Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

48444577 .. 48445446

Gene Structure 870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG267600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAAGAGGAAGGCGGAAGTGAGTTTTGGTTCAGGTTACAAGTGGATAAGAGGAAACAAGATCGGAGAAGGAGGCTTCGGCTCCGTGTTCGTTGCATTTTCCAAGAGACCCTATATCAAGATCGACCACATGCCCGTGGCCATGGCCATGAAATCGGCAAAGATCAAGGATTCAGATTCCATTCGATACGAGCTCGAGGTGTTTAGGGAGTTGAATAACAAGGGTGGTTCTTGCCCCTTCATCATTGAGCACTATGGGGAAGAGGTGACATGGAGTGACGACGGGGAAGAGGTCTATAACTTGGCCTTGGAAGTTGCATGGGGAAGCCTTGCGAGGCTGATAAAGATTATCAGTCATGGGTTGCCAGAATTCGATGTGAGGCGGTACACCGGCGACATTCTTGAAGGGGTTCGACACATACACAAGAGTGGGTATGTTCACTGTGATTTGAAACCAGATAATATCTTGCTTGTGGAAAATGAAGATGATAGTGCCTATCCCTTGGTAGCCAAAGTGGGTGACTTGGGGTTGGCCAAGAAGGAGGAGGTTCAAGAAAGGTGGAGAGGCACTCCCATGTACTTGTCTCCGGAGACTGTCTTGTACAATGAGCAAGAACAAGCCAGTGATATTTGGGCTGTGGGGTGTATTGTTCTTGAAATGCTTACTGGAGAGCGCCCCGGGAATCATTTCTACGATCATGAGAGCGATACTCTCTACATTGTTGATGGAATGGAGCCTAAAATTCCTGATACGATCTCGAGTCTTGCTAGGGAGTTTCTTGGGTTTTGCCTAGCCAAGGAAACTCCGGAAAGGTGGACAGCTGAAGAGCTTCTATCTCATCCCTTTGTGGCAAATGTTGTTAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

289

Amino Acids

32.78

Weight (kDa)

5.16

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 283	2.7e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 279	1.3e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	586, 805
AciI	CCGC	2 cut(s)	14, 382
AcoI	YGGCCR	3 cut(s)	138, 144, 531
AcsI	RAATTY	2 cut(s)	368, 741
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	4 cut(s)	386, 578, 602, 866
AfiI	CCNNNNNNNGG	1 cut(s)	796
AgsI	TTSAA	5 cut(s)	214, 404, 451, 551, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	193, 821, 829
AluI	AGCT	3 cut(s)	193, 821, 829
Alw21I	GWGCWC	2 cut(s)	195, 252
Alw26I	GTCTC	3 cut(s)	100, 584, 588
Ama87I	CYCGRG	3 cut(s)	194, 677, 757
Aor13HI	TCCGGA	2 cut(s)	586, 805
AoxI	GGCC	4 cut(s)	138, 144, 303, 531
ApoI	RAATTY	2 cut(s)	368, 741
Asp700I	GAANNNNTTC	3 cut(s)	408, 686, 828
AspLEI	GCGC	1 cut(s)	675
AsuC2I	CCSGG	2 cut(s)	678, 679
AsuHPI	GGTGA	2 cut(s)	277, 530
AvaI	CYCGRG	3 cut(s)	194, 677, 757
BalI	TGGCCA	3 cut(s)	140, 146, 533
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	195, 252
BccI	CCATC	1 cut(s)	719
BcnI	CCSGG	2 cut(s)	678, 679
BcoDI	GTCTC	3 cut(s)	100, 584, 588
BfaI	CTAG	2 cut(s)	768, 791
BfoI	RGCGCY	1 cut(s)	676
Bme1390I	CCNGG	2 cut(s)	678, 679
BmeT110I	CYCGRG	3 cut(s)	194, 677, 757
BmiI	GGNNCC	2 cut(s)	82, 735
BmrFI	CCNGG	2 cut(s)	678, 679
BplI	GAGNNNNNCTC	4 cut(s)	553, 585, 694, 726
BpmI	CTGGAG	1 cut(s)	687
BpuMI	CCSGG	2 cut(s)	678, 679
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	7 cut(s)	135, 141, 306, 501, 676, 677, 795
BsaWI	WCCGGW	2 cut(s)	586, 805
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	621, 670
BseAI	TCCGGA	2 cut(s)	586, 805
BseDI	CCNNGG	7 cut(s)	135, 141, 306, 501, 676, 677, 795
BseGI	GGATG	1 cut(s)	838
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseNI	ACTGG	2 cut(s)	621, 670
BseRI	GAGGAG	1 cut(s)	557
BshFI	GGCC	4 cut(s)	140, 146, 305, 533
BsiHKAI	GWGCWC	2 cut(s)	195, 252
BsiHKCI	CYCGRG	3 cut(s)	194, 677, 757
BsiSI	CCGG	4 cut(s)	390, 587, 678, 806
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	3 cut(s)	100, 584, 588
BsnI	GGCC	4 cut(s)	140, 146, 305, 533
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	3 cut(s)	194, 677, 757
Bsp1286I	GDGCHC	2 cut(s)	195, 252
Bsp13I	TCCGGA	2 cut(s)	586, 805
Bsp1407I	TGTACA	1 cut(s)	600
Bsp143I	GATC	5 cut(s)	60, 120, 162, 694, 753
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	2 cut(s)	14, 382
BspANI	GGCC	4 cut(s)	140, 146, 305, 533
BspEI	TCCGGA	2 cut(s)	586, 805
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	2 cut(s)	82, 735
BspQI	GCTCTTC	1 cut(s)	819
BspTNI	GGTCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	389
BsrGI	TGTACA	1 cut(s)	600
BsrI	ACTGG	2 cut(s)	621, 670
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	7 cut(s)	135, 141, 306, 501, 676, 677, 795
BssMI	GATC	5 cut(s)	60, 120, 162, 694, 753
BssT1I	CCWWGG	4 cut(s)	141, 306, 501, 795
Bst4CI	ACNGT	2 cut(s)	443, 595
Bst6I	CTCTTC	3 cut(s)	255, 282, 819
BstAUI	TGTACA	1 cut(s)	600
BstDSI	CCRYGG	2 cut(s)	135, 141
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	1 cut(s)	838
BstH2I	RGCGCY	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	675
BstKTI	GATC	5 cut(s)	63, 123, 165, 697, 756
BstMAI	GTCTC	3 cut(s)	100, 584, 588
BstMBI	GATC	5 cut(s)	60, 120, 162, 694, 753
BstNSI	RCATGY	1 cut(s)	133
BstSCI	CCNGG	2 cut(s)	676, 677
BsuRI	GGCC	4 cut(s)	140, 146, 305, 533
BtgI	CCRYGG	2 cut(s)	135, 141
BtsCI	GGATG	1 cut(s)	838
BtsIMutI	CAGTG	2 cut(s)	439, 628
CciI	TCATGA	1 cut(s)	697
CfoI	GCGC	1 cut(s)	675
Cfr10I	RCCGGY	1 cut(s)	389
Cfr9I	CCCGGG	1 cut(s)	677
Csp6I	GTAC	4 cut(s)	385, 577, 601, 865
CspCI	CAANNNNNGTGG	2 cut(s)	539, 574
CviAII	CATG	8 cut(s)	130, 142, 148, 270, 318, 356, 574, 698
CviQI	GTAC	4 cut(s)	385, 577, 601, 865
DpnI	GATC	5 cut(s)	62, 122, 164, 696, 755
DpnII	GATC	5 cut(s)	60, 120, 162, 694, 753
EaeI	YGGCCR	3 cut(s)	138, 144, 531
Eam1104I	CTCTTC	3 cut(s)	255, 282, 819
EarI	CTCTTC	3 cut(s)	255, 282, 819
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	4 cut(s)	141, 306, 501, 795
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	3 cut(s)	194, 677, 757
EcoICRI	GAGCTC	1 cut(s)	193
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	368
EcoT14I	CCWWGG	4 cut(s)	141, 306, 501, 795
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	4 cut(s)	141, 306, 501, 795
FaeI	CATG	8 cut(s)	133, 145, 151, 273, 321, 359, 577, 701
FatI	CATG	8 cut(s)	129, 141, 147, 269, 317, 355, 573, 697
FokI	GGATG	1 cut(s)	825
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	2 cut(s)	768, 791
GlaI	GCGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	687
HaeII	RGCGCY	1 cut(s)	676
HaeIII	GGCC	4 cut(s)	140, 146, 305, 533
HapII	CCGG	4 cut(s)	390, 587, 678, 806
HhaI	GCGC	1 cut(s)	675
Hin1II	CATG	8 cut(s)	133, 145, 151, 273, 321, 359, 577, 701
Hin6I	GCGC	1 cut(s)	673
HinP1I	GCGC	1 cut(s)	673
HinfI	GANTC	4 cut(s)	170, 176, 682, 760
HpaII	CCGG	4 cut(s)	390, 587, 678, 806
HphI	GGTGA	2 cut(s)	277, 530
Hpy166II	GTNNAC	3 cut(s)	387, 439, 816
Hpy188I	TCNGA	2 cut(s)	65, 175
Hpy188III	TCNNGA	9 cut(s)	118, 401, 551, 587, 653, 698, 746, 757, 806
Hpy8I	GTNNAC	3 cut(s)	387, 439, 816
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	5 cut(s)	4, 62, 247, 398, 532
HpyCH4III	ACNGT	2 cut(s)	443, 595
HpyCH4V	TGCA	2 cut(s)	95, 317
Hsp92II	CATG	8 cut(s)	133, 145, 151, 273, 321, 359, 577, 701
HspAI	GCGC	1 cut(s)	673
Kpn2I	TCCGGA	2 cut(s)	586, 805
Kzo9I	GATC	5 cut(s)	60, 120, 162, 694, 753
LguI	GCTCTTC	1 cut(s)	819
LmnI	GCTCC	2 cut(s)	86, 733
MaeI	CTAG	2 cut(s)	768, 791
MaeIII	GTNAC	4 cut(s)	35, 265, 275, 518
MalI	GATC	5 cut(s)	62, 122, 164, 696, 755
MboI	GATC	5 cut(s)	60, 120, 162, 694, 753
MboII	GAAGA	5 cut(s)	16, 272, 299, 494, 836
MhlI	GDGCHC	2 cut(s)	195, 252
MlsI	TGGCCA	3 cut(s)	140, 146, 533
MluCI	AATT	2 cut(s)	368, 741
MluNI	TGGCCA	3 cut(s)	140, 146, 533
MlyI	GAGTC	1 cut(s)	769
Mox20I	TGGCCA	3 cut(s)	140, 146, 533
MroI	TCCGGA	2 cut(s)	586, 805
MroXI	GAANNNNTTC	3 cut(s)	408, 686, 828
MscI	TGGCCA	3 cut(s)	140, 146, 533
MslI	CAYNNNNRTG	4 cut(s)	134, 146, 426, 572
Msp20I	TGGCCA	3 cut(s)	140, 146, 533
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	4 cut(s)	390, 587, 678, 806
MspR9I	CCNGG	2 cut(s)	678, 679
NciI	CCSGG	2 cut(s)	678, 679
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	5 cut(s)	60, 120, 162, 694, 753
NlaIII	CATG	8 cut(s)	133, 145, 151, 273, 321, 359, 577, 701
NlaIV	GGNNCC	2 cut(s)	82, 735
NmuCI	GTSAC	3 cut(s)	265, 275, 518
NspI	RCATGY	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	426
PaeR7I	CTCGAG	2 cut(s)	194, 757
PagI	TCATGA	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	819
PdmI	GAANNNNTTC	3 cut(s)	408, 686, 828
PfeI	GAWTC	3 cut(s)	170, 176, 682
PleI	GAGTC	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	82, 735
PspXI	VCTCGAGB	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	4 cut(s)	386, 578, 602, 866
RsaNI	GTAC	4 cut(s)	385, 577, 601, 865
RseI	CAYNNNNRTG	4 cut(s)	134, 146, 426, 572
SacI	GAGCTC	1 cut(s)	195
SapI	GCTCTTC	1 cut(s)	819
Sau3AI	GATC	5 cut(s)	60, 120, 162, 694, 753
SchI	GAGTC	1 cut(s)	769
ScrFI	CCNGG	2 cut(s)	678, 679
SduI	GDGCHC	2 cut(s)	195, 252
Sfr274I	CTCGAG	2 cut(s)	194, 757
SgrAI	CRCCGGYG	1 cut(s)	389
SlaI	CTCGAG	2 cut(s)	194, 757
SmaI	CCCGGG	1 cut(s)	679
SmiMI	CAYNNNNRTG	4 cut(s)	134, 146, 426, 572
SmlI	CTYRAG	2 cut(s)	194, 757
SmoI	CTYRAG	2 cut(s)	194, 757
Sse9I	AATT	2 cut(s)	368, 741
SsiI	CCGC	2 cut(s)	14, 382
SspMI	CTAG	2 cut(s)	768, 791
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	2 cut(s)	676, 677
StyI	CCWWGG	4 cut(s)	141, 306, 501, 795
TaaI	ACNGT	2 cut(s)	443, 595
TaqI	TCGA	6 cut(s)	123, 184, 195, 372, 412, 758
TasI	AATT	2 cut(s)	368, 741
TatI	WGTACW	2 cut(s)	576, 600
TfiI	GAWTC	3 cut(s)	170, 176, 682
TscAI	CASTG	2 cut(s)	446, 628
TseFI	GTSAC	3 cut(s)	265, 275, 518
Tsp45I	GTSAC	3 cut(s)	265, 275, 518
TspDTI	ATGAA	4 cut(s)	17, 164, 229, 495
TspGWI	ACGGA	1 cut(s)	73
TspMI	CCCGGG	1 cut(s)	677
TspRI	CASTG	2 cut(s)	446, 628
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	2 cut(s)	368, 741
XceI	RCATGY	1 cut(s)	133
XhoI	CTCGAG	2 cut(s)	194, 757
XmaI	CCCGGG	1 cut(s)	677
XmnI	GAANNNNTTC	3 cut(s)	408, 686, 828
XspI	CTAG	2 cut(s)	768, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.