Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000399.1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

75667 .. 76353

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000399.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggccatgaaatcggcaaagatcaaggattcagattccattcgatacgagctcgaggtgtttagggagttgaataacaagggtggttcttgccccttcatcattgagcactatggtgaagaggtgacatggagtgacgacggggaagaggtctataacttggccttggaagttgcatggggaagccttgcgaggctgataaagattatcggtcatgggttgccagaatccgatgtgaggcggtacaccggcgacattcttgaaggggttcgacacatacacaagagtgggtatgttcactgtgatttgaaaccagataagatcttgcttgtggaaaatgaagatgatagtgcctataccttggtagccaaagtgggtgacttggggttggccaagaaggaggaggttcaagaaaggtggagaggcactctcatgttcttgtctccggagactgtcttgtacaatgagcaagaacaagccagtgatatttgggctgtggggtgtattgtgcttgaaatgcttactggagagcgccccgggaatcatttctacgatcatgagagcgatactctctacattgttgatggaatggagcctaaaattcctgatatgatctcgagtcttgctagggagtttctagggttttgcctagctagccaaggaaactccggaaaggtggacagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

228

Amino Acids

25.62

Weight (kDa)

4.72

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	445, 668
AciI	CCGC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	3, 390
AcsI	RAATTY	1 cut(s)	600
AfaI	GTAC	2 cut(s)	245, 461
AfiI	CCNNNNNNNGG	1 cut(s)	237
AgsI	TTSAA	5 cut(s)	73, 263, 310, 410, 515
AleI	CACNNNNGTG	2 cut(s)	114, 285
AluBI	AGCT	3 cut(s)	52, 653, 684
AluI	AGCT	3 cut(s)	52, 653, 684
Alw21I	GWGCWC	2 cut(s)	54, 111
Alw26I	GTCTC	2 cut(s)	443, 447
Ama87I	CYCGRG	3 cut(s)	53, 536, 616
Aor13HI	TCCGGA	2 cut(s)	445, 668
AoxI	GGCC	3 cut(s)	3, 162, 390
ApoI	RAATTY	1 cut(s)	600
Asp700I	GAANNNNTTC	2 cut(s)	267, 545
AspLEI	GCGC	1 cut(s)	534
AsuC2I	CCSGG	2 cut(s)	537, 538
AsuHPI	GGTGA	3 cut(s)	128, 136, 389
AsuNHI	GCTAGC	1 cut(s)	653
AvaI	CYCGRG	3 cut(s)	53, 536, 616
BalI	TGGCCA	2 cut(s)	5, 392
BanII	GRGCYC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	54, 111
BccI	CCATC	1 cut(s)	578
BcnI	CCSGG	2 cut(s)	537, 538
BcoDI	GTCTC	2 cut(s)	443, 447
BfaI	CTAG	4 cut(s)	627, 638, 650, 654
BfoI	RGCGCY	1 cut(s)	535
BglII	AGATCT	1 cut(s)	321
Bme1390I	CCNGG	2 cut(s)	537, 538
BmeT110I	CYCGRG	3 cut(s)	53, 536, 616
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	537, 538
BmtI	GCTAGC	1 cut(s)	657
BplI	GAGNNNNNCTC	6 cut(s)	412, 444, 414, 446, 553, 585
BpmI	CTGGAG	1 cut(s)	546
BpuMI	CCSGG	2 cut(s)	537, 538
BsaJI	CCNNGG	5 cut(s)	165, 360, 535, 536, 658
BsaWI	WCCGGW	2 cut(s)	445, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	480, 529
BseAI	TCCGGA	2 cut(s)	445, 668
BseDI	CCNNGG	5 cut(s)	165, 360, 535, 536, 658
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	480, 529
BseRI	GAGGAG	1 cut(s)	416
BshFI	GGCC	3 cut(s)	5, 164, 392
BsiHKAI	GWGCWC	2 cut(s)	54, 111
BsiHKCI	CYCGRG	3 cut(s)	53, 536, 616
BsiSI	CCGG	4 cut(s)	249, 446, 537, 669
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	443, 447
BsnI	GGCC	3 cut(s)	5, 164, 392
BsoBI	CYCGRG	3 cut(s)	53, 536, 616
Bsp1286I	GDGCHC	2 cut(s)	54, 111
Bsp13I	TCCGGA	2 cut(s)	445, 668
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	4 cut(s)	21, 321, 553, 612
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	3 cut(s)	5, 164, 392
BspEI	TCCGGA	2 cut(s)	445, 668
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	594
BspOI	GCTAGC	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	2 cut(s)	480, 529
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	5 cut(s)	165, 360, 535, 536, 658
BssMI	GATC	4 cut(s)	21, 321, 553, 612
BssT1I	CCWWGG	3 cut(s)	165, 360, 658
Bst4CI	ACNGT	2 cut(s)	302, 454
Bst6I	CTCTTC	2 cut(s)	114, 141
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	1 cut(s)	655
BstH2I	RGCGCY	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	534
BstKTI	GATC	4 cut(s)	24, 324, 556, 615
BstMAI	GTCTC	2 cut(s)	443, 447
BstMBI	GATC	4 cut(s)	21, 321, 553, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	517, 654
BstSCI	CCNGG	2 cut(s)	535, 536
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	3 cut(s)	5, 164, 392
BtsIMutI	CAGTG	2 cut(s)	298, 487
Cac8I	GCNNGC	1 cut(s)	655
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	534
Cfr10I	RCCGGY	1 cut(s)	248
Cfr9I	CCCGGG	1 cut(s)	536
Csp6I	GTAC	2 cut(s)	244, 460
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	6 cut(s)	7, 129, 177, 215, 433, 557
CviQI	GTAC	2 cut(s)	244, 460
DpnI	GATC	4 cut(s)	23, 323, 555, 614
DpnII	GATC	4 cut(s)	21, 321, 553, 612
EaeI	YGGCCR	2 cut(s)	3, 390
Eam1104I	CTCTTC	2 cut(s)	114, 141
EarI	CTCTTC	2 cut(s)	114, 141
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	3 cut(s)	165, 360, 658
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
Eco88I	CYCGRG	3 cut(s)	53, 536, 616
EcoICRI	GAGCTC	1 cut(s)	52
EcoT14I	CCWWGG	3 cut(s)	165, 360, 658
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	3 cut(s)	165, 360, 658
FaeI	CATG	6 cut(s)	10, 132, 180, 218, 436, 560
FatI	CATG	6 cut(s)	6, 128, 176, 214, 432, 556
FriOI	GRGCYC	1 cut(s)	54
FspBI	CTAG	4 cut(s)	627, 638, 650, 654
GlaI	GCGC	1 cut(s)	533
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	535
HaeIII	GGCC	3 cut(s)	5, 164, 392
HapII	CCGG	4 cut(s)	249, 446, 537, 669
HhaI	GCGC	1 cut(s)	534
Hin1II	CATG	6 cut(s)	10, 132, 180, 218, 436, 560
Hin6I	GCGC	1 cut(s)	532
HinP1I	GCGC	1 cut(s)	532
HinfI	GANTC	5 cut(s)	29, 35, 227, 541, 619
HpaII	CCGG	4 cut(s)	249, 446, 537, 669
HphI	GGTGA	3 cut(s)	128, 136, 389
Hpy166II	GTNNAC	3 cut(s)	246, 298, 679
Hpy188I	TCNGA	2 cut(s)	34, 232
Hpy188III	TCNNGA	7 cut(s)	260, 410, 446, 557, 605, 616, 669
Hpy8I	GTNNAC	3 cut(s)	246, 298, 679
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	3 cut(s)	106, 257, 391
HpyCH4III	ACNGT	2 cut(s)	302, 454
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	517, 654
Hsp92II	CATG	6 cut(s)	10, 132, 180, 218, 436, 560
HspAI	GCGC	1 cut(s)	532
Kpn2I	TCCGGA	2 cut(s)	445, 668
Kzo9I	GATC	4 cut(s)	21, 321, 553, 612
LmnI	GCTCC	1 cut(s)	592
LpnPI	CCDG	9 cut(s)	237, 262, 327, 459, 493, 510, 550, 618, 682
MaeI	CTAG	4 cut(s)	627, 638, 650, 654
MaeIII	GTNAC	3 cut(s)	124, 134, 377
MalI	GATC	4 cut(s)	23, 323, 555, 614
MboI	GATC	4 cut(s)	21, 321, 553, 612
MboII	GAAGA	3 cut(s)	131, 158, 353
MflI	RGATCY	1 cut(s)	321
MhlI	GDGCHC	2 cut(s)	54, 111
MlsI	TGGCCA	2 cut(s)	5, 392
MluCI	AATT	1 cut(s)	600
MluNI	TGGCCA	2 cut(s)	5, 392
MlyI	GAGTC	1 cut(s)	628
MnlI	CCTC	8 cut(s)	49, 115, 142, 186, 231, 394, 397, 416
Mox20I	TGGCCA	2 cut(s)	5, 392
MroI	TCCGGA	2 cut(s)	445, 668
MroXI	GAANNNNTTC	2 cut(s)	267, 545
MscI	TGGCCA	2 cut(s)	5, 392
MslI	CAYNNNNRTG	3 cut(s)	114, 285, 431
Msp20I	TGGCCA	2 cut(s)	5, 392
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	4 cut(s)	249, 446, 537, 669
MspR9I	CCNGG	2 cut(s)	537, 538
MwoI	GCNNNNNNNGC	2 cut(s)	517, 654
NciI	CCSGG	2 cut(s)	537, 538
NdeII	GATC	4 cut(s)	21, 321, 553, 612
NheI	GCTAGC	1 cut(s)	653
NlaIII	CATG	6 cut(s)	10, 132, 180, 218, 436, 560
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	3 cut(s)	124, 134, 377
OliI	CACNNNNGTG	2 cut(s)	114, 285
PaeR7I	CTCGAG	2 cut(s)	53, 616
PagI	TCATGA	1 cut(s)	556
PdmI	GAANNNNTTC	2 cut(s)	267, 545
PfeI	GAWTC	4 cut(s)	29, 35, 227, 541
PleI	GAGTC	1 cut(s)	627
PpsI	GAGTC	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	594
PspXI	VCTCGAGB	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	684
RsaI	GTAC	2 cut(s)	245, 461
RsaNI	GTAC	2 cut(s)	244, 460
RseI	CAYNNNNRTG	3 cut(s)	114, 285, 431
SacI	GAGCTC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	21, 321, 553, 612
SchI	GAGTC	1 cut(s)	628
ScrFI	CCNGG	2 cut(s)	537, 538
SduI	GDGCHC	2 cut(s)	54, 111
Sfr274I	CTCGAG	2 cut(s)	53, 616
SgrAI	CRCCGGYG	1 cut(s)	248
SlaI	CTCGAG	2 cut(s)	53, 616
SmaI	CCCGGG	1 cut(s)	538
SmiMI	CAYNNNNRTG	3 cut(s)	114, 285, 431
SmlI	CTYRAG	2 cut(s)	53, 616
SmoI	CTYRAG	2 cut(s)	53, 616
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	4 cut(s)	627, 638, 650, 654
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	535, 536
StyI	CCWWGG	3 cut(s)	165, 360, 658
TaaI	ACNGT	2 cut(s)	302, 454
TaqI	TCGA	4 cut(s)	43, 54, 271, 617
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	1 cut(s)	600
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	4 cut(s)	29, 35, 227, 541
TscAI	CASTG	2 cut(s)	305, 487
TseFI	GTSAC	3 cut(s)	124, 134, 377
Tsp45I	GTSAC	3 cut(s)	124, 134, 377
TspDTI	ATGAA	3 cut(s)	23, 88, 354
TspMI	CCCGGG	1 cut(s)	536
TspRI	CASTG	2 cut(s)	305, 487
XapI	RAATTY	1 cut(s)	600
XhoI	CTCGAG	2 cut(s)	53, 616
XmaI	CCCGGG	1 cut(s)	536
XmnI	GAANNNNTTC	2 cut(s)	267, 545
XspI	CTAG	4 cut(s)	627, 638, 650, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.