Rmu_co8388845.1_g000001

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8388845.1
OG0000734
Physical Location & Seq
Reverse (-)
2 .. 986
985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8388845.1_g000001.1.cds

Sequence Viewer

Length: 985 bp
atggacacatggaaacgtaaccttccaatggtccaatctttctacgccgtcaagtgcaacccacacccggatctcctcgccaccttggcggctcaaggttcaagtttcgactgtggaagtccgtctgagattgagtccattttagctcttggagtttctccggatcgcatcatctatgctaatccttgcaaagctagctctcacatccagtacgctgctgaagttggcgttaacgtaaccacttttgactcggtagatgagattgaaaagatccgaaaatggcacccgaaatgttctttactgatccgcatcaaagctcctgacgagagtggatgcagcttcccactgagttccaagttcggagctctccctgaagaagtgtctttgctcctccaagccgctcaaactgcaggactcagagtaactggggtttcatttcacataggcagtaagtcctacaattttcaagcatacaaaacagccatagaggcagctaagaaggttttccaggaggcggctaggctctgtatgcctcccatgcatgtgttggacattggcggtggcttcgtgtccgagccatcgttctttgaagctgcggcagcagtcgtgaaaacctctgtggagacctatttttcagaggaggagcgacgcagcttgaaggtgatagccgagccaggtcggttttttgcagagaccgctttcacgcttgtcaccaacatcatcgggaagcgtgtgagaggggcggtcagacaatactggatcaacgaagggttttttgggtccatgatgtgtgcggaccctaaaaccctacttgaatcctgcattgctctgaaatgcatgtacaataacagtgatggcatcgagaagaatccagtcttgatggtctgtggcaaagctactggctctgctcgcacttacagttcgactgtgtttggtccgacgtgtgattcggctgacaaggtgttggagggtgaccagttaccag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

328

Amino Acids

35.69

Weight (kDa)

6.25

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 9 cut(s) 89, 307, 399, 515, 558, 596, 696, 743, 794
AclWI GGATC 5 cut(s) 78, 171, 265, 298, 767
AcuI CTGAAG 2 cut(s) 240, 393
AfaI GTAC 2 cut(s) 212, 842
AfiI CCNNNNNNNGG 3 cut(s) 28, 67, 514
AflIII ACRYGT 1 cut(s) 941
AgsI TTSAA 6 cut(s) 102, 266, 467, 590, 658, 815
AjiI CACGTC 1 cut(s) 942
AjnI CCWGG 2 cut(s) 507, 673
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 2 cut(s) 617, 686
AlwI GGATC 5 cut(s) 78, 171, 265, 298, 767
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 6 cut(s) 215, 336, 491, 593, 599, 651
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
Asp700I GAANNNNTTC 1 cut(s) 503
AspS9I GGNCC 4 cut(s) 31, 780, 796, 935
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 673, 703, 983
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 4 cut(s) 31, 780, 796, 935
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 367
Bbv12I GWGCWC 1 cut(s) 367
BbvI GCAGC 6 cut(s) 202, 348, 503, 580, 611, 663
BccI CCATC 3 cut(s) 586, 848, 874
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 509, 675
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 617, 686
BfaI CTAG 2 cut(s) 195, 519
BfmI CTRYAG 1 cut(s) 408
BglI GCCNNNNNGGC 2 cut(s) 86, 488
Bme1390I CCNGG 3 cut(s) 68, 509, 675
Bme18I GGWCC 4 cut(s) 31, 780, 796, 935
BmgBI CACGTC 1 cut(s) 942
BmgT120I GGNCC 4 cut(s) 31, 780, 796, 935
BmiI GGNNCC 3 cut(s) 284, 781, 798
BmrFI CCNGG 3 cut(s) 68, 509, 675
BmrI ACTGGG 1 cut(s) 435
BmsI GCATC 4 cut(s) 177, 318, 323, 867
BmtI GCTAGC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 308
BsaI GGTCTC 2 cut(s) 617, 686
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 67, 514
Bse1I ACTGG 6 cut(s) 208, 430, 761, 872, 904, 976
Bse3DI GCAATG 1 cut(s) 822
Bse8I GATNNNNATC 1 cut(s) 308
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 509, 675
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 204, 338
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 3 cut(s) 28, 67, 514
BseMI GCAATG 1 cut(s) 822
BseMII CTCAG 3 cut(s) 117, 338, 430
BseNI ACTGG 6 cut(s) 208, 430, 761, 872, 904, 976
BseRI GAGGAG 4 cut(s) 65, 380, 653, 656
BseXI GCAGC 6 cut(s) 202, 348, 503, 580, 611, 663
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 367
BsiSI CCGG 2 cut(s) 68, 161
BslI CCNNNNNNNGG 3 cut(s) 28, 67, 514
BsmAI GTCTC 2 cut(s) 617, 686
Bso31I GGTCTC 2 cut(s) 617, 686
Bsp1286I GDGCHC 1 cut(s) 367
Bsp13I TCCGGA 1 cut(s) 160
Bsp1407I TGTACA 1 cut(s) 840
Bsp143I GATC 5 cut(s) 70, 163, 270, 303, 759
BspACI CCGC 9 cut(s) 89, 307, 399, 515, 558, 596, 696, 743, 794
BspCNI CTCAG 3 cut(s) 118, 339, 429
BspEI TCCGGA 1 cut(s) 160
BspLI GGNNCC 3 cut(s) 284, 781, 798
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 5 cut(s) 78, 171, 265, 298, 767
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 2 cut(s) 617, 686
BsrBI CCGCTC 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 822
BsrGI TGTACA 1 cut(s) 840
BsrI ACTGG 6 cut(s) 208, 430, 761, 872, 904, 976
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 5 cut(s) 70, 163, 270, 303, 759
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 509, 675
Bst4CI ACNGT 4 cut(s) 113, 851, 920, 928
BstAUI TGTACA 1 cut(s) 840
BstC8I GCNNGC 2 cut(s) 196, 910
BstDEI CTNAG 4 cut(s) 126, 347, 416, 495
BstEII GGTNACC 1 cut(s) 971
BstF5I GGATG 2 cut(s) 204, 338
BstKTI GATC 5 cut(s) 73, 166, 273, 306, 762
BstMAI GTCTC 2 cut(s) 617, 686
BstMBI GATC 5 cut(s) 70, 163, 270, 303, 759
BstMWI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
BstNI CCWGG 2 cut(s) 509, 675
BstNSI RCATGY 2 cut(s) 545, 841
BstPI GGTNACC 1 cut(s) 971
BstSCI CCNGG 3 cut(s) 66, 507, 673
BstSFI CTRYAG 1 cut(s) 408
BstV1I GCAGC 6 cut(s) 202, 348, 503, 580, 611, 663
BstX2I RGATCY 2 cut(s) 70, 270
BstYI RGATCY 2 cut(s) 70, 270
BtrI CACGTC 1 cut(s) 942
BtsCI GGATG 2 cut(s) 204, 338
BtsIMutI CAGTG 2 cut(s) 344, 856
Cac8I GCNNGC 2 cut(s) 196, 910
Cfr13I GGNCC 4 cut(s) 31, 780, 796, 935
CseI GACGC 1 cut(s) 657
Csp6I GTAC 2 cut(s) 211, 841
CviAII CATG 5 cut(s) 9, 538, 542, 784, 838
CviQI GTAC 2 cut(s) 211, 841
DdeI CTNAG 4 cut(s) 126, 347, 416, 495
DpnI GATC 5 cut(s) 72, 165, 272, 305, 761
DpnII GATC 5 cut(s) 70, 163, 270, 303, 759
Ecl136II GAGCTC 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 367
Eco31I GGTCTC 2 cut(s) 617, 686
Eco47I GGWCC 4 cut(s) 31, 780, 796, 935
Eco53kI GAGCTC 1 cut(s) 365
Eco57I CTGAAG 2 cut(s) 240, 393
Eco91I GGTNACC 1 cut(s) 971
EcoICRI GAGCTC 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 507, 673
EcoT14I CCWWGG 1 cut(s) 84
EcoT22I ATGCAT 2 cut(s) 543, 839
EcoT38I GRGCYC 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 5 cut(s) 12, 541, 545, 787, 841
FatI CATG 5 cut(s) 8, 537, 541, 783, 837
FokI GGATG 2 cut(s) 191, 345
FriOI GRGCYC 1 cut(s) 367
FspBI CTAG 2 cut(s) 195, 519
HapII CCGG 2 cut(s) 68, 161
HgaI GACGC 1 cut(s) 657
Hin1II CATG 5 cut(s) 12, 541, 545, 787, 841
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 6 cut(s) 134, 248, 414, 815, 868, 947
HpaI GTTAAC 1 cut(s) 232
HpaII CCGG 2 cut(s) 68, 161
HphI GGTGA 3 cut(s) 673, 703, 983
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 9 cut(s) 127, 275, 362, 419, 574, 637, 749, 831, 939
Hpy188III TCNNGA 6 cut(s) 161, 320, 607, 724, 862, 877
Hpy8I GTNNAC 1 cut(s) 232
Hpy99I CGWCG 2 cut(s) 651, 943
HpyAV CCTTC 4 cut(s) 32, 493, 652, 761
HpyCH4III ACNGT 4 cut(s) 113, 851, 920, 928
HpyCH4IV ACGT 3 cut(s) 16, 234, 941
HpyCH4V TGCA 8 cut(s) 57, 189, 336, 410, 541, 689, 822, 837
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
HpyF3I CTNAG 4 cut(s) 126, 347, 416, 495
HpySE526I ACGT 3 cut(s) 16, 234, 941
Hsp92II CATG 5 cut(s) 12, 541, 545, 787, 841
Kpn2I TCCGGA 1 cut(s) 160
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 5 cut(s) 70, 163, 270, 303, 759
LmnI GCTCC 4 cut(s) 322, 362, 393, 643
Lsp1109I GCAGC 6 cut(s) 202, 348, 503, 580, 611, 663
LweI GCATC 4 cut(s) 177, 318, 323, 867
MaeI CTAG 2 cut(s) 195, 519
MaeII ACGT 3 cut(s) 16, 234, 941
MaeIII GTNAC 6 cut(s) 17, 235, 421, 709, 971, 978
MalI GATC 5 cut(s) 72, 165, 272, 305, 761
MbiI CCGCTC 1 cut(s) 401
MboI GATC 5 cut(s) 70, 163, 270, 303, 759
MboII GAAGA 2 cut(s) 386, 877
MflI RGATCY 2 cut(s) 70, 270
MhlI GDGCHC 1 cut(s) 367
MluCI AATT 1 cut(s) 460
MlyI GAGTC 3 cut(s) 143, 242, 408
MmeI TCCRAC 3 cut(s) 528, 945, 962
Mph1103I ATGCAT 2 cut(s) 543, 839
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 503
MseI TTAA 1 cut(s) 231
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 2 cut(s) 68, 161
MspR9I CCNGG 3 cut(s) 68, 509, 675
MvaI CCWGG 2 cut(s) 509, 675
MwoI GCNNNNNNNGC 9 cut(s) 86, 195, 407, 488, 529, 538, 599, 695, 909
NciI CCSGG 1 cut(s) 68
NdeII GATC 5 cut(s) 70, 163, 270, 303, 759
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 5 cut(s) 12, 541, 545, 787, 841
NlaIV GGNNCC 3 cut(s) 284, 781, 798
NmeAIII GCCGAG 1 cut(s) 694
NmuCI GTSAC 2 cut(s) 709, 971
NsiI ATGCAT 2 cut(s) 543, 839
NspI RCATGY 2 cut(s) 545, 841
PdmI GAANNNNTTC 1 cut(s) 503
PfeI GAWTC 3 cut(s) 815, 868, 947
PfoI TCCNGGA 1 cut(s) 507
PleI GAGTC 3 cut(s) 142, 242, 408
PpsI GAGTC 3 cut(s) 142, 242, 408
Psp124BI GAGCTC 1 cut(s) 367
Psp6I CCWGG 2 cut(s) 507, 673
PspEI GGTNACC 1 cut(s) 971
PspGI CCWGG 2 cut(s) 507, 673
PspN4I GGNNCC 3 cut(s) 284, 781, 798
PspPI GGNCC 4 cut(s) 31, 780, 796, 935
PstI CTGCAG 1 cut(s) 412
PsuI RGATCY 2 cut(s) 70, 270
RsaI GTAC 2 cut(s) 212, 842
RsaNI GTAC 2 cut(s) 211, 841
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 1 cut(s) 367
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 5 cut(s) 70, 163, 270, 303, 759
Sau96I GGNCC 4 cut(s) 31, 780, 796, 935
SchI GAGTC 3 cut(s) 143, 242, 408
ScrFI CCNGG 3 cut(s) 68, 509, 675
SduI GDGCHC 1 cut(s) 367
SfaNI GCATC 4 cut(s) 177, 318, 323, 867
SfcI CTRYAG 1 cut(s) 408
SinI GGWCC 4 cut(s) 31, 780, 796, 935
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 1 cut(s) 460
SsiI CCGC 9 cut(s) 89, 307, 399, 515, 558, 596, 696, 743, 794
SspMI CTAG 2 cut(s) 195, 519
SstI GAGCTC 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 66, 507, 673
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 4 cut(s) 113, 851, 920, 928
TaiI ACGT 3 cut(s) 19, 237, 944
TaqI TCGA 3 cut(s) 108, 861, 923
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 840
TauI GCSGC 4 cut(s) 92, 401, 518, 599
TfiI GAWTC 3 cut(s) 815, 868, 947
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 351, 856
TseFI GTSAC 2 cut(s) 709, 971
TseI GCWGC 6 cut(s) 215, 336, 491, 593, 599, 651
Tsp45I GTSAC 2 cut(s) 709, 971
TspDTI ATGAA 1 cut(s) 423
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 351, 856
VpaK11BI GGWCC 4 cut(s) 31, 780, 796, 935
XceI RCATGY 2 cut(s) 545, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
XmnI GAANNNNTTC 1 cut(s) 503
XspI CTAG 2 cut(s) 195, 519
Zsp2I ATGCAT 2 cut(s) 543, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.