(s) 29, 65, 294, 462
DpnI GATC 4 cut(s) 240, 839, 876, 1029
DpnII GATC 4 cut(s) 238, 837, 874, 1027
EaeI YGGCCR 2 cut(s) 419, 744
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 608
Eco130I CCWWGG 4 cut(s) 252, 853, 1152, 1177
Eco24I GRGCYC 1 cut(s) 753
Eco47I GGWCC 2 cut(s) 199, 1016
Eco47III AGCGCT 1 cut(s) 885
Eco91I GGTNACC 1 cut(s) 1052
EcoO65I GGTNACC 1 cut(s) 1052
EcoRII CCWGG 2 cut(s) 176, 952
EcoT14I CCWWGG 4 cut(s) 252, 853, 1152, 1177
EcoT22I ATGCAT 3 cut(s) 621, 658, 917
EcoT38I GRGCYC 1 cut(s) 753
ErhI CCWWGG 4 cut(s) 252, 853, 1152, 1177
Esp3I CGTCTC 1 cut(s) 764
FaqI GGGAC 1 cut(s) 634
Fnu4HI GCNGC 6 cut(s) 116, 384, 387, 477, 672, 675
FokI GGATG 2 cut(s) 17, 1102
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 6 cut(s) 116, 384, 387, 477, 672, 675
FspBI CTAG 3 cut(s) 86, 887, 1178
GlaI GCGC 2 cut(s) 869, 885
GluI GCNGC 6 cut(s) 116, 384, 387, 477, 672, 675
GsuI CTGGAG 1 cut(s) 312
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 2 cut(s) 421, 746
HapII CCGG 3 cut(s) 236, 394, 753
HhaI GCGC 2 cut(s) 870, 886
Hin6I GCGC 2 cut(s) 868, 884
HinP1I GCGC 2 cut(s) 868, 884
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 3 cut(s) 302, 492, 893
HpaII CCGG 3 cut(s) 236, 394, 753
HphI GGTGA 3 cut(s) 1046, 1087, 1164
Hpy166II GTNNAC 2 cut(s) 35, 1172
Hpy188I TCNGA 6 cut(s) 195, 295, 827, 909, 1020, 1098
Hpy188III TCNNGA 7 cut(s) 49, 74, 109, 329, 394, 449, 587
Hpy8I GTNNAC 2 cut(s) 35, 1172
Hpy99I CGWCG 1 cut(s) 1024
HpyAV CCTTC 3 cut(s) 200, 217, 839
HpyCH4III ACNGT 3 cut(s) 281, 440, 1001
HpyCH4IV ACGT 4 cut(s) 138, 184, 1022, 1112
HpyF10VI GCNNNNNNNGC 6 cut(s) 566, 575, 607, 616, 680, 773
HpyF3I CTNAG 4 cut(s) 29, 65, 294, 462
HpySE526I ACGT 4 cut(s) 138, 184, 1022, 1112
HspAI GCGC 2 cut(s) 868, 884
Kpn2I TCCGGA 1 cut(s) 393
Kzo9I GATC 4 cut(s) 238, 837, 874, 1027
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 411, 471, 721, 863
Lsp1109I GCAGC 3 cut(s) 127, 370, 658
LweI GCATC 1 cut(s) 855
MaeI CTAG 3 cut(s) 86, 887, 1178
MaeII ACGT 4 cut(s) 138, 184, 1022, 1112
MaeIII GTNAC 4 cut(s) 185, 527, 932, 1052
MalI GATC 4 cut(s) 240, 839, 876, 1029
MbiI CCGCTC 1 cut(s) 479
MboI GATC 4 cut(s) 238, 837, 874, 1027
MboII GAAGA 4 cut(s) 437, 464, 958, 1156
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 4 cut(s) 37, 445, 753, 991
MlsI TGGCCA 1 cut(s) 421
MluCI AATT 4 cut(s) 55, 538, 1067, 1160
MluNI TGGCCA 1 cut(s) 421
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 2 cut(s) 226, 1043
Mox20I TGGCCA 1 cut(s) 421
Mph1103I ATGCAT 3 cut(s) 621, 658, 917
MroI TCCGGA 1 cut(s) 393
MscI TGGCCA 1 cut(s) 421
MseI TTAA 4 cut(s) 162, 219, 734, 1134
MslI CAYNNNNRTG 1 cut(s) 620
Msp20I TGGCCA 1 cut(s) 421
MspI CCGG 3 cut(s) 236, 394, 753
MspR9I CCNGG 4 cut(s) 178, 236, 753, 954
MvaI CCWGG 2 cut(s) 178, 954
MvnI CGCG 1 cut(s) 870
MwoI GCNNNNNNNGC 6 cut(s) 566, 575, 607, 616, 680, 773
NciI CCSGG 2 cut(s) 236, 753
NcoI CCATGG 1 cut(s) 853
NdeII GATC 4 cut(s) 238, 837, 874, 1027
NlaIV GGNNCC 2 cut(s) 851, 859
NmeAIII GCCGAG 1 cut(s) 772
NmuCI GTSAC 2 cut(s) 932, 1052
NsiI ATGCAT 3 cut(s) 621, 658, 917
NspI RCATGY 2 cut(s) 610, 623
PaeI GCATGC 1 cut(s) 610
PagI TCATGA 2 cut(s) 48, 73
PaqCI CACCTGC 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 450
PfeI GAWTC 2 cut(s) 302, 893
PflFI GACNNNGTC 1 cut(s) 1040
PkrI GCNGC 6 cut(s) 117, 385, 388, 478, 673, 676
PleI GAGTC 1 cut(s) 486
PpsI GAGTC 1 cut(s) 486
Ppu21I YACGTR 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 176, 952
PspEI GGTNACC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 176, 952
PspN4I GGNNCC 2 cut(s) 851, 859
PspPI GGNCC 2 cut(s) 199, 1016
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 1040
RsaI GTAC 4 cut(s) 70, 437, 707, 880
RsaNI GTAC 4 cut(s) 69, 436, 706, 879
RseI CAYNNNNRTG 1 cut(s) 620
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 4 cut(s) 162, 219, 734, 1134
SatI GCNGC 6 cut(s) 116, 384, 387, 477, 672, 675
Sau3AI GATC 4 cut(s) 238, 837, 874, 1027
Sau96I GGNCC 2 cut(s) 199, 1016
ScaI AGTACT 2 cut(s) 70, 707
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 4 cut(s) 178, 236, 753, 954
SduI GDGCHC 4 cut(s) 37, 445, 753, 991
SfaNI GCATC 1 cut(s) 855
SfcI CTRYAG 1 cut(s) 1120
SinI GGWCC 2 cut(s) 199, 1016
SmiMI CAYNNNNRTG 1 cut(s) 620
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
SphI GCATGC 1 cut(s) 610
Sse9I AATT 4 cut(s) 55, 538, 1067, 1160
SsiI CCGC 7 cut(s) 387, 477, 578, 593, 636, 674, 767
SspI AATATT 1 cut(s) 80
SspMI CTAG 3 cut(s) 86, 887, 1178
StyD4I CCNGG 4 cut(s) 176, 234, 751, 952
StyI CCWWGG 4 cut(s) 252, 853, 1152, 1177
TaaI ACNGT 3 cut(s) 281, 440, 1001
TaiI ACGT 4 cut(s) 141, 187, 1025, 1115
TaqI TCGA 3 cut(s) 101, 276, 1004
TaqII GACCGA 1 cut(s) 279
TasI AATT 4 cut(s) 55, 538, 1067, 1160
TatI WGTACW 2 cut(s) 68, 705
TauI GCSGC 3 cut(s) 389, 479, 677
TfiI GAWTC 2 cut(s) 302, 893
Tru1I TTAA 4 cut(s) 162, 219, 734, 1134
Tru9I TTAA 4 cut(s) 162, 219, 734, 1134
TseFI GTSAC 2 cut(s) 932, 1052
TseI GCWGC 3 cut(s) 115, 383, 671
Tsp45I GTSAC 2 cut(s) 932, 1052
TspDTI ATGAA 2 cut(s) 90, 506
Tth111I GACNNNGTC 1 cut(s) 1040
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 199, 1016
XceI RCATGY 2 cut(s) 610, 623
XcmI CCANNNNNNNNNTGG 2 cut(s) 313, 868
XmaJI CCTAGG 1 cut(s) 1177
XspI CTAG 3 cut(s) 86, 887, 1178
ZrmI AGTACT 2 cut(s) 70, 707
Zsp2I ATGCAT 3 cut(s) 621, 658, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.