Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

46346555 .. 46347508

Gene Structure 954 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG344500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAGGCCCTATATCATCTCCGATAATATGCCGAAGGCCATGGCTATGAAATCAGCAAAGATCAAGGATTCCGATTCCATTCGATACGAGCTGGAGGTGTTTAGGGAGTTGATTAACGAGGGCGGTTCTTGCTCCTCCATCATTGAGCACTATGGTGAGGAGGTAACACGGAGTGATGAGGGTGAAGAGATCTATAACTTGGCCTTGGAAATAGCATGGGGAAGCCTTGCTAAGTTGATAGAGAAGACCTTTTATGGGTTGGGAGAAAACCATGTAAGGCGGTATACCCGTGATATTCTTAAAGGTATTGAACACATACACAAGAGTGGGTATGTCCACTGTGATTTGAAACCAGATAACATCTTGCTTTTGAAAAATGAAGATTATATTGATCAATATCTCTGTCCCTATGTGGCCAAAGTTGGTGACTTGGGGCTGGCCAAGAAGGAGGAGGAGGTTCAGGAATGCTGGAGAGGCACACCCATGTACTTGTCTCCTGAAGCTTTAGAAGACAATGTCCAAGAACGACCCAGTGACATATGGGCTGTGGGGTGTATTGTTCTGGAAATGCTTACGGGAGAGTGCCCCCGGAATCATTTCTATGATGGTGAGAGTCGTACTCTCCACATTGTTGATGGAATGGAGCCAAAAATTCCTGATACGATCTCGAGTCAAGCTAAGGATTTTGTACAGCGTTGCCTAGCTATGGTTCCTGAGCAAAGGTGGACAGCTGAAGACCTTCAATCTCATCCCTTCGTGGCAAATCTTGAATTATTTTGTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

262

Amino Acids

30.02

Weight (kDa)

4.81

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 253	8.8e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	43 - 249	4.9e-21	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	2 cut(s)	123, 280
AcoI	YGGCCR	2 cut(s)	414, 438
AcsI	RAATTY	1 cut(s)	651
AcuI	CTGAAG	2 cut(s)	519, 753
AdeI	CACNNNGTG	1 cut(s)	173
AfaI	GTAC	3 cut(s)	488, 619, 690
AfiI	CCNNNNNNNGG	2 cut(s)	255, 706
AgsI	TTSAA	5 cut(s)	311, 349, 373, 743, 770
AleI	CACNNNNGTG	2 cut(s)	153, 324
AluBI	AGCT	5 cut(s)	91, 503, 677, 704, 731
AluI	AGCT	5 cut(s)	91, 503, 677, 704, 731
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	5 cut(s)	5, 36, 201, 414, 438
ApoI	RAATTY	1 cut(s)	651
Asp700I	GAANNNNTTC	2 cut(s)	596, 738
AspS9I	GGNCC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	4 cut(s)	167, 194, 437, 620
AvaI	CYCGRG	1 cut(s)	667
BaeGI	GKGCMC	1 cut(s)	587
BalI	TGGCCA	2 cut(s)	416, 440
BbsI	GAAGAC	3 cut(s)	251, 516, 741
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	3 cut(s)	146, 599, 629
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	1 cut(s)	701
BglII	AGATCT	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	667
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	2 cut(s)	645, 711
BmrFI	CCNGG	1 cut(s)	589
BmrI	ACTGGG	1 cut(s)	525
BmuI	ACTGGG	1 cut(s)	525
BpiI	GAAGAC	3 cut(s)	251, 516, 741
BplI	GAGNNNNNCTC	2 cut(s)	604, 636
BpmI	CTGGAG	2 cut(s)	113, 490
Bpu10I	CCTNAGC	2 cut(s)	678, 714
BpuMI	CCSGG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	39, 204, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 706
Bse1I	ACTGG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	39, 204, 587
BseGI	GGATG	1 cut(s)	748
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	255, 706
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	4 cut(s)	124, 173, 464, 467
BseSI	GKGCMC	1 cut(s)	587
BshFI	GGCC	5 cut(s)	7, 38, 203, 416, 440
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	2 cut(s)	255, 706
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	390
BsmI	GAATGC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	7, 38, 203, 416, 440
BsoBI	CYCGRG	1 cut(s)	667
Bsp1286I	GDGCHC	2 cut(s)	150, 587
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	4 cut(s)	60, 189, 391, 663
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	123, 280
BspANI	GGCC	5 cut(s)	7, 38, 203, 416, 440
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	645, 711
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	3 cut(s)	39, 204, 587
BssMI	GATC	4 cut(s)	60, 189, 391, 663
BssNAI	GTATAC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	39, 204
Bst1107I	GTATAC	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	231, 678, 714
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	4 cut(s)	63, 192, 394, 666
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	4 cut(s)	60, 189, 391, 663
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 474
BstSCI	CCNGG	1 cut(s)	587
BstSLI	GKGCMC	1 cut(s)	587
BstV2I	GAAGAC	3 cut(s)	251, 516, 741
BstX2I	RGATCY	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	189
BstZ17I	GTATAC	1 cut(s)	285
BsuRI	GGCC	5 cut(s)	7, 38, 203, 416, 440
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	337, 538
Cac8I	GCNNGC	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	6
Csp6I	GTAC	3 cut(s)	487, 618, 689
CviAII	CATG	4 cut(s)	40, 216, 272, 484
CviQI	GTAC	3 cut(s)	487, 618, 689
DdeI	CTNAG	3 cut(s)	231, 678, 714
DpnI	GATC	4 cut(s)	62, 191, 393, 665
DpnII	GATC	4 cut(s)	60, 189, 391, 663
DraIII	CACNNNGTG	1 cut(s)	173
EaeI	YGGCCR	2 cut(s)	414, 438
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	39, 204
Eco57I	CTGAAG	2 cut(s)	519, 753
Eco88I	CYCGRG	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	39, 204
ErhI	CCWWGG	2 cut(s)	39, 204
FaeI	CATG	4 cut(s)	43, 219, 275, 487
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	4 cut(s)	39, 215, 271, 483
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	284
FokI	GGATG	1 cut(s)	735
FspBI	CTAG	1 cut(s)	701
GsuI	CTGGAG	2 cut(s)	113, 490
HaeIII	GGCC	5 cut(s)	7, 38, 203, 416, 440
HapII	CCGG	1 cut(s)	589
Hin1II	CATG	4 cut(s)	43, 219, 275, 487
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	5 cut(s)	68, 74, 592, 613, 670
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	4 cut(s)	167, 194, 437, 620
Hpy166II	GTNNAC	3 cut(s)	285, 337, 726
Hpy188I	TCNGA	2 cut(s)	22, 73
Hpy188III	TCNNGA	7 cut(s)	461, 497, 563, 656, 667, 713, 767
Hpy8I	GTNNAC	3 cut(s)	285, 337, 726
HpyAV	CCTTC	4 cut(s)	28, 439, 749, 763
HpyCH4III	ACNGT	1 cut(s)	341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 474
HpyF3I	CTNAG	3 cut(s)	231, 678, 714
Hsp92II	CATG	4 cut(s)	43, 219, 275, 487
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	60, 189, 391, 663
LmnI	GCTCC	2 cut(s)	137, 643
MaeI	CTAG	1 cut(s)	701
MaeIII	GTNAC	3 cut(s)	163, 425, 533
MalI	GATC	4 cut(s)	62, 191, 393, 665
MboI	GATC	4 cut(s)	60, 189, 391, 663
MboII	GAAGA	5 cut(s)	197, 256, 392, 521, 746
MflI	RGATCY	1 cut(s)	189
MhlI	GDGCHC	2 cut(s)	150, 587
MlsI	TGGCCA	2 cut(s)	416, 440
MluCI	AATT	3 cut(s)	651, 770, 784
MluNI	TGGCCA	2 cut(s)	416, 440
MlyI	GAGTC	2 cut(s)	622, 679
Mox20I	TGGCCA	2 cut(s)	416, 440
MroXI	GAANNNNTTC	2 cut(s)	596, 738
MscI	TGGCCA	2 cut(s)	416, 440
MseI	TTAA	2 cut(s)	114, 300
MslI	CAYNNNNRTG	5 cut(s)	44, 153, 324, 482, 600
Msp20I	TGGCCA	2 cut(s)	416, 440
MspA1I	CMGCKG	1 cut(s)	731
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	589
Mva1269I	GAATGC	1 cut(s)	470
MwoI	GCNNNNNNNGC	2 cut(s)	129, 474
NciI	CCSGG	1 cut(s)	589
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	4 cut(s)	60, 189, 391, 663
NlaIII	CATG	4 cut(s)	43, 219, 275, 487
NlaIV	GGNNCC	2 cut(s)	645, 711
NmuCI	GTSAC	2 cut(s)	425, 533
OliI	CACNNNNGTG	2 cut(s)	153, 324
PaeR7I	CTCGAG	1 cut(s)	667
PctI	GAATGC	1 cut(s)	470
PdmI	GAANNNNTTC	2 cut(s)	596, 738
PfeI	GAWTC	3 cut(s)	68, 74, 592
PflFI	GACNNNGTC	1 cut(s)	515
PleI	GAGTC	2 cut(s)	621, 678
PpsI	GAGTC	2 cut(s)	621, 678
PspN4I	GGNNCC	2 cut(s)	645, 711
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	189
PsyI	GACNNNGTC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	731
RsaI	GTAC	3 cut(s)	488, 619, 690
RsaNI	GTAC	3 cut(s)	487, 618, 689
RseI	CAYNNNNRTG	5 cut(s)	44, 153, 324, 482, 600
SaqAI	TTAA	2 cut(s)	114, 300
Sau3AI	GATC	4 cut(s)	60, 189, 391, 663
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	2 cut(s)	622, 679
ScrFI	CCNGG	1 cut(s)	589
SduI	GDGCHC	2 cut(s)	150, 587
Sfr274I	CTCGAG	1 cut(s)	667
SlaI	CTCGAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	5 cut(s)	44, 153, 324, 482, 600
SmlI	CTYRAG	1 cut(s)	667
SmoI	CTYRAG	1 cut(s)	667
Sse9I	AATT	3 cut(s)	651, 770, 784
SsiI	CCGC	2 cut(s)	123, 280
SspMI	CTAG	1 cut(s)	701
StyD4I	CCNGG	1 cut(s)	587
StyI	CCWWGG	2 cut(s)	39, 204
TaaI	ACNGT	1 cut(s)	341
TaqI	TCGA	2 cut(s)	82, 668
TasI	AATT	3 cut(s)	651, 770, 784
TatI	WGTACW	2 cut(s)	486, 688
TfiI	GAWTC	3 cut(s)	68, 74, 592
Tru1I	TTAA	2 cut(s)	114, 300
Tru9I	TTAA	2 cut(s)	114, 300
TscAI	CASTG	2 cut(s)	344, 538
TseFI	GTSAC	2 cut(s)	425, 533
Tsp45I	GTSAC	2 cut(s)	425, 533
TspDTI	ATGAA	2 cut(s)	62, 393
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	344, 538
Tth111I	GACNNNGTC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	651
XcmI	CCANNNNNNNNNTGG	1 cut(s)	632
XhoI	CTCGAG	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	284
XmnI	GAANNNNTTC	2 cut(s)	596, 738
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.