Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

10711539 .. 10712534

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAAAGAAAGGCAGAAATAAAAGTAGAAGTAAAAATAAAGAAGCAGAGGAATTGCAGGCGTAATCATGGAGTGAACTGGGTAAGAGGAGAGCTGATCGGAAGAGGAAGATATGGGTCTGTTCATCTTGCCACTTCCGCGAAACCCATAACACGGTTTGGTCGTAGGCCTGAAATTATGGTGGTGAAATCGTCTAACGGGGTGCCGTGTTTAAGGTCTGTTCAGCATGAGGCAGAGGTTCTCATCAAACTTAAGGGCTGCCCTTCTATTATTGAGTGCTTTGGTGGACAATTCACCGCCGATGAGAATGGTGAGAAGGTTTACAATTTGTTCTTGGAATATGCCTCTGGCGGAAGCCTTGATCATCTGATCAAGAAATCCGACGGTTGTGGATTGCCGGAATCTAAGGTTAAGTGGTATACTAGGTCAATTCTTGAAGGGGTTAAGCACATTCACCAGTGTGATTATGTTCACTGCGATTTGACCTCGGAGAACATTCTGCTTGTGCCTACCACCACAAGTTGTGGAAGTACTAGTTTGGTGGCAAAGGTAGCCGATTTCAAATTGGCTAAGAGAACAAAAGAAAAGGTGGGTGGATCTGGATGTAGAGGCTCTCCTATATATCTGTCCCCAGAAGCTTTACTTGACAAGTTGCAGGATCAGCCCTATGAAATTTGGTCTGTTGGTTGCATTGTGCTTGAGATGCTCACCGGGAAGCCCTCATGGGATAAGAGTTATTATTGGAAGCCTCAGGATTTCCTAGACATGCTGGTTTTTAACTCTCCCAAGATTCCAGCTAAAATCTCAAAGGAGGGGAGGGATTTTCTAAAGATCTGCCTAGCCTTCAATCCCTATAAAAGGTTAACTACTGAAGAGCTCTTATCTCATCCGTTTGTTGCTCAGTCAATACCACCAGAAGAATATAATGGATCTTCACAATCTGATATTGCAAGTGTAACTTTGAGTTCAAGCAGTGAAGAAGTGACAGTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

36.92

Weight (kDa)

8.91

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	419
AccII	CGCG	1 cut(s)	140
AciI	CCGC	3 cut(s)	138, 297, 351
AclWI	GGATC	3 cut(s)	604, 666, 937
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	1 cut(s)	891
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	153, 858
AflII	CTTAAG	1 cut(s)	251
AgsI	TTSAA	4 cut(s)	437, 562, 847, 969
AhlI	ACTAGT	1 cut(s)	533
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	4 cut(s)	94, 638, 797, 877
AluI	AGCT	4 cut(s)	94, 638, 797, 877
Alw21I	GWGCWC	1 cut(s)	879
AlwI	GGATC	3 cut(s)	604, 666, 937
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	258
ApoI	RAATTY	1 cut(s)	672
AsuC2I	CCSGG	1 cut(s)	712
AsuHPI	GGTGA	5 cut(s)	196, 286, 323, 446, 700
AxyI	CCTNAGG	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	202
BanII	GRGCYC	1 cut(s)	879
Bbv12I	GWGCWC	1 cut(s)	879
BbvI	GCAGC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	190
BclI	TGATCA	2 cut(s)	361, 369
BcnI	CCSGG	1 cut(s)	712
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	4 cut(s)	423, 534, 761, 839
BfrI	CTTAAG	1 cut(s)	251
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	1 cut(s)	259
BlsI	GCNGC	1 cut(s)	260
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	712
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	719
BpuMI	CCSGG	1 cut(s)	712
BsaJI	CCNNGG	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 858
Bse1I	ACTGG	2 cut(s)	83, 457
Bse21I	CCTNAGG	1 cut(s)	750
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	2 cut(s)	608, 886
BseLI	CCNNNNNNNGG	2 cut(s)	153, 858
BseMII	CTCAG	2 cut(s)	764, 914
BseNI	ACTGG	2 cut(s)	83, 457
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	245
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	169
BshNI	GGYRCC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	879
BsiSI	CCGG	2 cut(s)	398, 711
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	153, 858
BsmFI	GGGAC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	879
Bsp143I	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
BspACI	CCGC	3 cut(s)	138, 297, 351
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	763, 913
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	3 cut(s)	604, 666, 937
BspQI	GCTCTTC	1 cut(s)	867
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	83, 457
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
BssNAI	GTATAC	1 cut(s)	420
Bst1107I	GTATAC	1 cut(s)	420
Bst4CI	ACNGT	3 cut(s)	156, 386, 988
Bst6I	CTCTTC	2 cut(s)	97, 867
BstAFI	CTTAAG	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	405, 570, 750, 900
BstENI	CCTNNNNNAGG	1 cut(s)	856
BstF5I	GGATG	2 cut(s)	608, 886
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	7 cut(s)	99, 364, 372, 599, 661, 834, 932
BstMBI	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 551, 661, 703
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	1 cut(s)	710
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	596, 831, 929
BstYI	RGATCY	3 cut(s)	596, 831, 929
BstZ17I	GTATAC	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	750
BsuRI	GGCC	1 cut(s)	169
BtsCI	GGATG	2 cut(s)	608, 886
BtsI	GCAGTG	2 cut(s)	472, 979
BtsIMutI	CAGTG	4 cut(s)	464, 472, 979, 993
Cac8I	GCNNGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	4 cut(s)	68, 227, 723, 766
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	4 cut(s)	405, 570, 750, 900
DpnI	GATC	7 cut(s)	98, 363, 371, 598, 660, 833, 931
DpnII	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
Eam1104I	CTCTTC	2 cut(s)	97, 867
EarI	CTCTTC	2 cut(s)	97, 867
EciI	GGCGGA	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	877
Eco147I	AGGCCT	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	879
Eco53kI	GAGCTC	1 cut(s)	877
Eco57I	CTGAAG	1 cut(s)	891
Eco81I	CCTNAGG	1 cut(s)	750
EcoICRI	GAGCTC	1 cut(s)	877
EcoNI	CCTNNNNNAGG	1 cut(s)	856
EcoT38I	GRGCYC	1 cut(s)	879
FaeI	CATG	4 cut(s)	71, 230, 726, 769
FalI	AAGNNNNNCTT	4 cut(s)	627, 659, 943, 975
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	4 cut(s)	67, 226, 722, 765
FbaI	TGATCA	2 cut(s)	361, 369
FblI	GTMKAC	1 cut(s)	419
Fnu4HI	GCNGC	1 cut(s)	259
FokI	GGATG	2 cut(s)	615, 873
FriOI	GRGCYC	1 cut(s)	879
Fsp4HI	GCNGC	1 cut(s)	259
FspBI	CTAG	4 cut(s)	423, 534, 761, 839
GluI	GCNGC	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	2 cut(s)	398, 711
Hin1II	CATG	4 cut(s)	71, 230, 726, 769
HincII	GTYRAC	1 cut(s)	864
HindII	GTYRAC	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	2 cut(s)	401, 790
HpaI	GTTAAC	1 cut(s)	864
HpaII	CCGG	2 cut(s)	398, 711
HphI	GGTGA	5 cut(s)	196, 286, 323, 446, 700
Hpy166II	GTNNAC	6 cut(s)	76, 287, 322, 420, 472, 864
Hpy188I	TCNGA	5 cut(s)	101, 369, 382, 490, 943
Hpy188III	TCNNGA	4 cut(s)	373, 434, 600, 752
Hpy8I	GTNNAC	6 cut(s)	76, 287, 322, 420, 472, 864
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	4 cut(s)	273, 310, 431, 853
HpyCH4III	ACNGT	3 cut(s)	156, 386, 988
HpyCH4V	TGCA	4 cut(s)	57, 655, 690, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 551, 661, 703
HpyF3I	CTNAG	4 cut(s)	405, 570, 750, 900
Hsp92II	CATG	4 cut(s)	71, 230, 726, 769
Ksp22I	TGATCA	2 cut(s)	361, 369
KspAI	GTTAAC	1 cut(s)	864
Kzo9I	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
LguI	GCTCTTC	1 cut(s)	867
Lsp1109I	GCAGC	1 cut(s)	245
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	4 cut(s)	423, 534, 761, 839
MaeIII	GTNAC	2 cut(s)	955, 982
MalI	GATC	7 cut(s)	98, 363, 371, 598, 660, 833, 931
MboI	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
MboII	GAAGA	6 cut(s)	114, 120, 884, 924, 929, 989
MflI	RGATCY	3 cut(s)	596, 831, 929
MhlI	GDGCHC	1 cut(s)	879
MluCI	AATT	7 cut(s)	52, 174, 290, 325, 429, 563, 672
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	6 cut(s)	212, 252, 411, 444, 777, 863
MslI	CAYNNNNRTG	1 cut(s)	459
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	2 cut(s)	398, 711
MspR9I	CCNGG	1 cut(s)	712
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	137, 551, 661, 703
NciI	CCSGG	1 cut(s)	712
NdeII	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
NlaIII	CATG	4 cut(s)	71, 230, 726, 769
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	1 cut(s)	982
NspI	RCATGY	1 cut(s)	769
OliI	CACNNNNGTG	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PfeI	GAWTC	2 cut(s)	401, 790
PkrI	GCNGC	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	879
PspN4I	GGNNCC	1 cut(s)	204
PsuI	RGATCY	3 cut(s)	596, 831, 929
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	879
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	6 cut(s)	212, 252, 411, 444, 777, 863
SatI	GCNGC	1 cut(s)	259
Sau3AI	GATC	7 cut(s)	96, 361, 369, 596, 658, 831, 929
ScaI	AGTACT	1 cut(s)	532
ScrFI	CCNGG	1 cut(s)	712
SduI	GDGCHC	1 cut(s)	879
SfaNI	GCATC	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	251, 698
SmoI	CTYRAG	2 cut(s)	251, 698
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	7 cut(s)	52, 174, 290, 325, 429, 563, 672
SseBI	AGGCCT	1 cut(s)	169
SsiI	CCGC	3 cut(s)	138, 297, 351
SspMI	CTAG	4 cut(s)	423, 534, 761, 839
SstI	GAGCTC	1 cut(s)	879
StuI	AGGCCT	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	710
TaaI	ACNGT	3 cut(s)	156, 386, 988
TasI	AATT	7 cut(s)	52, 174, 290, 325, 429, 563, 672
TatI	WGTACW	1 cut(s)	530
TfiI	GAWTC	2 cut(s)	401, 790
Tru1I	TTAA	6 cut(s)	212, 252, 411, 444, 777, 863
Tru9I	TTAA	6 cut(s)	212, 252, 411, 444, 777, 863
TscAI	CASTG	4 cut(s)	464, 479, 979, 993
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	1 cut(s)	258
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	3 cut(s)	17, 113, 684
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	4 cut(s)	464, 479, 979, 993
Vha464I	CTTAAG	1 cut(s)	251
XagI	CCTNNNNNAGG	1 cut(s)	856
XapI	RAATTY	1 cut(s)	672
XceI	RCATGY	1 cut(s)	769
XmiI	GTMKAC	1 cut(s)	419
XspI	CTAG	4 cut(s)	423, 534, 761, 839
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.