Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

18368717 .. 18371540

Gene Structure 2824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTTGACCATGATTTGGACGAATTGGGTGCTCTTGTGGATGACATTCTTCACAATCTGGTGTGTTTACCACAGGTGTTTAGGGAGTTGAATAACAAGGGTGGTTCTTGCCCGGCCCCTTCATCATTTGAGCACTATGGTGAAGAGGTGACATGGAGTGACGACGGGGAAGAGGTCTATAACTTGGCCTTGGAAGTTGCATGGGGAAGCCTTGCGAGGTTGATAAAGATTATCGGTCATGGGTTGCTAGAATCCGATGTGAGGCGTTACACCGGTGACATTCTTGAAGGGGTTCGACACATTCACAAGAGTCGGTATGTTCACTGTGATTTGAAACCAGATAATATTTTGCTTGTGGAAAATGAAGATGATAGTGCCTATACCTTTGTAGCCAAAGTGGGTGACTTGGGGTTGGCCAAGAAGGAGGAGGTTCAAGAAAGGTGGAGAGGCACTCCCATGTACTTGTCTCCGGAGACTCGCCCCGGGAATCATTTCTACGATCATGAGAGTGATACTCTCTACGTTGTTGATGGAATGGAGCCTAAAAATCCTGATACGATCTCGAGTCTTGCTAGGGAGTTTCTAGGGTTTTGCCTAGCCAAGGAAACTCCGGAAAGGTGGGCAGCTGAAGAGCTTCTATCTCATCCCTTTGTGGCAAATGTTGTTAGGATAGGACGACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

227

Amino Acids

25.68

Weight (kDa)

4.81

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	58 - 171	4.3e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 171	3.2e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccIII	TCCGGA	2 cut(s)	469, 610
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	1 cut(s)	648
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	3 cut(s)	16, 261, 601
AgeI	ACCGGT	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	91, 287, 334, 434
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	626, 634
AluI	AGCT	2 cut(s)	626, 634
Alw21I	GWGCWC	2 cut(s)	34, 135
Alw26I	GTCTC	2 cut(s)	467, 471
Ama87I	CYCGRG	2 cut(s)	482, 562
Aor13HI	TCCGGA	2 cut(s)	469, 610
AoxI	GGCC	3 cut(s)	114, 186, 414
ApeKI	GCWGC	1 cut(s)	623
AsiGI	ACCGGT	1 cut(s)	272
Asp700I	GAANNNNTTC	3 cut(s)	291, 491, 633
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	3 cut(s)	113, 483, 484
AsuHPI	GGTGA	4 cut(s)	152, 160, 287, 413
AvaI	CYCGRG	2 cut(s)	482, 562
BalI	TGGCCA	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	34, 135
BbvI	GCAGC	1 cut(s)	635
BccI	CCATC	1 cut(s)	524
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BcnI	CCSGG	3 cut(s)	113, 483, 484
BcoDI	GTCTC	2 cut(s)	467, 471
BfaI	CTAG	4 cut(s)	248, 573, 584, 596
BisI	GCNGC	1 cut(s)	624
BlsI	GCNGC	1 cut(s)	625
Bme1390I	CCNGG	3 cut(s)	113, 483, 484
BmeT110I	CYCGRG	2 cut(s)	482, 562
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	117, 540
BmrFI	CCNGG	3 cut(s)	113, 483, 484
BplI	GAGNNNNNCTC	4 cut(s)	436, 468, 499, 531
BpuMI	CCSGG	3 cut(s)	113, 483, 484
BsaJI	CCNNGG	4 cut(s)	189, 481, 482, 600
BsaWI	WCCGGW	3 cut(s)	272, 469, 610
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 261, 601
Bse118I	RCCGGY	1 cut(s)	272
BseAI	TCCGGA	2 cut(s)	469, 610
BseDI	CCNNGG	4 cut(s)	189, 481, 482, 600
BseGI	GGATG	2 cut(s)	46, 643
BseLI	CCNNNNNNNGG	3 cut(s)	16, 261, 601
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	635
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	116, 188, 416
BshTI	ACCGGT	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	680
BsiHKAI	GWGCWC	2 cut(s)	34, 135
BsiHKCI	CYCGRG	2 cut(s)	482, 562
BsiSI	CCGG	5 cut(s)	113, 273, 470, 483, 611
BslI	CCNNNNNNNGG	3 cut(s)	16, 261, 601
BsmAI	GTCTC	2 cut(s)	467, 471
BsnI	GGCC	3 cut(s)	116, 188, 416
BsoBI	CYCGRG	2 cut(s)	482, 562
Bsp1286I	GDGCHC	2 cut(s)	34, 135
Bsp13I	TCCGGA	2 cut(s)	469, 610
Bsp143I	GATC	2 cut(s)	499, 558
BspANI	GGCC	3 cut(s)	116, 188, 416
BspEI	TCCGGA	2 cut(s)	469, 610
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	2 cut(s)	117, 540
BspQI	GCTCTTC	1 cut(s)	624
BsrFI	RCCGGY	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	189, 481, 482, 600
BssMI	GATC	2 cut(s)	499, 558
BssT1I	CCWWGG	2 cut(s)	189, 600
Bst4CI	ACNGT	2 cut(s)	326, 681
Bst6I	CTCTTC	3 cut(s)	138, 165, 624
BstENI	CCTNNNNNAGG	1 cut(s)	599
BstF5I	GGATG	2 cut(s)	46, 643
BstKTI	GATC	2 cut(s)	502, 561
BstMAI	GTCTC	2 cut(s)	467, 471
BstMBI	GATC	2 cut(s)	499, 558
BstMCI	CGRYCG	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	111, 481, 482
BstV1I	GCAGC	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	116, 188, 416
BtsCI	GGATG	2 cut(s)	46, 643
BtsIMutI	CAGTG	1 cut(s)	322
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	272
CspCI	CAANNNNNGTGG	2 cut(s)	422, 457
CviAII	CATG	6 cut(s)	11, 153, 201, 239, 457, 503
CviJI	RGCY	9 cut(s)	116, 188, 210, 392, 416, 541, 599, 626, 634
CviKI_1	RGCY	9 cut(s)	116, 188, 210, 392, 416, 541, 599, 626, 634
CviQI	GTAC	1 cut(s)	460
DpnI	GATC	2 cut(s)	501, 560
DpnII	GATC	2 cut(s)	499, 558
EaeI	YGGCCR	1 cut(s)	414
Eam1104I	CTCTTC	3 cut(s)	138, 165, 624
EarI	CTCTTC	3 cut(s)	138, 165, 624
Eco130I	CCWWGG	2 cut(s)	189, 600
Eco57I	CTGAAG	1 cut(s)	648
Eco88I	CYCGRG	2 cut(s)	482, 562
EcoNI	CCTNNNNNAGG	1 cut(s)	599
EcoT14I	CCWWGG	2 cut(s)	189, 600
ErhI	CCWWGG	2 cut(s)	189, 600
FaeI	CATG	6 cut(s)	14, 156, 204, 242, 460, 506
FatI	CATG	6 cut(s)	10, 152, 200, 238, 456, 502
Fnu4HI	GCNGC	1 cut(s)	624
FokI	GGATG	2 cut(s)	53, 630
Fsp4HI	GCNGC	1 cut(s)	624
FspBI	CTAG	4 cut(s)	248, 573, 584, 596
GluI	GCNGC	1 cut(s)	624
HaeIII	GGCC	3 cut(s)	116, 188, 416
HapII	CCGG	5 cut(s)	113, 273, 470, 483, 611
Hin1II	CATG	6 cut(s)	14, 156, 204, 242, 460, 506
HinfI	GANTC	5 cut(s)	251, 310, 475, 487, 565
HpaII	CCGG	5 cut(s)	113, 273, 470, 483, 611
HphI	GGTGA	4 cut(s)	152, 160, 287, 413
Hpy166II	GTNNAC	2 cut(s)	68, 322
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	7 cut(s)	284, 434, 470, 503, 551, 562, 611
Hpy8I	GTNNAC	2 cut(s)	68, 322
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	3 cut(s)	129, 281, 415
HpyCH4III	ACNGT	2 cut(s)	326, 681
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	6 cut(s)	14, 156, 204, 242, 460, 506
Kpn2I	TCCGGA	2 cut(s)	469, 610
Kzo9I	GATC	2 cut(s)	499, 558
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	9 cut(s)	44, 59, 126, 286, 351, 483, 496, 564, 624
Lsp1109I	GCAGC	1 cut(s)	635
MaeI	CTAG	4 cut(s)	248, 573, 584, 596
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	5 cut(s)	148, 158, 266, 275, 401
MalI	GATC	2 cut(s)	501, 560
MboI	GATC	2 cut(s)	499, 558
MboII	GAAGA	5 cut(s)	41, 155, 182, 377, 641
MhlI	GDGCHC	2 cut(s)	34, 135
MlsI	TGGCCA	1 cut(s)	416
MluCI	AATT	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	416
MlyI	GAGTC	3 cut(s)	319, 469, 574
MnlI	CCTC	7 cut(s)	139, 166, 210, 255, 418, 421, 440
Mox20I	TGGCCA	1 cut(s)	416
MroI	TCCGGA	2 cut(s)	469, 610
MroXI	GAANNNNTTC	3 cut(s)	291, 491, 633
MscI	TGGCCA	1 cut(s)	416
MslI	CAYNNNNRTG	3 cut(s)	138, 455, 507
Msp20I	TGGCCA	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	5 cut(s)	113, 273, 470, 483, 611
MspR9I	CCNGG	3 cut(s)	113, 483, 484
NciI	CCSGG	3 cut(s)	113, 483, 484
NdeII	GATC	2 cut(s)	499, 558
NlaIII	CATG	6 cut(s)	14, 156, 204, 242, 460, 506
NlaIV	GGNNCC	2 cut(s)	117, 540
NmuCI	GTSAC	4 cut(s)	148, 158, 275, 401
OliI	CACNNNNGTG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	562
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	624
PdmI	GAANNNNTTC	3 cut(s)	291, 491, 633
PfeI	GAWTC	2 cut(s)	251, 487
PflMI	CCANNNNNTGG	1 cut(s)	16
PinAI	ACCGGT	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	625
PleI	GAGTC	3 cut(s)	318, 469, 573
PpsI	GAGTC	3 cut(s)	318, 469, 573
PspN4I	GGNNCC	2 cut(s)	117, 540
PspPI	GGNCC	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	626
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	3 cut(s)	138, 455, 507
SapI	GCTCTTC	1 cut(s)	624
SatI	GCNGC	1 cut(s)	624
Sau3AI	GATC	2 cut(s)	499, 558
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	3 cut(s)	319, 469, 574
ScrFI	CCNGG	3 cut(s)	113, 483, 484
SduI	GDGCHC	2 cut(s)	34, 135
Sfr274I	CTCGAG	1 cut(s)	562
SgrAI	CRCCGGYG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	562
SmaI	CCCGGG	1 cut(s)	484
SmiMI	CAYNNNNRTG	3 cut(s)	138, 455, 507
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
Sse9I	AATT	1 cut(s)	23
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	4 cut(s)	248, 573, 584, 596
StyD4I	CCNGG	3 cut(s)	111, 481, 482
StyI	CCWWGG	2 cut(s)	189, 600
TaaI	ACNGT	2 cut(s)	326, 681
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	295, 563
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	2 cut(s)	251, 487
TscAI	CASTG	1 cut(s)	329
TseFI	GTSAC	4 cut(s)	148, 158, 275, 401
TseI	GCWGC	1 cut(s)	623
Tsp45I	GTSAC	4 cut(s)	148, 158, 275, 401
TspDTI	ATGAA	2 cut(s)	111, 378
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	1 cut(s)	329
Van91I	CCANNNNNTGG	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	562
XmaI	CCCGGG	1 cut(s)	482
XmnI	GAANNNNTTC	3 cut(s)	291, 491, 633
XspI	CTAG	4 cut(s)	248, 573, 584, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.