Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

25537396 .. 25538292

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g34890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAGGCATGAAGAGGAAGGCAGAAGAGAGCTTGGGTTCAGGCCACAAGTGGATGAGGGGAAGCAAGATCAGCGAGGGAGGCTTCGGCTCTGTCTTCGTCGCTTTCACCAAGATACCCTACATCCATAGCCACCACATGCCTGAGGCCATGGCCGTGAAATCTGCAAAGATGAAGGACTCGGGTTCTATTCAATACGAGCTCAAGGTTTACAACGACAGGAAGAATCGCGGCGGTCTTTGCCCTTTCATTATCGACCATTACGGTGAAGAGGTGACAACGAGCAGTAAGGGCGAAGAGGTTTACAACTTGGCGTTGGAAGTCGCGTGGGGAAGTCTTGCAAGGCTGATAAAGAATGTGGGTGGTGGGTTGCCTCAACGCGATGTGCGAAGGTATACCCGTGACATTCTTCAAGGGATTGCATACATGCACAAGTGTGGTTACGTCCACTGTGACTTGAAGCCAGAGAATGTTCTTCTTGTGGAAAATGAAGACGAGGACGTCCCTAGGAGAATAATTGCTAAAGTGGCAGACTTGGGATTGGCCAAGAAGAAGGACAAGGTTCATGAAAGGTGGAGAGGTACACCCATGTACTTGGCTCCTGAGACTCTACGGTTCAATGAACAAGAGGAGCCAAGTGATATTTGGGCCTTGGGGTGCATAGTTCTTGAGATGATCACCGGAGAGCCCGCTCGGAACCACTATTACGATGAAGAGAGTAACAAGATCGTTGTTGTTGACGGAGTTGTGCCTAAAATCCCTGAAGATGAAATCTCAGGTGTTGCGAAGGATTTTCTAGGTTGTTGTCTAGATAATTATATGGATAGGCCCACCGCCAAAAAGCTGCTATCTCATCCCTTTGTAGCCAAAAAGTATTTACATATTGATTTCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

299

Amino Acids

33.63

Weight (kDa)

6.84

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 288	3.1e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	22 - 284	1.3e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	500
AatII	GACGTC	1 cut(s)	504
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	395
AccII	CGCG	3 cut(s)	231, 326, 381
AciI	CCGC	4 cut(s)	231, 234, 690, 834
AcoI	YGGCCR	2 cut(s)	153, 543
AcuI	CTGAAG	1 cut(s)	783
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	2 cut(s)	583, 593
AgsI	TTSAA	4 cut(s)	194, 413, 460, 619
AleI	CACNNNNGTG	1 cut(s)	435
AluBI	AGCT	3 cut(s)	33, 202, 844
AluI	AGCT	3 cut(s)	33, 202, 844
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	6 cut(s)	43, 147, 153, 543, 648, 827
ApeKI	GCWGC	1 cut(s)	844
AspA2I	CCTAGG	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	648, 828
AsuHPI	GGTGA	5 cut(s)	100, 278, 286, 670, 883
AvaI	CYCGRG	1 cut(s)	181
AvrII	CCTAGG	1 cut(s)	506
AxyI	CCTNAGG	1 cut(s)	144
BalI	TGGCCA	1 cut(s)	545
BanII	GRGCYC	2 cut(s)	204, 690
BbsI	GAAGAC	2 cut(s)	88, 498
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	831
BceAI	ACGGC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	675
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	4 cut(s)	507, 797, 809, 895
BisI	GCNGC	2 cut(s)	232, 845
BlnI	CCTAGG	1 cut(s)	506
BlsI	GCNGC	2 cut(s)	233, 846
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	648, 828
BmiI	GGNNCC	3 cut(s)	600, 633, 698
BpiI	GAAGAC	2 cut(s)	88, 498
BpuEI	CTTGAG	2 cut(s)	188, 689
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	150, 506, 651
BsaWI	WCCGGW	1 cut(s)	680
Bse21I	CCTNAGG	1 cut(s)	144
BseDI	CCNNGG	3 cut(s)	150, 506, 651
BseGI	GGATG	3 cut(s)	60, 123, 853
BseMII	CTCAG	3 cut(s)	135, 594, 789
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	1 cut(s)	831
Bsh1236I	CGCG	3 cut(s)	231, 326, 381
BshFI	GGCC	6 cut(s)	45, 149, 155, 545, 650, 829
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	6 cut(s)	45, 149, 155, 545, 650, 829
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	204, 690
Bsp143I	GATC	3 cut(s)	69, 675, 726
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	4 cut(s)	231, 234, 690, 834
BspANI	GGCC	6 cut(s)	45, 149, 155, 545, 650, 829
BspCNI	CTCAG	3 cut(s)	136, 595, 788
BspFNI	CGCG	3 cut(s)	231, 326, 381
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	3 cut(s)	600, 633, 698
BsrBI	CCGCTC	1 cut(s)	692
BssECI	CCNNGG	3 cut(s)	150, 506, 651
BssMI	GATC	3 cut(s)	69, 675, 726
BssNAI	GTATAC	1 cut(s)	396
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	3 cut(s)	150, 506, 651
Bst1107I	GTATAC	1 cut(s)	396
Bst4CI	ACNGT	3 cut(s)	266, 452, 615
Bst6I	CTCTTC	5 cut(s)	8, 21, 264, 291, 708
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	690
BstDEI	CTNAG	3 cut(s)	144, 603, 775
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	3 cut(s)	60, 123, 853
BstFNI	CGCG	3 cut(s)	231, 326, 381
BstKTI	GATC	3 cut(s)	72, 678, 729
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	3 cut(s)	69, 675, 726
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 81, 240, 291, 527
BstNSI	RCATGY	2 cut(s)	142, 430
BstUI	CGCG	3 cut(s)	231, 326, 381
BstV1I	GCAGC	1 cut(s)	831
BstV2I	GAAGAC	2 cut(s)	88, 498
BstXI	CCANNNNNNTGG	1 cut(s)	595
BstZ17I	GTATAC	1 cut(s)	396
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	6 cut(s)	45, 149, 155, 545, 650, 829
BtgI	CCRYGG	1 cut(s)	150
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	3 cut(s)	60, 123, 853
BtsIMutI	CAGTG	1 cut(s)	448
Cac8I	GCNNGC	1 cut(s)	690
CciI	TCATGA	1 cut(s)	565
Cfr13I	GGNCC	2 cut(s)	648, 828
Csp6I	GTAC	2 cut(s)	582, 592
CviAII	CATG	6 cut(s)	10, 139, 151, 427, 566, 589
CviQI	GTAC	2 cut(s)	582, 592
DdeI	CTNAG	3 cut(s)	144, 603, 775
DpnI	GATC	3 cut(s)	71, 677, 728
DpnII	GATC	3 cut(s)	69, 675, 726
DrdI	GACNNNNNNGTC	1 cut(s)	500
DseDI	GACNNNNNNGTC	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	153, 543
Eam1104I	CTCTTC	5 cut(s)	8, 21, 264, 291, 708
EarI	CTCTTC	5 cut(s)	8, 21, 264, 291, 708
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	3 cut(s)	150, 506, 651
Eco24I	GRGCYC	2 cut(s)	204, 690
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	783
Eco81I	CCTNAGG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	202
EcoT14I	CCWWGG	3 cut(s)	150, 506, 651
EcoT38I	GRGCYC	2 cut(s)	204, 690
ErhI	CCWWGG	3 cut(s)	150, 506, 651
FaeI	CATG	6 cut(s)	13, 142, 154, 430, 569, 592
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	6 cut(s)	9, 138, 150, 426, 565, 588
FauI	CCCGC	1 cut(s)	697
FbaI	TGATCA	1 cut(s)	675
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	2 cut(s)	232, 845
FokI	GGATG	3 cut(s)	67, 110, 840
FriOI	GRGCYC	2 cut(s)	204, 690
Fsp4HI	GCNGC	2 cut(s)	232, 845
FspBI	CTAG	4 cut(s)	507, 797, 809, 895
GluI	GCNGC	2 cut(s)	232, 845
HaeIII	GGCC	6 cut(s)	45, 149, 155, 545, 650, 829
HapII	CCGG	1 cut(s)	681
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	6 cut(s)	13, 142, 154, 430, 569, 592
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HinfI	GANTC	3 cut(s)	179, 226, 607
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	5 cut(s)	100, 278, 286, 670, 883
Hpy166II	GTNNAC	6 cut(s)	211, 304, 396, 448, 584, 739
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	4 cut(s)	566, 602, 668, 809
Hpy8I	GTNNAC	6 cut(s)	211, 304, 396, 448, 584, 739
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	5 cut(s)	13, 169, 384, 547, 781
HpyCH4III	ACNGT	3 cut(s)	266, 452, 615
HpyCH4IV	ACGT	2 cut(s)	444, 501
HpyCH4V	TGCA	5 cut(s)	167, 341, 422, 430, 660
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 81, 240, 291, 527
HpyF3I	CTNAG	3 cut(s)	144, 603, 775
HpySE526I	ACGT	2 cut(s)	444, 501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	6 cut(s)	13, 142, 154, 430, 569, 592
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	3 cut(s)	69, 675, 726
LmnI	GCTCC	2 cut(s)	604, 631
LpnPI	CCDG	8 cut(s)	27, 156, 205, 477, 615, 694, 762, 774
Lsp1109I	GCAGC	1 cut(s)	831
MaeI	CTAG	4 cut(s)	507, 797, 809, 895
MaeII	ACGT	2 cut(s)	444, 501
MaeIII	GTNAC	5 cut(s)	274, 401, 440, 452, 719
MalI	GATC	3 cut(s)	71, 677, 728
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	3 cut(s)	69, 675, 726
MhlI	GDGCHC	2 cut(s)	204, 690
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	2 cut(s)	516, 814
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	173, 601
MmeI	TCCRAC	1 cut(s)	297
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MslI	CAYNNNNRTG	3 cut(s)	155, 264, 435
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	1 cut(s)	681
MvnI	CGCG	3 cut(s)	231, 326, 381
MwoI	GCNNNNNNNGC	5 cut(s)	72, 81, 240, 291, 527
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	69, 675, 726
NlaIII	CATG	6 cut(s)	13, 142, 154, 430, 569, 592
NlaIV	GGNNCC	3 cut(s)	600, 633, 698
NmuCI	GTSAC	3 cut(s)	274, 401, 452
NspI	RCATGY	2 cut(s)	142, 430
OliI	CACNNNNGTG	1 cut(s)	435
PagI	TCATGA	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	385
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	233, 846
PleI	GAGTC	2 cut(s)	173, 601
PpsI	GAGTC	2 cut(s)	173, 601
Psp124BI	GAGCTC	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	600, 633, 698
PspPI	GGNCC	2 cut(s)	648, 828
PsrI	GAACNNNNNNTAC	2 cut(s)	689, 721
RsaI	GTAC	2 cut(s)	583, 593
RsaNI	GTAC	2 cut(s)	582, 592
RseI	CAYNNNNRTG	3 cut(s)	155, 264, 435
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	232, 845
Sau3AI	GATC	3 cut(s)	69, 675, 726
Sau96I	GGNCC	2 cut(s)	648, 828
SchI	GAGTC	2 cut(s)	173, 601
SduI	GDGCHC	2 cut(s)	204, 690
SmiMI	CAYNNNNRTG	3 cut(s)	155, 264, 435
SmlI	CTYRAG	2 cut(s)	203, 668
SmoI	CTYRAG	2 cut(s)	203, 668
Sse9I	AATT	2 cut(s)	516, 814
SsiI	CCGC	4 cut(s)	231, 234, 690, 834
SspMI	CTAG	4 cut(s)	507, 797, 809, 895
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	3 cut(s)	150, 506, 651
TaaI	ACNGT	3 cut(s)	266, 452, 615
TaiI	ACGT	2 cut(s)	447, 504
TaqI	TCGA	1 cut(s)	255
TasI	AATT	2 cut(s)	516, 814
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	1 cut(s)	455
TseFI	GTSAC	3 cut(s)	274, 401, 452
TseI	GCWGC	1 cut(s)	844
Tsp45I	GTSAC	3 cut(s)	274, 401, 452
TspDTI	ATGAA	9 cut(s)	26, 188, 238, 504, 554, 582, 636, 726, 783
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	455
XbaI	TCTAGA	1 cut(s)	808
XceI	RCATGY	2 cut(s)	142, 430
XcmI	CCANNNNNNNNNTGG	1 cut(s)	642
XmaJI	CCTAGG	1 cut(s)	506
XmiI	GTMKAC	1 cut(s)	395
XspI	CTAG	4 cut(s)	507, 797, 809, 895
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.