Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

15594630 .. 15595628

Gene Structure 999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCACTGGTTGAGAGGAGAGTTGATCGGAGAAGGACGCTGTGCTTCTGTTTTTCTTGCTACTCGGAAGAAAAAAACAAGGGGTCAGCGTAGTAGTATGCTGACCAATTTGCCGGCAGTAATGGTGGTGAAATCGGCAGAGATGTCAGATTCTGCGTTTATCGAGCACGAGGCGGAGGTTCTCAGTGAGATTAAGGGCTGCCCTTTTGTTGTCGATTGCTTTGGCGAAGAGACCACGAGCACTGACGAGGGTGATGAGGTCTACAACTTGTTGTTAGAATATGCCTCGGGAGGAACCCTTGACGATCTCATAGAGCAATCCAACGGTCGCGGATTGCCTAAATCCCAAGTTAGAAGGTACACAAGGTGCATTCTTGAAGGGCTTAAGCACATTCATAAGTGCGATTATGTTCACTGCAATTTAAAGCCCGAGAACATTCTGCTCGTGCGCAATCGTGCTAGTACTAGTAGCGGTAATCCTACTAGTTTTGTGGCCAAGATTGCTGATTTTGGTTTTGCTAAGAGGAGCAAGGACAACTACGGTGAATGGAGAGGCACTCGTCTGTATCAGTCGCCAGAAGCATTGGAGGATAACAAGCAGGACAAGCCCTCGGATATTTGGTCTCTTGGTTGTATCGTGCTTGAGATGCTGACAGGAAAATCCCTCTCGGATTTGGACTCTGGTTGTGATTACAGCGATTTCGATGATAGGATGACATGGTTTGATCATGTATCTACTCCCAAAATCCCCGCTGAAATCACAGGTACAGCCAGGGATTTTCTTAAGAGTTGCCTTGCCGTGCGGCCTTCAAGAAGGTTAACTGCTGAAGAGCTATTATTTCATTCGTTTGTTGCACAACCACAACCGTCAAAACCAGCTCGTTGCACGAAGGGGAAGATGGCAAGATCTTATTTGTGCCATGCAGGTTATAACAAAAGCTCTGTCGTTGTTCCCAGAATTCCACCCCCGCCGGGTTTTGAGACAGCAGCTGGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

333

Amino Acids

36.87

Weight (kDa)

7.06

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	6 - 284	2.5e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	7 - 278	5.5e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
Acc16I	TGCGCA	1 cut(s)	449
Acc36I	ACCTGC	1 cut(s)	914
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	330
AciI	CCGC	6 cut(s)	173, 330, 471, 750, 802, 968
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	1 cut(s)	957
AcuI	CTGAAG	1 cut(s)	846
AdeI	CACNNNGTG	1 cut(s)	366
AfaI	GTAC	3 cut(s)	359, 463, 766
AfiI	CCNNNNNNNGG	1 cut(s)	971
AflII	CTTAAG	2 cut(s)	383, 782
AgsI	TTSAA	2 cut(s)	377, 810
AhlI	ACTAGT	2 cut(s)	464, 482
AjnI	CCWGG	1 cut(s)	770
AluBI	AGCT	4 cut(s)	832, 878, 939, 989
AluI	AGCT	4 cut(s)	832, 878, 939, 989
Alw21I	GWGCWC	2 cut(s)	168, 242
Alw26I	GTCTC	3 cut(s)	224, 627, 974
AlwNI	CAGNNNCTG	2 cut(s)	152, 989
Ama87I	CYCGRG	2 cut(s)	286, 428
AoxI	GGCC	2 cut(s)	492, 803
ApeKI	GCWGC	2 cut(s)	198, 986
ApoI	RAATTY	1 cut(s)	957
ArsI	GACNNNNNNTTYG	2 cut(s)	927, 959
AspLEI	GCGC	1 cut(s)	450
AsuC2I	CCSGG	1 cut(s)	972
AsuHPI	GGTGA	3 cut(s)	139, 263, 554
AvaI	CYCGRG	2 cut(s)	286, 428
BalI	TGGCCA	1 cut(s)	494
BauI	CACGAG	3 cut(s)	167, 235, 443
Bbv12I	GWGCWC	2 cut(s)	168, 242
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	892
BceAI	ACGGC	1 cut(s)	782
BciT130I	CCWGG	1 cut(s)	772
BclI	TGATCA	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	972
BcoDI	GTCTC	3 cut(s)	224, 627, 974
BcuI	ACTAGT	2 cut(s)	464, 482
BfaI	CTAG	3 cut(s)	459, 465, 483
BfrI	CTTAAG	2 cut(s)	383, 782
BfuAI	ACCTGC	1 cut(s)	914
BglII	AGATCT	1 cut(s)	905
BisI	GCNGC	3 cut(s)	199, 803, 987
BlsI	GCNGC	3 cut(s)	200, 804, 988
BmcAI	AGTACT	1 cut(s)	463
Bme1390I	CCNGG	2 cut(s)	772, 972
BmeT110I	CYCGRG	2 cut(s)	286, 428
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	772, 972
BmsI	GCATC	1 cut(s)	636
BplI	GAGNNNNNCTC	2 cut(s)	541, 573
BpuEI	CTTGAG	1 cut(s)	662
BpuMI	CCSGG	1 cut(s)	972
BsaI	GGTCTC	2 cut(s)	224, 627
BsaJI	CCNNGG	3 cut(s)	285, 609, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	971
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	285, 609, 771
BseGI	GGATG	1 cut(s)	717
BseLI	CCNNNNNNNGG	1 cut(s)	971
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	30, 538
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	328
BshFI	GGCC	2 cut(s)	494, 805
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	2 cut(s)	168, 242
BsiHKCI	CYCGRG	2 cut(s)	286, 428
BsiSI	CCGG	2 cut(s)	113, 971
BslI	CCNNNNNNNGG	1 cut(s)	971
BsmAI	GTCTC	3 cut(s)	224, 627, 974
BsmI	GAATGC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	494, 805
Bso31I	GGTCTC	2 cut(s)	224, 627
BsoBI	CYCGRG	2 cut(s)	286, 428
Bsp1286I	GDGCHC	2 cut(s)	168, 242
Bsp143I	GATC	5 cut(s)	24, 304, 724, 905, 992
BspACI	CCGC	6 cut(s)	173, 330, 471, 750, 802, 968
BspANI	GGCC	2 cut(s)	494, 805
BspCNI	CTCAG	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	914
BspQI	GCTCTTC	1 cut(s)	822
BspTI	CTTAAG	2 cut(s)	383, 782
BspTNI	GGTCTC	2 cut(s)	224, 627
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	285, 609, 771
BssMI	GATC	5 cut(s)	24, 304, 724, 905, 992
BssSI	CACGAG	3 cut(s)	167, 235, 443
Bst2BI	CACGAG	3 cut(s)	167, 235, 443
Bst2UI	CCWGG	1 cut(s)	772
Bst4CI	ACNGT	3 cut(s)	326, 542, 867
Bst6I	CTCTTC	2 cut(s)	222, 822
BstAFI	CTTAAG	2 cut(s)	383, 782
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	182, 519
BstF5I	GGATG	1 cut(s)	717
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	5 cut(s)	27, 307, 727, 908, 995
BstMAI	GTCTC	3 cut(s)	224, 627, 974
BstMBI	GATC	5 cut(s)	24, 304, 724, 905, 992
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	500, 604, 646
BstNI	CCWGG	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	770, 970
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	905
BstYI	RGATCY	1 cut(s)	905
BsuRI	GGCC	2 cut(s)	494, 805
BtsCI	GGATG	1 cut(s)	717
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	4 cut(s)	4, 190, 240, 412
BveI	ACCTGC	1 cut(s)	914
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	2 cut(s)	152, 989
CfoI	GCGC	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	112
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	358, 462, 765
CviAII	CATG	3 cut(s)	717, 728, 920
CviQI	GTAC	3 cut(s)	358, 462, 765
DdeI	CTNAG	2 cut(s)	182, 519
DpnI	GATC	5 cut(s)	26, 306, 726, 907, 994
DpnII	GATC	5 cut(s)	24, 304, 724, 905, 992
DraI	TTTAAA	1 cut(s)	423
DraIII	CACNNNGTG	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	222, 822
EarI	CTCTTC	2 cut(s)	222, 822
EciI	GGCGGA	1 cut(s)	188
Eco31I	GGTCTC	2 cut(s)	224, 627
Eco57I	CTGAAG	1 cut(s)	846
Eco88I	CYCGRG	2 cut(s)	286, 428
EcoRI	GAATTC	1 cut(s)	957
EcoRII	CCWGG	1 cut(s)	770
FaeI	CATG	3 cut(s)	720, 731, 923
FatI	CATG	3 cut(s)	716, 727, 919
FauI	CCCGC	2 cut(s)	757, 975
FbaI	TGATCA	1 cut(s)	724
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	199, 803, 987
FokI	GGATG	1 cut(s)	724
Fsp4HI	GCNGC	3 cut(s)	199, 803, 987
FspBI	CTAG	3 cut(s)	459, 465, 483
FspI	TGCGCA	1 cut(s)	449
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	3 cut(s)	199, 803, 987
HaeIII	GGCC	2 cut(s)	494, 805
HapII	CCGG	2 cut(s)	113, 971
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	3 cut(s)	720, 731, 923
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	819
HindII	GTYRAC	1 cut(s)	819
HinfI	GANTC	2 cut(s)	149, 677
HpaI	GTTAAC	1 cut(s)	819
HpaII	CCGG	2 cut(s)	113, 971
HphI	GGTGA	3 cut(s)	139, 263, 554
Hpy166II	GTNNAC	4 cut(s)	262, 360, 412, 819
Hpy188I	TCNGA	5 cut(s)	29, 66, 148, 613, 670
Hpy188III	TCNNGA	3 cut(s)	288, 374, 810
Hpy8I	GTNNAC	4 cut(s)	262, 360, 412, 819
HpyAV	CCTTC	6 cut(s)	26, 348, 371, 807, 816, 883
HpyCH4III	ACNGT	3 cut(s)	326, 542, 867
HpyCH4V	TGCA	6 cut(s)	4, 369, 417, 854, 885, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	500, 604, 646
HpyF3I	CTNAG	2 cut(s)	182, 519
Hsp92II	CATG	3 cut(s)	720, 731, 923
HspAI	GCGC	1 cut(s)	448
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Ksp22I	TGATCA	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	819
Kzo9I	GATC	5 cut(s)	24, 304, 724, 905, 992
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	1 cut(s)	525
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	1 cut(s)	636
MaeI	CTAG	3 cut(s)	459, 465, 483
MalI	GATC	5 cut(s)	26, 306, 726, 907, 994
MboI	GATC	5 cut(s)	24, 304, 724, 905, 992
MboII	GAAGA	4 cut(s)	79, 239, 839, 907
MflI	RGATCY	1 cut(s)	905
MhlI	GDGCHC	2 cut(s)	168, 242
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	3 cut(s)	106, 418, 957
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	345
Mox20I	TGGCCA	1 cut(s)	494
MroNI	GCCGGC	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	5 cut(s)	192, 384, 422, 783, 818
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	752, 989
MspCI	CTTAAG	2 cut(s)	383, 782
MspI	CCGG	2 cut(s)	113, 971
MspR9I	CCNGG	2 cut(s)	772, 972
Mva1269I	GAATGC	1 cut(s)	369
MvaI	CCWGG	1 cut(s)	772
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	500, 604, 646
NaeI	GCCGGC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	972
NdeII	GATC	5 cut(s)	24, 304, 724, 905, 992
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	720, 731, 923
NlaIV	GGNNCC	1 cut(s)	295
NsbI	TGCGCA	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	369
PdiI	GCCGGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	200, 804, 988
PleI	GAGTC	1 cut(s)	671
PpsI	GAGTC	1 cut(s)	671
PsiI	TTATAA	1 cut(s)	930
Psp6I	CCWGG	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	770
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	2 cut(s)	152, 989
PsuI	RGATCY	1 cut(s)	905
PvuII	CAGCTG	1 cut(s)	989
RsaI	GTAC	3 cut(s)	359, 463, 766
RsaNI	GTAC	3 cut(s)	358, 462, 765
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	5 cut(s)	192, 384, 422, 783, 818
SatI	GCNGC	3 cut(s)	199, 803, 987
Sau3AI	GATC	5 cut(s)	24, 304, 724, 905, 992
ScaI	AGTACT	1 cut(s)	463
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	2 cut(s)	772, 972
SduI	GDGCHC	2 cut(s)	168, 242
SfaNI	GCATC	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	383, 641, 782
SmoI	CTYRAG	3 cut(s)	383, 641, 782
SpeI	ACTAGT	2 cut(s)	464, 482
Sse9I	AATT	3 cut(s)	106, 418, 957
SsiI	CCGC	6 cut(s)	173, 330, 471, 750, 802, 968
SspMI	CTAG	3 cut(s)	459, 465, 483
StyD4I	CCNGG	2 cut(s)	770, 970
TaaI	ACNGT	3 cut(s)	326, 542, 867
TaqI	TCGA	3 cut(s)	162, 213, 702
TasI	AATT	3 cut(s)	106, 418, 957
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	5 cut(s)	192, 384, 422, 783, 818
Tru9I	TTAA	5 cut(s)	192, 384, 422, 783, 818
TscAI	CASTG	3 cut(s)	190, 247, 419
TseI	GCWGC	2 cut(s)	198, 986
TspDTI	ATGAA	2 cut(s)	383, 830
TspRI	CASTG	3 cut(s)	190, 247, 419
Vha464I	CTTAAG	2 cut(s)	383, 782
XapI	RAATTY	1 cut(s)	957
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	3 cut(s)	459, 465, 483
ZrmI	AGTACT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.