Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

50049850 .. 50050342

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTTCTTGTCTCCGGAGACTGTCTTGTACAATGAGCAAGAACAAGCCAGTGATATTTGGGCTGTGGGGTGTATTGTTCTTGAAATGCTTCCTGGAGAGCGCCCCGGGAATCATTTCTACGATCATGAGAGCGATACTCTCTACATTGTTGATGGAATGGAGCCTAAAATTCCTGATACGATCTCGAGTCTTGCTAGGGAGTTTCCAGGGTTTTGCCTAGCCAAGGAAACTCCGGAAAGGTGGACAGCTGAAGAGCTTCTATCTCATCCCTTTGTGGCAAATGTTGTTAGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

98

Amino Acids

11.14

Weight (kDa)

4.39

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 92	2.1e-13	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	13, 232
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	2 cut(s)	91, 205
AluBI	AGCT	2 cut(s)	248, 256
AluI	AGCT	2 cut(s)	248, 256
Alw26I	GTCTC	2 cut(s)	11, 15
Ama87I	CYCGRG	2 cut(s)	104, 184
Aor13HI	TCCGGA	2 cut(s)	13, 232
ApoI	RAATTY	1 cut(s)	168
Asp700I	GAANNNNTTC	3 cut(s)	87, 113, 255
AspLEI	GCGC	1 cut(s)	102
AsuC2I	CCSGG	2 cut(s)	105, 106
AvaI	CYCGRG	2 cut(s)	104, 184
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	2 cut(s)	93, 207
BcnI	CCSGG	2 cut(s)	105, 106
BcoDI	GTCTC	2 cut(s)	11, 15
BfaI	CTAG	2 cut(s)	195, 218
BfmI	CTRYAG	1 cut(s)	293
BfoI	RGCGCY	1 cut(s)	103
Bme1390I	CCNGG	4 cut(s)	93, 105, 106, 207
BmeT110I	CYCGRG	2 cut(s)	104, 184
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	4 cut(s)	93, 105, 106, 207
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
BpmI	CTGGAG	1 cut(s)	114
BpuMI	CCSGG	2 cut(s)	105, 106
BsaJI	CCNNGG	4 cut(s)	103, 104, 206, 222
BsaWI	WCCGGW	2 cut(s)	13, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	2 cut(s)	13, 232
BseBI	CCWGG	2 cut(s)	93, 207
BseDI	CCNNGG	4 cut(s)	103, 104, 206, 222
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	104, 184
BsiSI	CCGG	3 cut(s)	14, 105, 233
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	11, 15
BsoBI	CYCGRG	2 cut(s)	104, 184
Bsp13I	TCCGGA	2 cut(s)	13, 232
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	121, 180
BspEI	TCCGGA	2 cut(s)	13, 232
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	246
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	103, 104, 206, 222
BssMI	GATC	2 cut(s)	121, 180
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	93, 207
Bst4CI	ACNGT	2 cut(s)	22, 294
Bst6I	CTCTTC	1 cut(s)	246
BstAUI	TGTACA	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	265
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	2 cut(s)	124, 183
BstMAI	GTCTC	2 cut(s)	11, 15
BstMBI	GATC	2 cut(s)	121, 180
BstNI	CCWGG	2 cut(s)	93, 207
BstSCI	CCNGG	4 cut(s)	91, 103, 104, 205
BstSFI	CTRYAG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	55
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	102
Cfr9I	CCCGGG	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	47, 62, 163, 221, 248, 256
CviKI_1	RGCY	6 cut(s)	47, 62, 163, 221, 248, 256
CviQI	GTAC	1 cut(s)	28
DpnI	GATC	2 cut(s)	123, 182
DpnII	GATC	2 cut(s)	121, 180
Eam1104I	CTCTTC	1 cut(s)	246
EarI	CTCTTC	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	2 cut(s)	104, 184
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	2 cut(s)	91, 205
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	252
FspBI	CTAG	2 cut(s)	195, 218
GlaI	GCGC	1 cut(s)	101
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	103
HapII	CCGG	3 cut(s)	14, 105, 233
HhaI	GCGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	128
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	109, 187
HpaII	CCGG	3 cut(s)	14, 105, 233
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	6 cut(s)	14, 80, 125, 173, 184, 233
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	22, 294
Hsp92II	CATG	1 cut(s)	128
HspAI	GCGC	1 cut(s)	100
Kpn2I	TCCGGA	2 cut(s)	13, 232
Kzo9I	GATC	2 cut(s)	121, 180
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	9 cut(s)	27, 61, 78, 105, 118, 186, 192, 219, 246
MaeI	CTAG	2 cut(s)	195, 218
MalI	GATC	2 cut(s)	123, 182
MboI	GATC	2 cut(s)	121, 180
MboII	GAAGA	1 cut(s)	263
MluCI	AATT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	196
MroI	TCCGGA	2 cut(s)	13, 232
MroXI	GAANNNNTTC	3 cut(s)	87, 113, 255
MspA1I	CMGCKG	1 cut(s)	248
MspI	CCGG	3 cut(s)	14, 105, 233
MspR9I	CCNGG	4 cut(s)	93, 105, 106, 207
MvaI	CCWGG	2 cut(s)	93, 207
NciI	CCSGG	2 cut(s)	105, 106
NdeII	GATC	2 cut(s)	121, 180
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	184
PagI	TCATGA	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	246
PdmI	GAANNNNTTC	3 cut(s)	87, 113, 255
PfeI	GAWTC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	91
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
Psp6I	CCWGG	2 cut(s)	91, 205
PspGI	CCWGG	2 cut(s)	91, 205
PspN4I	GGNNCC	1 cut(s)	162
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SapI	GCTCTTC	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	121, 180
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	4 cut(s)	93, 105, 106, 207
SetI	ASST	3 cut(s)	242, 250, 258
SfcI	CTRYAG	1 cut(s)	293
Sfr274I	CTCGAG	1 cut(s)	184
SlaI	CTCGAG	1 cut(s)	184
SmaI	CCCGGG	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	168
SspMI	CTAG	2 cut(s)	195, 218
StyD4I	CCNGG	4 cut(s)	91, 103, 104, 205
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	22, 294
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	168
TatI	WGTACW	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	55
TspMI	CCCGGG	1 cut(s)	104
TspRI	CASTG	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	184
XmaI	CCCGGG	1 cut(s)	104
XmnI	GAANNNNTTC	3 cut(s)	87, 113, 255
XspI	CTAG	2 cut(s)	195, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.