Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

46554255 .. 46555247

Gene Structure 993 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG345400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGAGGAAGGCGGAAGTGAGCTTGGGTTCAGATCATAAGTGGCGGAGAGGAAACAAGATCGGCGAAGGAGGCTTGGGTTCAGGTCATAAGTTGCGGGGAGGAAAGAAGATCGGCAAAAGAGGCTTGGGTTCAGGTCATAAGTGGCGGAGAGGAAAGAAGATCGGCGAAGGACGCTTCGGTTCTGTGTTCATTGCGTTTTCCATGACGCCCTATATCATCTCCGATCATATGCCGAAGGCCATGGCTATGAAATCAGCAAAGATCAAGGATTCGGATTCCATTCGATACGAGCTGGAGGTGTTTAGGGAGTTGATTAACGAGGGCGGTTCTTGCTCCTCCATCATTGAGCACTATGGTGAGGAGGTAACACGGAGTGATGAGGGTGAAGAGATCTATAACTTGGCCTTGGAAATAGCATGGGGAAGCCTTGCTAAGTTGATAGAGAAGACCGGTCATGGGTTGGGAGAATACCATGTAAGGCGGTATACCCGTGATATTCTTAAAGGTATTAAACACATACACAAGAGTGGGTATGTCCACTGTGATTTGAAACCAGATAACATCTTGCTTTTGAAAACTGAGGATTATATTGATCAATATTTCTGTCCCTATGCGGCCAAAGTTGGTGACTTGGGGCTGGCCAAGAAGGAGGAGGAGGTTCAGGAACACTGGAGAGGCACACCCATGTACTTGTCTCCTGAAGCTGTAGAAGACAATGTCCAAGAACGACCCAGTGACATATGGGCTGTGGGGTGTATTGTTCTGGAAATGCTTACGGGAGAGTGCCCCCGGAATCATTTCTATGATGGTGAGAGTCGTACTCTCTACATTGTTGATGGAATGGAGCCAAAAATTCCTGATACGATCTCGAGTCAAGCTAAGGATTTTCTACAGCGTTGCCTAGCTAAGGTTCCTGAGCAAAGGTGGACAGCTGAAGACCTTCAATCTCATCCCTTCGTGACAAATCTTGAATTATTTTGTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

330

Amino Acids

37.38

Weight (kDa)

6.68

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	50 - 321	1.5e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	52 - 317	1.3e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	488
AciI	CCGC	7 cut(s)	14, 46, 97, 148, 327, 484, 617
AcoI	YGGCCR	2 cut(s)	618, 642
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	2 cut(s)	723, 957
AcyI	GRCGYC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	692, 823
AfiI	CCNNNNNNNGG	2 cut(s)	459, 910
AgeI	ACCGGT	1 cut(s)	452
AgsI	TTSAA	4 cut(s)	553, 577, 947, 974
AleI	CACNNNNGTG	2 cut(s)	357, 528
AluBI	AGCT	6 cut(s)	24, 295, 707, 881, 908, 935
AluI	AGCT	6 cut(s)	24, 295, 707, 881, 908, 935
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	1 cut(s)	702
Ama87I	CYCGRG	1 cut(s)	871
AoxI	GGCC	4 cut(s)	240, 405, 618, 642
ApoI	RAATTY	1 cut(s)	855
AsiGI	ACCGGT	1 cut(s)	452
Asp700I	GAANNNNTTC	2 cut(s)	800, 942
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	4 cut(s)	371, 398, 641, 824
AvaI	CYCGRG	1 cut(s)	871
BaeGI	GKGCMC	1 cut(s)	791
BalI	TGGCCA	1 cut(s)	644
BbsI	GAAGAC	3 cut(s)	455, 720, 945
Bbv12I	GWGCWC	1 cut(s)	354
BccI	CCATC	3 cut(s)	350, 803, 833
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	1 cut(s)	702
BfaI	CTAG	1 cut(s)	905
BfmI	CTRYAG	2 cut(s)	708, 893
BglII	AGATCT	1 cut(s)	393
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	871
BmiI	GGNNCC	2 cut(s)	849, 915
BmrFI	CCNGG	1 cut(s)	793
BmrI	ACTGGG	1 cut(s)	729
BmuI	ACTGGG	1 cut(s)	729
BpiI	GAAGAC	3 cut(s)	455, 720, 945
BplI	GAGNNNNNCTC	2 cut(s)	808, 840
BpmI	CTGGAG	2 cut(s)	317, 694
Bpu10I	CCTNAGC	3 cut(s)	882, 909, 918
BpuMI	CCSGG	1 cut(s)	793
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	243, 408, 791
BsaWI	WCCGGW	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	2 cut(s)	459, 910
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	2 cut(s)	677, 735
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	3 cut(s)	243, 408, 791
BseGI	GGATG	1 cut(s)	952
BseLI	CCNNNNNNNGG	2 cut(s)	459, 910
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	573, 909
BseNI	ACTGG	2 cut(s)	677, 735
BseRI	GAGGAG	4 cut(s)	328, 377, 668, 671
BseSI	GKGCMC	1 cut(s)	791
BshFI	GGCC	4 cut(s)	242, 407, 620, 644
BshTI	ACCGGT	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	354
BsiHKCI	CYCGRG	1 cut(s)	871
BsiSI	CCGG	2 cut(s)	453, 793
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	2 cut(s)	459, 910
BsmAI	GTCTC	1 cut(s)	702
BsmFI	GGGAC	1 cut(s)	594
BsnI	GGCC	4 cut(s)	242, 407, 620, 644
BsoBI	CYCGRG	1 cut(s)	871
Bsp1286I	GDGCHC	2 cut(s)	354, 791
Bsp143I	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	7 cut(s)	14, 46, 97, 148, 327, 484, 617
BspANI	GGCC	4 cut(s)	242, 407, 620, 644
BspCNI	CTCAG	2 cut(s)	574, 910
BspLI	GGNNCC	2 cut(s)	849, 915
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	677, 735
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	243, 408, 791
BssMI	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
BssNAI	GTATAC	1 cut(s)	489
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	243, 408
Bst1107I	GTATAC	1 cut(s)	489
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	5 cut(s)	435, 582, 882, 909, 918
BstDSI	CCRYGG	1 cut(s)	243
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	1 cut(s)	952
BstKTI	GATC	9 cut(s)	37, 63, 114, 165, 229, 267, 396, 598, 870
BstMAI	GTCTC	1 cut(s)	702
BstMBI	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 123, 174, 333
BstSCI	CCNGG	1 cut(s)	791
BstSFI	CTRYAG	2 cut(s)	708, 893
BstSLI	GKGCMC	1 cut(s)	791
BstV2I	GAAGAC	3 cut(s)	455, 720, 945
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	242, 407, 620, 644
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	952
BtsIMutI	CAGTG	3 cut(s)	541, 670, 742
Cac8I	GCNNGC	1 cut(s)	642
Cfr10I	RCCGGY	1 cut(s)	452
CseI	GACGC	2 cut(s)	183, 217
Csp6I	GTAC	2 cut(s)	691, 822
CspAI	ACCGGT	1 cut(s)	452
CviAII	CATG	6 cut(s)	205, 244, 420, 458, 476, 688
CviQI	GTAC	2 cut(s)	691, 822
DdeI	CTNAG	5 cut(s)	435, 582, 882, 909, 918
DpnI	GATC	9 cut(s)	36, 62, 113, 164, 228, 266, 395, 597, 869
DpnII	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
DraIII	CACNNNGTG	1 cut(s)	377
EaeI	YGGCCR	2 cut(s)	618, 642
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EciI	GGCGGA	3 cut(s)	29, 61, 163
Eco130I	CCWWGG	2 cut(s)	243, 408
Eco57I	CTGAAG	2 cut(s)	723, 957
Eco88I	CYCGRG	1 cut(s)	871
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoT14I	CCWWGG	2 cut(s)	243, 408
ErhI	CCWWGG	2 cut(s)	243, 408
FaeI	CATG	6 cut(s)	208, 247, 423, 461, 479, 691
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	6 cut(s)	204, 243, 419, 457, 475, 687
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	2 cut(s)	231, 743
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	488
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	1 cut(s)	939
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	1 cut(s)	905
GluI	GCNGC	1 cut(s)	618
GsuI	CTGGAG	2 cut(s)	317, 694
HaeIII	GGCC	4 cut(s)	242, 407, 620, 644
HapII	CCGG	2 cut(s)	453, 793
HgaI	GACGC	2 cut(s)	183, 217
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	6 cut(s)	208, 247, 423, 461, 479, 691
HinfI	GANTC	5 cut(s)	272, 278, 796, 817, 874
HpaII	CCGG	2 cut(s)	453, 793
HphI	GGTGA	4 cut(s)	371, 398, 641, 824
Hpy166II	GTNNAC	3 cut(s)	489, 541, 930
Hpy188I	TCNGA	3 cut(s)	34, 226, 277
Hpy188III	TCNNGA	8 cut(s)	665, 701, 767, 860, 871, 917, 961, 971
Hpy8I	GTNNAC	3 cut(s)	489, 541, 930
HpyAV	CCTTC	7 cut(s)	4, 62, 164, 232, 643, 953, 967
HpyCH4III	ACNGT	1 cut(s)	545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 123, 174, 333
HpyF3I	CTNAG	5 cut(s)	435, 582, 882, 909, 918
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	6 cut(s)	208, 247, 423, 461, 479, 691
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
LmnI	GCTCC	2 cut(s)	341, 847
MaeI	CTAG	1 cut(s)	905
MaeIII	GTNAC	4 cut(s)	367, 629, 737, 961
MalI	GATC	9 cut(s)	36, 62, 113, 164, 228, 266, 395, 597, 869
MboI	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
MboII	GAAGA	7 cut(s)	16, 121, 172, 401, 460, 725, 950
MflI	RGATCY	1 cut(s)	393
MhlI	GDGCHC	2 cut(s)	354, 791
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	3 cut(s)	855, 974, 988
MluNI	TGGCCA	1 cut(s)	644
MlyI	GAGTC	2 cut(s)	826, 883
Mox20I	TGGCCA	1 cut(s)	644
MroXI	GAANNNNTTC	2 cut(s)	800, 942
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	3 cut(s)	318, 504, 513
MslI	CAYNNNNRTG	5 cut(s)	248, 357, 528, 686, 804
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	935
MspI	CCGG	2 cut(s)	453, 793
MspR9I	CCNGG	1 cut(s)	793
MwoI	GCNNNNNNNGC	4 cut(s)	72, 123, 174, 333
NciI	CCSGG	1 cut(s)	793
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	2 cut(s)	231, 743
NdeII	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
NlaIII	CATG	6 cut(s)	208, 247, 423, 461, 479, 691
NlaIV	GGNNCC	2 cut(s)	849, 915
NmuCI	GTSAC	3 cut(s)	629, 737, 961
OliI	CACNNNNGTG	2 cut(s)	357, 528
PaeR7I	CTCGAG	1 cut(s)	871
PdmI	GAANNNNTTC	2 cut(s)	800, 942
PfeI	GAWTC	3 cut(s)	272, 278, 796
PflFI	GACNNNGTC	1 cut(s)	719
PinAI	ACCGGT	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	619
PleI	GAGTC	2 cut(s)	825, 882
PpsI	GAGTC	2 cut(s)	825, 882
PspN4I	GGNNCC	2 cut(s)	849, 915
PsuI	RGATCY	1 cut(s)	393
PsyI	GACNNNGTC	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	935
RsaI	GTAC	2 cut(s)	692, 823
RsaNI	GTAC	2 cut(s)	691, 822
RseI	CAYNNNNRTG	5 cut(s)	248, 357, 528, 686, 804
SaqAI	TTAA	3 cut(s)	318, 504, 513
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	9 cut(s)	34, 60, 111, 162, 226, 264, 393, 595, 867
SchI	GAGTC	2 cut(s)	826, 883
ScrFI	CCNGG	1 cut(s)	793
SduI	GDGCHC	2 cut(s)	354, 791
SfcI	CTRYAG	2 cut(s)	708, 893
Sfr274I	CTCGAG	1 cut(s)	871
SlaI	CTCGAG	1 cut(s)	871
SmiMI	CAYNNNNRTG	5 cut(s)	248, 357, 528, 686, 804
SmlI	CTYRAG	1 cut(s)	871
SmoI	CTYRAG	1 cut(s)	871
Sse9I	AATT	3 cut(s)	855, 974, 988
SsiI	CCGC	7 cut(s)	14, 46, 97, 148, 327, 484, 617
SspI	AATATT	1 cut(s)	602
SspMI	CTAG	1 cut(s)	905
StyD4I	CCNGG	1 cut(s)	791
StyI	CCWWGG	2 cut(s)	243, 408
TaaI	ACNGT	1 cut(s)	545
TaqI	TCGA	2 cut(s)	286, 872
TasI	AATT	3 cut(s)	855, 974, 988
TatI	WGTACW	1 cut(s)	690
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	3 cut(s)	272, 278, 796
Tru1I	TTAA	3 cut(s)	318, 504, 513
Tru9I	TTAA	3 cut(s)	318, 504, 513
TscAI	CASTG	3 cut(s)	548, 677, 742
TseFI	GTSAC	3 cut(s)	629, 737, 961
Tsp45I	GTSAC	3 cut(s)	629, 737, 961
TspDTI	ATGAA	3 cut(s)	17, 181, 266
TspGWI	ACGGA	1 cut(s)	388
TspRI	CASTG	3 cut(s)	548, 677, 742
Tth111I	GACNNNGTC	1 cut(s)	719
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	1 cut(s)	855
XhoI	CTCGAG	1 cut(s)	871
XmiI	GTMKAC	1 cut(s)	488
XmnI	GAANNNNTTC	2 cut(s)	800, 942
XspI	CTAG	1 cut(s)	905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.