Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

32149773 .. 32154426

Gene Structure 4654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1267200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAAAGGAAGGCCGAAGAAGAAGAGCTGGGGAGGTTGTGGGGCGACGGCGAGGACTGGGAGAGAGGAGATTTGATCGGAGAAGGCTGTTTCGGGTCGGTTTTTCTTGCCTTTTCCAAGAAAAACAAACCCATTGTCAGTGATCGTCCACCACTGCCTCCGGTCATGGCTGTCAAATCTGCTGAGCTTTCCCATTCCGAGTCGATTCAGCACGAGACGGAGGTTCTCAGCTACGTAAAAGGCTCCGCTTTTGTGATTGATTGCTTGGGTGAAGAAATCACAACCAGTGAGGATGGCGATCAGATGGTCTACAATTTGCTGCTCGAATTTGCCGCAGGGGGAACCCTTGATGGCCTGATCAGGAGATTCAAGGGCCGGGGTTTGCCGGAATCCGATGTCATAAGTTACACAAGGTCAATTCTCCGAGGGTTGATACACATTCACGAGTGCGATTACGTCCACTGCGATTTAAAGCCGGAGAATATTTTGCTTGTGCCTGTTGCTAATACTGGAAGGTTTGTGGCCAAGGTCGCAGATTTGGGATTGGCTAAGAGAACCAAAGAGGATGTGGGAGGATGGAGAGGCACTCCGAGGTATACGGACCCGGATGCCTTGATGGATAATGTGCAAAATCAGTCCTCCGATATCTGGTCTGTTGGTGCCATTGTTCTTGAGATGTTAACAGGCAGCCCCCCTTGGGATGTGAAGCCCGGCTCCGATCTTGAAGACTTCTTGGACATGGTTTCTCAAGAAATTACCCCCAAAATTCCTCCCGGAATCTCAAGTGCGGCAAACGATTTTCTCAAGTGTTGCCTAGCCATCAATTCTTGGGAAAGGTTAACTGCCGAACAATTGTTGTTTCATCCATTCATAGCTGAGCCACAGGCATCCGAAGCATGTCATTCTTCTCTGGGCTATACCGTTGTTCCGAAAATTCAGCCCCCAGTAGGTTTAGTAATAACAGCCGGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

325

Amino Acids

35.48

Weight (kDa)

4.8

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	21 - 291	1.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 285	4.8e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	659
AccI	GTMKAC	2 cut(s)	309, 596
AciI	CCGC	3 cut(s)	246, 333, 788
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	3 cut(s)	326, 765, 933
AfiI	CCNNNNNNNGG	3 cut(s)	648, 697, 947
AgsI	TTSAA	2 cut(s)	370, 725
AluBI	AGCT	4 cut(s)	28, 187, 231, 875
AluI	AGCT	4 cut(s)	28, 187, 231, 875
Alw26I	GTCTC	1 cut(s)	209
AoxI	GGCC	4 cut(s)	12, 352, 373, 522
ApeKI	GCWGC	2 cut(s)	319, 687
ApoI	RAATTY	3 cut(s)	326, 765, 933
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AspS9I	GGNCC	2 cut(s)	373, 601
AsuC2I	CCSGG	4 cut(s)	377, 605, 711, 774
AsuHPI	GGTGA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	659
BauI	CACGAG	2 cut(s)	212, 443
BbsI	GAAGAC	1 cut(s)	732
BbvI	GCAGC	2 cut(s)	306, 699
BccI	CCATC	6 cut(s)	287, 298, 344, 570, 610, 827
BceAI	ACGGC	1 cut(s)	64
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	4 cut(s)	377, 605, 711, 774
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	815
BfmI	CTRYAG	1 cut(s)	971
BisI	GCNGC	4 cut(s)	320, 333, 688, 789
BlpI	GCTNAGC	2 cut(s)	183, 876
BlsI	GCNGC	4 cut(s)	321, 334, 689, 790
Bme1390I	CCNGG	4 cut(s)	377, 605, 711, 774
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	373, 601
BmiI	GGNNCC	5 cut(s)	244, 343, 603, 661, 715
BmrFI	CCNGG	4 cut(s)	377, 605, 711, 774
BmrI	ACTGGG	2 cut(s)	67, 938
BmsI	GCATC	2 cut(s)	598, 896
BmuI	ACTGGG	2 cut(s)	67, 938
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	571, 603
Bpu1102I	GCTNAGC	2 cut(s)	183, 876
BpuEI	CTTGAG	4 cut(s)	692, 732, 766, 788
BpuMI	CCSGG	4 cut(s)	377, 605, 711, 774
BsaAI	YACGTR	1 cut(s)	235
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	5 cut(s)	376, 424, 525, 590, 695
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	3 cut(s)	648, 697, 947
Bse1I	ACTGG	4 cut(s)	62, 285, 514, 944
Bse8I	GATNNNNATC	1 cut(s)	297
BseDI	CCNNGG	5 cut(s)	376, 424, 525, 590, 695
BseGI	GGATG	7 cut(s)	298, 571, 581, 613, 706, 862, 887
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	648, 697, 947
BseMII	CTCAG	3 cut(s)	174, 241, 867
BseNI	ACTGG	4 cut(s)	62, 285, 514, 944
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	306, 699
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	4 cut(s)	14, 354, 375, 524
BshNI	GGYRCC	1 cut(s)	659
BsiSI	CCGG	8 cut(s)	161, 376, 386, 476, 605, 711, 774, 966
BslI	CCNNNNNNNGG	3 cut(s)	648, 697, 947
BsmAI	GTCTC	1 cut(s)	209
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	4 cut(s)	14, 354, 375, 524
Bsp143I	GATC	5 cut(s)	75, 142, 298, 357, 718
Bsp1720I	GCTNAGC	2 cut(s)	183, 876
BspACI	CCGC	3 cut(s)	246, 333, 788
BspANI	GGCC	4 cut(s)	14, 354, 375, 524
BspCNI	CTCAG	3 cut(s)	175, 240, 868
BspLI	GGNNCC	5 cut(s)	244, 343, 603, 661, 715
BspQI	GCTCTTC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	659
BsrI	ACTGG	4 cut(s)	62, 285, 514, 944
BssECI	CCNNGG	5 cut(s)	376, 424, 525, 590, 695
BssMI	GATC	5 cut(s)	75, 142, 298, 357, 718
BssNAI	GTATAC	1 cut(s)	597
BssSI	CACGAG	2 cut(s)	212, 443
BssT1I	CCWWGG	2 cut(s)	525, 695
Bst1107I	GTATAC	1 cut(s)	597
Bst2BI	CACGAG	2 cut(s)	212, 443
Bst4CI	ACNGT	1 cut(s)	922
Bst6I	CTCTTC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	235
BstDEI	CTNAG	4 cut(s)	183, 227, 549, 876
BstF5I	GGATG	7 cut(s)	298, 571, 581, 613, 706, 862, 887
BstKTI	GATC	5 cut(s)	78, 145, 301, 360, 721
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	75, 142, 298, 357, 718
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 893
BstNSI	RCATGY	1 cut(s)	900
BstSCI	CCNGG	4 cut(s)	375, 603, 709, 772
BstSFI	CTRYAG	1 cut(s)	971
BstSNI	TACGTA	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	306, 699
BstV2I	GAAGAC	1 cut(s)	732
BstZ17I	GTATAC	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	14, 354, 375, 524
BtsCI	GGATG	7 cut(s)	298, 571, 581, 613, 706, 862, 887
BtsI	GCAGTG	2 cut(s)	152, 460
BtsIMutI	CAGTG	4 cut(s)	145, 152, 292, 460
Cfr13I	GGNCC	2 cut(s)	373, 601
CviAII	CATG	3 cut(s)	166, 739, 897
DdeI	CTNAG	4 cut(s)	183, 227, 549, 876
DpnI	GATC	5 cut(s)	77, 144, 300, 359, 720
DpnII	GATC	5 cut(s)	75, 142, 298, 357, 718
DraI	TTTAAA	1 cut(s)	471
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco105I	TACGTA	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	525, 695
Eco32I	GATATC	1 cut(s)	646
Eco47I	GGWCC	1 cut(s)	601
EcoRV	GATATC	1 cut(s)	646
EcoT14I	CCWWGG	2 cut(s)	525, 695
ErhI	CCWWGG	2 cut(s)	525, 695
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	3 cut(s)	169, 742, 900
FaiI	YATR	8 cut(s)	167, 401, 597, 740, 872, 898, 918, 973
FatI	CATG	3 cut(s)	165, 738, 896
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	309, 596
Fnu4HI	GCNGC	4 cut(s)	320, 333, 688, 789
FokI	GGATG	7 cut(s)	305, 578, 588, 620, 713, 849, 874
Fsp4HI	GCNGC	4 cut(s)	320, 333, 688, 789
FspBI	CTAG	1 cut(s)	815
GluI	GCNGC	4 cut(s)	320, 333, 688, 789
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	14, 354, 375, 524
HapII	CCGG	8 cut(s)	161, 376, 386, 476, 605, 711, 774, 966
Hin1II	CATG	3 cut(s)	169, 742, 900
HincII	GTYRAC	2 cut(s)	681, 840
HindII	GTYRAC	2 cut(s)	681, 840
HinfI	GANTC	5 cut(s)	200, 205, 366, 389, 777
HpaI	GTTAAC	2 cut(s)	681, 840
HpaII	CCGG	8 cut(s)	161, 376, 386, 476, 605, 711, 774, 966
HphI	GGTGA	1 cut(s)	281
Hpy166II	GTNNAC	6 cut(s)	149, 310, 460, 597, 681, 840
Hpy188III	TCNNGA	5 cut(s)	361, 443, 671, 722, 749
Hpy8I	GTNNAC	6 cut(s)	149, 310, 460, 597, 681, 840
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	4, 77, 507
HpyCH4III	ACNGT	1 cut(s)	922
HpyCH4IV	ACGT	2 cut(s)	234, 456
HpyCH4V	TGCA	1 cut(s)	628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 893
HpyF3I	CTNAG	4 cut(s)	183, 227, 549, 876
HpySE526I	ACGT	2 cut(s)	234, 456
Hsp92II	CATG	3 cut(s)	169, 742, 900
Ksp22I	TGATCA	1 cut(s)	357
KspAI	GTTAAC	2 cut(s)	681, 840
Kzo9I	GATC	5 cut(s)	75, 142, 298, 357, 718
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	248, 719
Lsp1109I	GCAGC	2 cut(s)	306, 699
LweI	GCATC	2 cut(s)	598, 896
MaeI	CTAG	1 cut(s)	815
MaeII	ACGT	2 cut(s)	234, 456
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	5 cut(s)	77, 144, 300, 359, 720
MboI	GATC	5 cut(s)	75, 142, 298, 357, 718
MboII	GAAGA	6 cut(s)	29, 32, 35, 284, 737, 897
MfeI	CAATTG	1 cut(s)	851
MlsI	TGGCCA	1 cut(s)	524
MluCI	AATT	8 cut(s)	313, 326, 417, 753, 765, 823, 851, 933
MluNI	TGGCCA	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	209
Mox20I	TGGCCA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	524
MseI	TTAA	3 cut(s)	470, 680, 839
Msp20I	TGGCCA	1 cut(s)	524
MspI	CCGG	8 cut(s)	161, 376, 386, 476, 605, 711, 774, 966
MspR9I	CCNGG	4 cut(s)	377, 605, 711, 774
MunI	CAATTG	1 cut(s)	851
MwoI	GCNNNNNNNGC	2 cut(s)	530, 893
NciI	CCSGG	4 cut(s)	377, 605, 711, 774
NdeII	GATC	5 cut(s)	75, 142, 298, 357, 718
NlaIII	CATG	3 cut(s)	169, 742, 900
NlaIV	GGNNCC	5 cut(s)	244, 343, 603, 661, 715
NspI	RCATGY	1 cut(s)	900
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	205, 366, 389, 777
PfoI	TCCNGGA	1 cut(s)	772
PkrI	GCNGC	4 cut(s)	321, 334, 689, 790
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	28
PspN4I	GGNNCC	5 cut(s)	244, 343, 603, 661, 715
PspPI	GGNCC	2 cut(s)	373, 601
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	470, 680, 839
SatI	GCNGC	4 cut(s)	320, 333, 688, 789
Sau3AI	GATC	5 cut(s)	75, 142, 298, 357, 718
Sau96I	GGNCC	2 cut(s)	373, 601
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	4 cut(s)	377, 605, 711, 774
SfaNI	GCATC	2 cut(s)	598, 896
SfcI	CTRYAG	1 cut(s)	971
SinI	GGWCC	1 cut(s)	601
SmlI	CTYRAG	4 cut(s)	671, 747, 781, 803
SmoI	CTYRAG	4 cut(s)	671, 747, 781, 803
SnaBI	TACGTA	1 cut(s)	235
Sse9I	AATT	8 cut(s)	313, 326, 417, 753, 765, 823, 851, 933
SsiI	CCGC	3 cut(s)	246, 333, 788
SspI	AATATT	1 cut(s)	484
SspMI	CTAG	1 cut(s)	815
StyD4I	CCNGG	4 cut(s)	375, 603, 709, 772
StyI	CCWWGG	2 cut(s)	525, 695
TaaI	ACNGT	1 cut(s)	922
TaiI	ACGT	2 cut(s)	237, 459
TaqI	TCGA	2 cut(s)	203, 324
TasI	AATT	8 cut(s)	313, 326, 417, 753, 765, 823, 851, 933
TauI	GCSGC	2 cut(s)	335, 791
TfiI	GAWTC	4 cut(s)	205, 366, 389, 777
Tru1I	TTAA	3 cut(s)	470, 680, 839
Tru9I	TTAA	3 cut(s)	470, 680, 839
TscAI	CASTG	4 cut(s)	145, 159, 292, 467
TseI	GCWGC	2 cut(s)	319, 687
TspDTI	ATGAA	3 cut(s)	17, 851, 859
TspGWI	ACGGA	2 cut(s)	233, 614
TspRI	CASTG	4 cut(s)	145, 159, 292, 467
VpaK11BI	GGWCC	1 cut(s)	601
XapI	RAATTY	3 cut(s)	326, 765, 933
XceI	RCATGY	1 cut(s)	900
XcmI	CCANNNNNNNNNTGG	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	309, 596
XspI	CTAG	1 cut(s)	815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.