Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

56255450 .. 56255737

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG329200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGTACTTGTCTCCGGAGGCTATACTGTACAATGAACAAGAGGAGCCAAGTGATATTTGGGCCTTGGGGTGCATCGTTCTTGAGATGCTCACCGGAGAGTGCCCTCGGAACCATTTTTACGATCATGAGAGTGACACCCTCTACGTTGTTGATGGAATGGTGCCTAAAATCCCGGATACAATCTCAAGTCTTGCAAGGGATTTTCTAGGTTGTTGCCTAGCCGAGGAAAGGTCCACAGCCGAAGAGCTTCTGTCTCATCCCTTTGTAGCAGAAGTTGTTAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

95

Amino Acids

10.73

Weight (kDa)

4.32

Isoelectric Point (pI)

53.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 89	2e-13	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 77	4.1e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	13
AfaI	GTAC	2 cut(s)	5, 29
AfiI	CCNNNNNNNGG	2 cut(s)	223, 228
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw26I	GTCTC	2 cut(s)	15, 258
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	60, 231
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	231
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	160
BccI	CCATC	1 cut(s)	146
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	2 cut(s)	15, 258
BfaI	CTAG	2 cut(s)	206, 218
BfuI	GTATCC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	2 cut(s)	60, 231
BmiI	GGNNCC	3 cut(s)	45, 110, 162
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	75, 81
BpuEI	CTTGAG	2 cut(s)	101, 169
BpuMI	CCSGG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	63, 104, 222
BsaWI	WCCGGW	2 cut(s)	13, 92
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 228
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	3 cut(s)	63, 104, 222
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	223, 228
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	14, 93, 173
BslI	CCNNNNNNNGG	2 cut(s)	223, 228
BsmAI	GTCTC	2 cut(s)	15, 258
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	13
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	124
BspLI	GGNNCC	3 cut(s)	45, 110, 162
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	27
BssECI	CCNNGG	3 cut(s)	63, 104, 222
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	2 cut(s)	15, 258
BstMBI	GATC	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	283
CciI	TCATGA	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	60, 231
Csp6I	GTAC	2 cut(s)	4, 28
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	6 cut(s)	20, 46, 62, 221, 239, 247
CviKI_1	RGCY	6 cut(s)	20, 46, 62, 221, 239, 247
CviQI	GTAC	2 cut(s)	4, 28
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	231
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	128
FaiI	YATR	2 cut(s)	23, 126
FatI	CATG	1 cut(s)	124
FokI	GGATG	1 cut(s)	243
FspBI	CTAG	2 cut(s)	206, 218
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	14, 93, 173
Hin1II	CATG	1 cut(s)	128
HpaII	CCGG	3 cut(s)	14, 93, 173
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	3 cut(s)	14, 80, 125
Hpy8I	GTNNAC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	72, 194
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	128
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	27, 106, 186
LweI	GCATC	2 cut(s)	75, 81
MaeI	CTAG	2 cut(s)	206, 218
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	10, 34, 114, 149, 217
MroI	TCCGGA	1 cut(s)	13
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	129
MspI	CCGG	3 cut(s)	14, 93, 173
MspR9I	CCNGG	1 cut(s)	173
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	1 cut(s)	128
NlaIV	GGNNCC	3 cut(s)	45, 110, 162
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	131
PagI	TCATGA	1 cut(s)	124
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	171
PspN4I	GGNNCC	3 cut(s)	45, 110, 162
PspPI	GGNCC	2 cut(s)	60, 231
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
RsaI	GTAC	2 cut(s)	5, 29
RsaNI	GTAC	2 cut(s)	4, 28
RseI	CAYNNNNRTG	1 cut(s)	129
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	60, 231
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	4 cut(s)	147, 211, 233, 249
SfaNI	GCATC	2 cut(s)	75, 81
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	2 cut(s)	80, 184
SmoI	CTYRAG	2 cut(s)	80, 184
SspMI	CTAG	2 cut(s)	206, 218
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	147
TatI	WGTACW	2 cut(s)	3, 27
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	131
TspDTI	ATGAA	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	231
XagI	CCTNNNNNAGG	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	206, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.