Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

55708895 .. 55714686

Gene Structure 5792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG384900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCTATGAAATCAGCAAAGATCAAGGATTCCGATTCCATTCGATACGAGCTGGAGGTGTATAGGGAGTTGATTAACGAGGGCTGTTCTTGCTCCTCCATCATTGAGCACTATGGTGAGGGGGTAACACGGAGTGATGAGGGTGAAGAGATCTATAACTTGGCCTTGGAAATAGCATGGGGAAGCCTTGCTAAGTTGATAGAGAAGACCGGTCATGGGTTGGGAGAATACCATGTAAGGCGGTATACCCGTGATATTCTTAAAGTTGGTGACTTGGGGCTGGCCAAGAAGGAGGAGGAGGTTCAGGAACGCTGGAGAGGCACACCCATGTACTTGTCTCCTGAAGCTGTAGAAGACAATGTCCAAGAACGACCCAGTGACATATGGGCTGTGGGGTGTATTGTTCTGGAAATGCTTACGGGAGAGTGCCCCCGGAATCATTTCTATGATGGTGAGAGTCGTACTCTCCACATTGTTGATGGAATGGAGCCAAAAATTCCTGATACGATCTCGAGTCAAGCTAAGGACTTTCTACAGCTTTGCCTAGCTACGGTTCCTGAGCAAAGGTGGACAGCTGAAGACCTTCAATCTCATCCCTTCGTGGCAAATCTTGAATTAGATAGTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

210

Amino Acids

23.82

Weight (kDa)

4.68

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	85 - 197	9.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	87 - 201	2.5e-22	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AciI	CCGC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	2 cut(s)	363, 597
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	332, 463
AfiI	CCNNNNNNNGG	2 cut(s)	216, 550
AgeI	ACCGGT	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	587, 614
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	6 cut(s)	52, 347, 521, 538, 548, 575
AluI	AGCT	6 cut(s)	52, 347, 521, 538, 548, 575
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	2 cut(s)	162, 282
ApoI	RAATTY	1 cut(s)	495
AsiGI	ACCGGT	1 cut(s)	209
Asp700I	GAANNNNTTC	2 cut(s)	440, 582
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	4 cut(s)	128, 155, 281, 464
AvaI	CYCGRG	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	431
BalI	TGGCCA	1 cut(s)	284
BbsI	GAAGAC	3 cut(s)	212, 360, 585
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	107, 443, 473
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	2 cut(s)	348, 533
BglII	AGATCT	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	489, 555
BmrFI	CCNGG	1 cut(s)	433
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	3 cut(s)	212, 360, 585
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	2 cut(s)	74, 334
Bpu10I	CCTNAGC	2 cut(s)	522, 558
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	2 cut(s)	165, 431
BsaWI	WCCGGW	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 550
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	375
BseDI	CCNNGG	2 cut(s)	165, 431
BseGI	GGATG	1 cut(s)	592
BseLI	CCNNNNNNNGG	2 cut(s)	216, 550
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	375
BseRI	GAGGAG	3 cut(s)	85, 308, 311
BseSI	GKGCMC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	164, 284
BshTI	ACCGGT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	210, 433
BslI	CCNNNNNNNGG	2 cut(s)	216, 550
BsmAI	GTCTC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	164, 284
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	2 cut(s)	111, 431
Bsp143I	GATC	3 cut(s)	21, 150, 507
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	2 cut(s)	164, 284
BspCNI	CTCAG	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	489, 555
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	375
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	165, 431
BssMI	GATC	3 cut(s)	21, 150, 507
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	3 cut(s)	192, 522, 558
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	3 cut(s)	24, 153, 510
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	3 cut(s)	21, 150, 507
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 318
BstSCI	CCNGG	1 cut(s)	431
BstSFI	CTRYAG	2 cut(s)	348, 533
BstSLI	GKGCMC	1 cut(s)	431
BstV2I	GAAGAC	3 cut(s)	212, 360, 585
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	2 cut(s)	164, 284
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	331, 462
CspAI	ACCGGT	1 cut(s)	209
CviAII	CATG	4 cut(s)	177, 215, 233, 328
CviQI	GTAC	2 cut(s)	331, 462
DdeI	CTNAG	3 cut(s)	192, 522, 558
DpnI	GATC	3 cut(s)	23, 152, 509
DpnII	GATC	3 cut(s)	21, 150, 507
DraIII	CACNNNGTG	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	363, 597
Eco88I	CYCGRG	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	180, 218, 236, 331
FatI	CATG	4 cut(s)	176, 214, 232, 327
FauNDI	CATATG	1 cut(s)	383
FblI	GTMKAC	1 cut(s)	245
FokI	GGATG	1 cut(s)	579
FspBI	CTAG	1 cut(s)	545
GsuI	CTGGAG	2 cut(s)	74, 334
HaeIII	GGCC	2 cut(s)	164, 284
HapII	CCGG	2 cut(s)	210, 433
Hin1II	CATG	4 cut(s)	180, 218, 236, 331
HinfI	GANTC	5 cut(s)	29, 35, 436, 457, 514
HpaII	CCGG	2 cut(s)	210, 433
HphI	GGTGA	4 cut(s)	128, 155, 281, 464
Hpy166II	GTNNAC	2 cut(s)	246, 570
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	7 cut(s)	305, 341, 407, 500, 511, 557, 611
Hpy8I	GTNNAC	2 cut(s)	246, 570
HpyAV	CCTTC	3 cut(s)	283, 593, 607
HpyCH4III	ACNGT	1 cut(s)	553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 318
HpyF3I	CTNAG	3 cut(s)	192, 522, 558
Hsp92II	CATG	4 cut(s)	180, 218, 236, 331
Kzo9I	GATC	3 cut(s)	21, 150, 507
LmnI	GCTCC	2 cut(s)	98, 487
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	3 cut(s)	124, 269, 377
MalI	GATC	3 cut(s)	23, 152, 509
MboI	GATC	3 cut(s)	21, 150, 507
MboII	GAAGA	4 cut(s)	158, 217, 365, 590
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	111, 431
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	3 cut(s)	495, 614, 628
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	466, 523
MnlI	CCTC	9 cut(s)	49, 73, 106, 112, 133, 286, 289, 292, 311
Mox20I	TGGCCA	1 cut(s)	284
MroXI	GAANNNNTTC	2 cut(s)	440, 582
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	75, 261
MslI	CAYNNNNRTG	3 cut(s)	114, 326, 444
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	210, 433
MspR9I	CCNGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	90, 318
NciI	CCSGG	1 cut(s)	433
NdeI	CATATG	1 cut(s)	383
NdeII	GATC	3 cut(s)	21, 150, 507
NlaIII	CATG	4 cut(s)	180, 218, 236, 331
NlaIV	GGNNCC	2 cut(s)	489, 555
NmuCI	GTSAC	2 cut(s)	269, 377
OliI	CACNNNNGTG	1 cut(s)	114
PaeR7I	CTCGAG	1 cut(s)	511
PdmI	GAANNNNTTC	2 cut(s)	440, 582
PfeI	GAWTC	3 cut(s)	29, 35, 436
PflFI	GACNNNGTC	1 cut(s)	359
PinAI	ACCGGT	1 cut(s)	209
PleI	GAGTC	2 cut(s)	465, 522
PpsI	GAGTC	2 cut(s)	465, 522
PspN4I	GGNNCC	2 cut(s)	489, 555
PsuI	RGATCY	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	359
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	332, 463
RsaNI	GTAC	2 cut(s)	331, 462
RseI	CAYNNNNRTG	3 cut(s)	114, 326, 444
SaqAI	TTAA	2 cut(s)	75, 261
Sau3AI	GATC	3 cut(s)	21, 150, 507
SchI	GAGTC	2 cut(s)	466, 523
ScrFI	CCNGG	1 cut(s)	433
SduI	GDGCHC	2 cut(s)	111, 431
SfcI	CTRYAG	2 cut(s)	348, 533
Sfr274I	CTCGAG	1 cut(s)	511
SlaI	CTCGAG	1 cut(s)	511
SmiMI	CAYNNNNRTG	3 cut(s)	114, 326, 444
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	3 cut(s)	495, 614, 628
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	43, 512
TasI	AATT	3 cut(s)	495, 614, 628
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	29, 35, 436
Tru1I	TTAA	2 cut(s)	75, 261
Tru9I	TTAA	2 cut(s)	75, 261
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	269, 377
Tsp45I	GTSAC	2 cut(s)	269, 377
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	495
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	245
XmnI	GAANNNNTTC	2 cut(s)	440, 582
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.