Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

52212874 .. 52213272

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG321800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCATTTACATACACTTCACATGAAAACAAGATTAGACTCAAGCGTTAGCTCATGCAAGAAAGAAGAGAATGAATCAGATTCTCCCAACAGCTTTCAATCTGCAAATCATTTTAATTCTCCTACTTCACCAGCAGCAAAAGTATATGTGGTATCAGGAGAAGGAAAGGAAGGAAACTGGAGACCCTCTGAAACTTCACACTCAAAACCAGATCTAGACTCATGGTCAGTTACTTCTCTTTGGGAGACCAAAGAAATATCTCACCCTAACTTGTCTCCGGAGGCTATACTGTACAATGAACAGGAGGAGCCAAGTGATATTTGGGCCTTGGGGTGCATCGTTCTTGAGACGCTCACCGGAGAGTGCCCTCGGAAGTCGGAACCATTTTTACGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

5.16

Isoelectric Point (pI)

67.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	86 - 125	6.1e-06	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	277
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	98
AhdI	GACNNNNNGTC	1 cut(s)	223
AluBI	AGCT	2 cut(s)	51, 93
AluI	AGCT	2 cut(s)	51, 93
Alw26I	GTCTC	4 cut(s)	175, 239, 279, 341
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	120, 254, 346
BaeGI	GKGCMC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	146
BcoDI	GTCTC	4 cut(s)	175, 239, 279, 341
BfaI	CTAG	1 cut(s)	215
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	324
BmiI	GGNNCC	2 cut(s)	309, 381
BmsI	GCATC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	199
BpuEI	CTTGAG	2 cut(s)	25, 365
BsaI	GGTCTC	2 cut(s)	175, 239
BsaJI	CCNNGG	2 cut(s)	327, 368
BsaWI	WCCGGW	2 cut(s)	277, 356
Bse1I	ACTGG	1 cut(s)	182
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	327, 368
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	326
BsiSI	CCGG	2 cut(s)	278, 357
BsmAI	GTCTC	4 cut(s)	175, 239, 279, 341
BsmBI	CGTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	326
Bso31I	GGTCTC	2 cut(s)	175, 239
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp13I	TCCGGA	1 cut(s)	277
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	2 cut(s)	211, 392
BspANI	GGCC	1 cut(s)	326
BspEI	TCCGGA	1 cut(s)	277
BspHI	TCATGA	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	309, 381
BspTNI	GGTCTC	2 cut(s)	175, 239
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	327, 368
BssMI	GATC	2 cut(s)	211, 392
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	60
BstAUI	TGTACA	1 cut(s)	291
BstKTI	GATC	2 cut(s)	214, 395
BstMAI	GTCTC	4 cut(s)	175, 239, 279, 341
BstMBI	GATC	2 cut(s)	211, 392
BstSLI	GKGCMC	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	326
CciI	TCATGA	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	324
CseI	GACGC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	4 cut(s)	22, 54, 222, 396
CviJI	RGCY	5 cut(s)	51, 93, 284, 310, 326
CviKI_1	RGCY	5 cut(s)	51, 93, 284, 310, 326
CviQI	GTAC	1 cut(s)	292
DpnI	GATC	2 cut(s)	213, 394
DpnII	GATC	2 cut(s)	211, 392
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	60
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	60
Eco130I	CCWWGG	1 cut(s)	327
Eco31I	GGTCTC	2 cut(s)	175, 239
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	327
Esp3I	CGTCTC	1 cut(s)	341
FaeI	CATG	4 cut(s)	25, 57, 225, 399
FaiI	YATR	8 cut(s)	12, 23, 55, 145, 147, 223, 287, 397
FatI	CATG	4 cut(s)	21, 53, 221, 395
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	2 cut(s)	278, 357
HgaI	GACGC	1 cut(s)	358
Hin1II	CATG	4 cut(s)	25, 57, 225, 399
HinfI	GANTC	4 cut(s)	38, 74, 80, 218
HpaII	CCGG	2 cut(s)	278, 357
HphI	GGTGA	3 cut(s)	120, 254, 346
Hpy188I	TCNGA	4 cut(s)	79, 190, 372, 379
Hpy188III	TCNNGA	5 cut(s)	156, 215, 278, 344, 396
HpyAV	CCTTC	2 cut(s)	155, 164
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	4 cut(s)	4, 57, 104, 336
Hsp92II	CATG	4 cut(s)	25, 57, 225, 399
Kpn2I	TCCGGA	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	211, 392
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	7 cut(s)	141, 144, 163, 222, 287, 291, 370
Lsp1109I	GCAGC	1 cut(s)	146
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	2 cut(s)	213, 394
MboI	GATC	2 cut(s)	211, 392
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	1 cut(s)	115
MlyI	GAGTC	2 cut(s)	32, 212
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	4 cut(s)	196, 274, 298, 378
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	277
MseI	TTAA	1 cut(s)	114
MspI	CCGG	2 cut(s)	278, 357
NdeII	GATC	2 cut(s)	211, 392
NlaIII	CATG	4 cut(s)	25, 57, 225, 399
NlaIV	GGNNCC	2 cut(s)	309, 381
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	74, 80
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	2 cut(s)	32, 212
PpsI	GAGTC	2 cut(s)	32, 212
PspN4I	GGNNCC	2 cut(s)	309, 381
PspPI	GGNCC	1 cut(s)	324
PsrI	GAACNNNNNNTAC	1 cut(s)	372
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	211, 392
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	2 cut(s)	32, 212
SduI	GDGCHC	1 cut(s)	368
SetI	ASST	2 cut(s)	53, 95
SfaNI	GCATC	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	40, 344
SmoI	CTYRAG	2 cut(s)	40, 344
Sse9I	AATT	1 cut(s)	115
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	291
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	2 cut(s)	74, 80
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	38, 87, 312
XbaI	TCTAGA	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.