Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

56254870 .. 56255355

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG329100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAAGAGGAAGGGAGAAGAGAGCTTGGGTTCAGGGCACAAGTGGATTAGAGGAAACAAGATCGGGGAAGGACGCTTCGGCTCTGTGTTCGTTGCTTTCTTCAAGAGACCCTACATCCATATCGACCATATGCCTGAGGCCATGGCGATAAAATCAGCCAAGATGAGGGACTCAGAGTCTATTCAATACGAGCTAGAGGTTTATAGGGACTTGAACAATCATGGTGGTCTTTGCCCCTTCATTATTGAGCATTACGGTGAAGAGGAAACATGGAGCGATGAGGGCGAAGAGGTTTATAACTTGGCGTTGGAAGTTGCATGGGGAAGTCTTGCAAGGCTGATAAAGGTTTTCGGTTCTGGGTTGCCGGAATCTGATGTGCGGCGGTATACCTGTGACCTTCTTGAAGGAATTAGACACATCCACAAGTGTGCATGGTTATGTCCACTGTGGCTTGAAGCCACAAAATATTCTTCTTGTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

161

Amino Acids

18.45

Weight (kDa)

6.17

Isoelectric Point (pI)

56.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 143	8.1e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	297
AccI	GTMKAC	1 cut(s)	386
AciI	CCGC	2 cut(s)	379, 382
AfiI	CCNNNNNNNGG	1 cut(s)	165
AgsI	TTSAA	5 cut(s)	103, 185, 214, 404, 455
AhdI	GACNNNNNGTC	1 cut(s)	175
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	2 cut(s)	24, 193
AluI	AGCT	2 cut(s)	24, 193
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	138
AsuHPI	GGTGA	1 cut(s)	269
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	1 cut(s)	39
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	380
BlsI	GCNGC	1 cut(s)	381
BmeRI	GACNNNNNGTC	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	165
Bse21I	CCTNAGG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	114, 417
BseLI	CCNNNNNNNGG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	126, 186
BseSI	GKGCMC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	182, 221
BslI	CCNNNNNNNGG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	182, 221
BsnI	GGCC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	379, 382
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	2 cut(s)	127, 185
BspTNI	GGTCTC	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	60
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	257, 447
Bst6I	CTCTTC	3 cut(s)	12, 255, 282
BstDEI	CTNAG	2 cut(s)	135, 172
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	114, 417
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	39
BstZ17I	GTATAC	1 cut(s)	387
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	2 cut(s)	114, 417
BtsIMutI	CAGTG	1 cut(s)	443
CseI	GACGC	1 cut(s)	81
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	5 cut(s)	142, 221, 270, 318, 432
CviJI	RGCY	8 cut(s)	24, 81, 140, 158, 193, 337, 451, 458
CviKI_1	RGCY	8 cut(s)	24, 81, 140, 158, 193, 337, 451, 458
DdeI	CTNAG	2 cut(s)	135, 172
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DriI	GACNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	3 cut(s)	12, 255, 282
Eam1105I	GACNNNNNGTC	1 cut(s)	175
EarI	CTCTTC	3 cut(s)	12, 255, 282
Eco130I	CCWWGG	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	100
Eco81I	CCTNAGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	5 cut(s)	145, 224, 273, 321, 435
FaqI	GGGAC	2 cut(s)	182, 221
FatI	CATG	5 cut(s)	141, 220, 269, 317, 431
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	1 cut(s)	380
FokI	GGATG	2 cut(s)	101, 404
Fsp4HI	GCNGC	1 cut(s)	380
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	380
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	365
HgaI	GACGC	1 cut(s)	81
Hin1II	CATG	5 cut(s)	145, 224, 273, 321, 435
HinfI	GANTC	3 cut(s)	170, 176, 368
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	387, 443
Hpy188I	TCNGA	2 cut(s)	175, 373
Hpy188III	TCNNGA	2 cut(s)	103, 401
Hpy8I	GTNNAC	2 cut(s)	387, 443
HpyAV	CCTTC	5 cut(s)	4, 62, 247, 398, 407
HpyCH4III	ACNGT	2 cut(s)	257, 447
HpyCH4V	TGCA	3 cut(s)	317, 332, 431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	2 cut(s)	135, 172
Hsp92II	CATG	5 cut(s)	145, 224, 273, 321, 435
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	273
LpnPI	CCDG	5 cut(s)	18, 147, 342, 378, 403
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	6 cut(s)	16, 29, 91, 272, 299, 462
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	2 cut(s)	164, 185
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	44, 130, 159, 190, 256, 274, 283
MslI	CAYNNNNRTG	3 cut(s)	255, 426, 436
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	282
NcoI	CCATGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	5 cut(s)	145, 224, 273, 321, 435
NmuCI	GTSAC	1 cut(s)	392
OliI	CACNNNNGTG	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	381
PleI	GAGTC	2 cut(s)	164, 184
PpsI	GAGTC	2 cut(s)	164, 184
PsiI	TTATAA	1 cut(s)	297
RseI	CAYNNNNRTG	3 cut(s)	255, 426, 436
SatI	GCNGC	1 cut(s)	380
Sau3AI	GATC	1 cut(s)	60
SchI	GAGTC	2 cut(s)	164, 185
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	7 cut(s)	26, 195, 201, 294, 348, 392, 399
SmiMI	CAYNNNNRTG	3 cut(s)	255, 426, 436
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	2 cut(s)	379, 382
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	257, 447
TaqI	TCGA	1 cut(s)	123
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	382
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	1 cut(s)	450
TseFI	GTSAC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	2 cut(s)	17, 229
TspRI	CASTG	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	386
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.