Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

10675857 .. 10676578

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G120500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGGTGAAATCAGCAAAGGTCTCTGCTTCTGAGTCCATTAAACATGAGTCAGACGTTCTCTTTGAGATCAAGGGTTGCCCCTTCATTATCGAGCGCCTGGGTGAAGAGACCACGGCCACAGACAAGGGTGACATGGCCTACAACTTATACACAAGGTCAATTCTTGAATGGATTCAACACATTCACAAGTGTGACTATGTTCACTGCGATTTGAAGCTGGACAACATTTTGCTTGTGCCTACCACAACAACTAGTTCTGGTGGTACTAGTTTTGTAGCCAAGATTGCAGATTTTGGACTCGCTAAGAAAACTAATGTAAATTACAGTCGATGGGGAGGCACGCCTAGATATCTGTCCCCAGAGGCTTTTATTAATAACAAACAAGATCAGTCCTCCGATATTTGGTCTCTAGGTTGTATTGTGTTTGAGATGCTAACCGGCAAGTCGCCCTGGGATTTGAAGCCTGGTTACAATCCAAACATGTTGATGTTTTATCATCTACGTACTTGCAAAATTCCGACTGGAATCTCAGATGTGACCAGGGATTTTCTCAAGAGTTGCCTTGCCATGAAGAGCAGGGAAAGATTAACAGCGGAAAGTCTCTTGTCTCATCCATTCGTAGCGCAGCCACAATCATCAAAAGAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

216

Amino Acids

24.25

Weight (kDa)

7.62

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 596
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	516
AfaI	GTAC	2 cut(s)	268, 508
AfiI	CCNNNNNNNGG	1 cut(s)	405
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	170, 179, 217, 463
AhlI	ACTAGT	2 cut(s)	254, 269
AjnI	CCWGG	4 cut(s)	99, 452, 466, 542
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	5 cut(s)	28, 104, 414, 608, 615
AoxI	GGCC	2 cut(s)	117, 138
ApeKI	GCWGC	1 cut(s)	628
ApoI	RAATTY	1 cut(s)	516
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AseI	ATTAAT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	174
AspLEI	GCGC	2 cut(s)	99, 628
AsuHPI	GGTGA	3 cut(s)	19, 116, 143
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbvI	GCAGC	1 cut(s)	640
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	4 cut(s)	101, 454, 468, 544
BcoDI	GTCTC	5 cut(s)	28, 104, 414, 608, 615
BcuI	ACTAGT	2 cut(s)	254, 269
BfaI	CTAG	4 cut(s)	255, 270, 348, 413
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	1 cut(s)	629
BlsI	GCNGC	1 cut(s)	630
Bme1390I	CCNGG	4 cut(s)	101, 454, 468, 544
BmrFI	CCNGG	4 cut(s)	101, 454, 468, 544
BmsI	GCATC	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	506
BsaI	GGTCTC	3 cut(s)	28, 104, 414
BsaJI	CCNNGG	5 cut(s)	100, 114, 452, 453, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	405
Bse118I	RCCGGY	1 cut(s)	440
Bse1I	ACTGG	1 cut(s)	529
BseBI	CCWGG	4 cut(s)	101, 454, 468, 544
BseDI	CCNNGG	5 cut(s)	100, 114, 452, 453, 543
BseGI	GGATG	1 cut(s)	613
BseLI	CCNNNNNNNGG	1 cut(s)	405
BseMII	CTCAG	2 cut(s)	24, 546
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	640
BshFI	GGCC	2 cut(s)	119, 140
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	405
BsmAI	GTCTC	5 cut(s)	28, 104, 414, 608, 615
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	119, 140
Bso31I	GGTCTC	3 cut(s)	28, 104, 414
Bsp143I	GATC	2 cut(s)	69, 388
BspACI	CCGC	2 cut(s)	5, 596
BspANI	GGCC	2 cut(s)	119, 140
BspCNI	CTCAG	2 cut(s)	25, 545
BspQI	GCTCTTC	1 cut(s)	569
BspTNI	GGTCTC	3 cut(s)	28, 104, 414
BsrFI	RCCGGY	1 cut(s)	440
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	5 cut(s)	100, 114, 452, 453, 543
BssMI	GATC	2 cut(s)	69, 388
Bst2UI	CCWGG	4 cut(s)	101, 454, 468, 544
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	102, 569
BstBAI	YACGTR	1 cut(s)	506
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	3 cut(s)	33, 306, 532
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	2 cut(s)	99, 628
BstKTI	GATC	2 cut(s)	72, 391
BstMAI	GTCTC	5 cut(s)	28, 104, 414, 608, 615
BstMBI	GATC	2 cut(s)	69, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	4 cut(s)	101, 454, 468, 544
BstNSI	RCATGY	1 cut(s)	487
BstSCI	CCNGG	4 cut(s)	99, 452, 466, 542
BstSNI	TACGTA	1 cut(s)	506
BstV1I	GCAGC	1 cut(s)	640
BsuRI	GGCC	2 cut(s)	119, 140
BtgI	CCRYGG	1 cut(s)	114
BtsCI	GGATG	1 cut(s)	613
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	2 cut(s)	99, 628
Cfr10I	RCCGGY	1 cut(s)	440
Csp6I	GTAC	2 cut(s)	267, 507
CviAII	CATG	4 cut(s)	47, 136, 484, 571
CviJI	RGCY	7 cut(s)	119, 140, 220, 281, 368, 466, 631
CviKI_1	RGCY	7 cut(s)	119, 140, 220, 281, 368, 466, 631
CviQI	GTAC	2 cut(s)	267, 507
DdeI	CTNAG	3 cut(s)	33, 306, 532
DpnI	GATC	2 cut(s)	71, 390
DpnII	GATC	2 cut(s)	69, 388
EaeI	YGGCCR	1 cut(s)	117
Eam1104I	CTCTTC	2 cut(s)	102, 569
EarI	CTCTTC	2 cut(s)	102, 569
Eco105I	TACGTA	1 cut(s)	506
Eco31I	GGTCTC	3 cut(s)	28, 104, 414
Eco32I	GATATC	1 cut(s)	353
EcoRII	CCWGG	4 cut(s)	99, 452, 466, 542
EcoRV	GATATC	1 cut(s)	353
FaeI	CATG	4 cut(s)	50, 139, 487, 574
FaiI	YATR	6 cut(s)	48, 137, 151, 201, 485, 572
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	46, 135, 483, 570
Fnu4HI	GCNGC	1 cut(s)	629
FokI	GGATG	1 cut(s)	600
Fsp4HI	GCNGC	1 cut(s)	629
FspBI	CTAG	4 cut(s)	255, 270, 348, 413
GlaI	GCGC	2 cut(s)	98, 627
GluI	GCNGC	1 cut(s)	629
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	119, 140
HapII	CCGG	1 cut(s)	441
HhaI	GCGC	2 cut(s)	99, 628
Hin1II	CATG	4 cut(s)	50, 139, 487, 574
Hin6I	GCGC	2 cut(s)	97, 626
HinP1I	GCGC	2 cut(s)	97, 626
HinfI	GANTC	5 cut(s)	35, 50, 175, 300, 528
HpaII	CCGG	1 cut(s)	441
HphI	GGTGA	3 cut(s)	19, 116, 143
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	5 cut(s)	34, 55, 400, 522, 535
Hpy188III	TCNNGA	2 cut(s)	167, 556
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4IV	ACGT	2 cut(s)	57, 505
HpyCH4V	TGCA	2 cut(s)	290, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	33, 306, 532
HpySE526I	ACGT	2 cut(s)	57, 505
Hsp92II	CATG	4 cut(s)	50, 139, 487, 574
HspAI	GCGC	2 cut(s)	97, 626
Kzo9I	GATC	2 cut(s)	69, 388
LguI	GCTCTTC	1 cut(s)	569
Lsp1109I	GCAGC	1 cut(s)	640
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	4 cut(s)	255, 270, 348, 413
MaeII	ACGT	2 cut(s)	57, 505
MaeIII	GTNAC	4 cut(s)	131, 194, 470, 538
MalI	GATC	2 cut(s)	71, 390
MboI	GATC	2 cut(s)	69, 388
MboII	GAAGA	2 cut(s)	119, 586
MluCI	AATT	3 cut(s)	162, 322, 516
MlyI	GAGTC	3 cut(s)	44, 59, 294
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	3 cut(s)	332, 358, 406
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	42, 375, 590
MslI	CAYNNNNRTG	2 cut(s)	192, 488
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	441
MspR9I	CCNGG	4 cut(s)	101, 454, 468, 544
MvaI	CCWGG	4 cut(s)	101, 454, 468, 544
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	69, 388
NlaIII	CATG	4 cut(s)	50, 139, 487, 574
NmuCI	GTSAC	3 cut(s)	131, 194, 538
NspI	RCATGY	1 cut(s)	487
OliI	CACNNNNGTG	1 cut(s)	192
PasI	CCCWGGG	1 cut(s)	453
PciI	ACATGT	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	569
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	175, 528
PkrI	GCNGC	1 cut(s)	630
PleI	GAGTC	3 cut(s)	43, 58, 294
PpsI	GAGTC	3 cut(s)	43, 58, 294
Ppu21I	YACGTR	1 cut(s)	506
PscI	ACATGT	1 cut(s)	483
PshBI	ATTAAT	1 cut(s)	375
Psp6I	CCWGG	4 cut(s)	99, 452, 466, 542
PspGI	CCWGG	4 cut(s)	99, 452, 466, 542
RsaI	GTAC	2 cut(s)	268, 508
RsaNI	GTAC	2 cut(s)	267, 507
RseI	CAYNNNNRTG	2 cut(s)	192, 488
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	42, 375, 590
SatI	GCNGC	1 cut(s)	629
Sau3AI	GATC	2 cut(s)	69, 388
SchI	GAGTC	3 cut(s)	44, 59, 294
ScrFI	CCNGG	4 cut(s)	101, 454, 468, 544
SetI	ASST	6 cut(s)	24, 60, 161, 222, 418, 508
SfaNI	GCATC	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	192, 488
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
SnaBI	TACGTA	1 cut(s)	506
SpeI	ACTAGT	2 cut(s)	254, 269
Sse9I	AATT	3 cut(s)	162, 322, 516
SsiI	CCGC	2 cut(s)	5, 596
SspMI	CTAG	4 cut(s)	255, 270, 348, 413
StyD4I	CCNGG	4 cut(s)	99, 452, 466, 542
TaaI	ACNGT	1 cut(s)	329
TaiI	ACGT	2 cut(s)	60, 508
TaqI	TCGA	2 cut(s)	93, 331
TasI	AATT	3 cut(s)	162, 322, 516
TfiI	GAWTC	2 cut(s)	175, 528
Tru1I	TTAA	3 cut(s)	42, 375, 590
Tru9I	TTAA	3 cut(s)	42, 375, 590
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	3 cut(s)	131, 194, 538
TseI	GCWGC	1 cut(s)	628
Tsp45I	GTSAC	3 cut(s)	131, 194, 538
TspDTI	ATGAA	2 cut(s)	76, 587
TspRI	CASTG	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	375
XapI	RAATTY	1 cut(s)	516
XceI	RCATGY	1 cut(s)	487
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	4 cut(s)	255, 270, 348, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.