Rorug02G0309700

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
35496653 .. 35496895
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0309700.1

Sequence Viewer

Length: 243 bp
ATGAATTTGATTCAGTGGACGATGAGGTTGTTGGAGGATTTTCATAAATATCATCCCAAAGCAGTTAGGAAAAAGAGCAGGCCAAAGGTTAAGTGGCAGTGTCCACCGAGTGGAAGACTTAAAATTAATGTTGATGGGGCTTATTGCTTGGAGGATGGTCGTGGTGGTATTGGAGTAATGGTGAGGGATGACTTTGGCATGGGTATTGCTGCTTTGGCTAGACCTTTTGTACATGCACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

80

Amino Acids

9.12

Weight (kDa)

9.93

Isoelectric Point (pI)

23.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AcsI RAATTY 1 cut(s) 4
AdeI CACNNNGTG 1 cut(s) 110
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 110
AoxI GGCC 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 128, 149
BfaI CTAG 2 cut(s) 219, 241
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
BpiI GAAGAC 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseGI GGATG 3 cut(s) 52, 160, 193
BseLI CCNNNNNNNGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 110
BsnI GGCC 1 cut(s) 82
Bsp1407I TGTACA 1 cut(s) 229
BspANI GGCC 1 cut(s) 82
BsrGI TGTACA 1 cut(s) 229
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 80
BstF5I GGATG 3 cut(s) 52, 160, 193
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 236
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 82
BtsCI GGATG 3 cut(s) 52, 160, 193
BtsI GCAGTG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 20, 104
Cac8I GCNNGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 230
CviAII CATG 2 cut(s) 199, 233
CviJI RGCY 3 cut(s) 82, 140, 218
CviKI_1 RGCY 3 cut(s) 82, 140, 218
CviQI GTAC 1 cut(s) 230
DraIII CACNNNGTG 1 cut(s) 110
FaeI CATG 2 cut(s) 202, 236
FaiI YATR 3 cut(s) 45, 200, 234
FatI CATG 2 cut(s) 198, 232
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 3 cut(s) 39, 167, 200
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 2 cut(s) 219, 241
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 82
Hin1II CATG 2 cut(s) 202, 236
HinfI GANTC 1 cut(s) 10
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 18, 104
Hpy8I GTNNAC 2 cut(s) 18, 104
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
Hsp92II CATG 2 cut(s) 202, 236
LpnPI CCDG 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 2 cut(s) 219, 241
MboII GAAGA 1 cut(s) 126
MluCI AATT 2 cut(s) 4, 123
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 4 cut(s) 18, 28, 145, 177
MseI TTAA 3 cut(s) 90, 120, 126
MwoI GCNNNNNNNGC 1 cut(s) 215
NlaIII CATG 2 cut(s) 202, 236
NspI RCATGY 1 cut(s) 236
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 126
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
SaqAI TTAA 3 cut(s) 90, 120, 126
SatI GCNGC 1 cut(s) 210
SetI ASST 3 cut(s) 29, 90, 226
SgeI CNNG 6 cut(s) 91, 120, 160, 173, 211, 231
Sse9I AATT 2 cut(s) 4, 123
SspMI CTAG 2 cut(s) 219, 241
TasI AATT 2 cut(s) 4, 123
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 3 cut(s) 90, 120, 126
Tru9I TTAA 3 cut(s) 90, 120, 126
TscAI CASTG 2 cut(s) 20, 104
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 17, 32
TspRI CASTG 2 cut(s) 20, 104
Van91I CCANNNNNTGG 1 cut(s) 110
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 1 cut(s) 90
XspI CTAG 2 cut(s) 219, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.