Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

52355853 .. 52356191

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG335000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGTCAGTTACTTCTCTTTGGGAGACCAAAGAAATATCTCATCCTAACTTGTCTCCGGAGGCTATACTGTACAATGAACAAGGGGAGCCGAGTGATATTTGGGCCTTGGGGTGCATCGTTCTTGAGATGCTCACCGGAGAGTGCCCTCGGAAGTCGGAACCATTTTTACGATCATGAGAGTGACACCCTCTACGTTGTTGATGGAATGGTGCCTAAAATCCCGGATACAATCTCAAGTCTTGCAAGGGATTTTCTAGGTTGTTGCCTAGCCGAGGAAAGGTCCACAGCCGAAGAGCTTCTGTCTCATCCCTTTGTAGCAGATATTGTTAAACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

112

Amino Acids

12.61

Weight (kDa)

7.67

Isoelectric Point (pI)

51.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	57
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	274, 279
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	19, 59, 309
Aor13HI	TCCGGA	1 cut(s)	57
AoxI	GGCC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	104, 282
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	211
BccI	CCATC	1 cut(s)	197
BciVI	GTATCC	1 cut(s)	220
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	3 cut(s)	19, 59, 309
BfaI	CTAG	2 cut(s)	257, 269
BfuI	GTATCC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	104, 282
BmiI	GGNNCC	3 cut(s)	89, 161, 213
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	119, 125
BpuEI	CTTGAG	2 cut(s)	145, 220
BpuMI	CCSGG	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	107, 148, 273
BsaWI	WCCGGW	2 cut(s)	57, 136
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 279
BseAI	TCCGGA	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	107, 148, 273
BseGI	GGATG	2 cut(s)	42, 307
BseLI	CCNNNNNNNGG	2 cut(s)	274, 279
BseSI	GKGCMC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	106
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	58, 137, 224
BslI	CCNNNNNNNGG	2 cut(s)	274, 279
BsmAI	GTCTC	3 cut(s)	19, 59, 309
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp13I	TCCGGA	1 cut(s)	57
Bsp1407I	TGTACA	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	172
BspANI	GGCC	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	89, 161, 213
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	71
BssECI	CCNNGG	3 cut(s)	107, 148, 273
BssMI	GATC	1 cut(s)	172
BssT1I	CCWWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	288
BstAUI	TGTACA	1 cut(s)	71
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	42, 307
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	3 cut(s)	19, 59, 309
BstMBI	GATC	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	42, 307
BtsIMutI	CAGTG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	104, 282
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	64, 90, 106, 272, 290, 298
CviKI_1	RGCY	6 cut(s)	64, 90, 106, 272, 290, 298
CviQI	GTAC	1 cut(s)	72
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	107
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	1 cut(s)	179
FaiI	YATR	2 cut(s)	67, 177
FatI	CATG	1 cut(s)	175
FokI	GGATG	2 cut(s)	29, 294
FspBI	CTAG	2 cut(s)	257, 269
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	3 cut(s)	58, 137, 224
Hin1II	CATG	1 cut(s)	179
HpaII	CCGG	3 cut(s)	58, 137, 224
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	2 cut(s)	152, 159
Hpy188III	TCNNGA	3 cut(s)	58, 124, 176
Hpy8I	GTNNAC	1 cut(s)	285
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	116, 245
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	179
Kpn2I	TCCGGA	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	71, 150, 237
LweI	GCATC	2 cut(s)	119, 125
MaeI	CTAG	2 cut(s)	257, 269
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	9, 182
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	4 cut(s)	54, 158, 200, 268
MroI	TCCGGA	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	3 cut(s)	58, 137, 224
MspR9I	CCNGG	1 cut(s)	224
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	3 cut(s)	89, 161, 213
NmeAIII	GCCGAG	2 cut(s)	116, 298
NmuCI	GTSAC	1 cut(s)	182
PagI	TCATGA	1 cut(s)	175
PciSI	GCTCTTC	1 cut(s)	288
PdmI	GAANNNNTTC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	222
PspN4I	GGNNCC	3 cut(s)	89, 161, 213
PspPI	GGNCC	2 cut(s)	104, 282
PsrI	GAACNNNNNNTAC	2 cut(s)	152, 184
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	104, 282
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	4 cut(s)	198, 262, 284, 300
SfaNI	GCATC	2 cut(s)	119, 125
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	124, 235
SmoI	CTYRAG	2 cut(s)	124, 235
SspMI	CTAG	2 cut(s)	257, 269
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	107
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	282
XagI	CCTNNNNNAGG	1 cut(s)	272
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	257, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.