Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011910.1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

58014 .. 58355

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011910.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgaggaagtttagaacaggtggagaggcatgcccatgtacttatctccagagattgtcttcaacaatgagcaagaacagcctagtgacatttgggctgtggggtgcattgttcttgaaatgcttactgaaaagcgtccccataatcatttctacaatcattagagtgattgattctctctgcattgtttatggaatgggccctaaaattcctgatatgatatcgagtcttactagggagtttctagggttgtgcctaggctgcctagctaaggtaactcatgaaaggtggacagctgaagagcttctatctcatccatttgtggcaaatgttgttagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

9.24

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	318
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	63, 118
AluBI	AGCT	3 cut(s)	269, 296, 304
AluI	AGCT	3 cut(s)	269, 296, 304
AoxI	GGCC	1 cut(s)	199
ApaI	GGGCCC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	207
Asp700I	GAANNNNTTC	1 cut(s)	303
AspA2I	CCTAGG	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	199, 200
AvrII	CCTAGG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	248
BfaI	CTAG	5 cut(s)	83, 234, 245, 257, 266
BisI	GCNGC	1 cut(s)	262
BlnI	CCTAGG	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	199, 200
BmiI	GGNNCC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	201
Bsp120I	GGGCCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	201
BspQI	GCTCTTC	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	256
BssT1I	CCWWGG	1 cut(s)	256
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	270
BstENI	CCTNNNNNAGG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 261
BstNSI	RCATGY	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	31
CciI	TCATGA	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	199, 200
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	39
CviAII	CATG	3 cut(s)	30, 36, 281
CviJI	RGCY	7 cut(s)	81, 97, 201, 261, 269, 296, 304
CviKI_1	RGCY	7 cut(s)	81, 97, 201, 261, 269, 296, 304
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	318
EcoNI	CCTNNNNNAGG	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRV	GATATC	1 cut(s)	222
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	3 cut(s)	33, 39, 284
FaiI	YATR	6 cut(s)	31, 37, 143, 192, 218, 282
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	3 cut(s)	29, 35, 280
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	1 cut(s)	300
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	262
FspBI	CTAG	5 cut(s)	83, 234, 245, 257, 266
GluI	GCNGC	1 cut(s)	262
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	124
Hin1II	CATG	3 cut(s)	33, 39, 284
HinfI	GANTC	2 cut(s)	173, 226
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188III	TCNNGA	4 cut(s)	49, 115, 212, 281
Hpy8I	GTNNAC	1 cut(s)	291
HpyCH4V	TGCA	2 cut(s)	107, 183
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 261
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	3 cut(s)	33, 39, 284
LguI	GCTCTTC	1 cut(s)	294
LpnPI	CCDG	3 cut(s)	3, 62, 225
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	5 cut(s)	83, 234, 245, 257, 266
MaeIII	GTNAC	2 cut(s)	85, 274
MboII	GAAGA	2 cut(s)	51, 311
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	235
MnlI	CCTC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	303
MslI	CAYNNNNRTG	2 cut(s)	34, 164
MspA1I	CMGCKG	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	78, 261
NlaIII	CATG	3 cut(s)	33, 39, 284
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PagI	TCATGA	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	201
PspOMI	GGGCCC	1 cut(s)	199
PspPI	GGNCC	2 cut(s)	199, 200
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
RseI	CAYNNNNRTG	2 cut(s)	34, 164
SapI	GCTCTTC	1 cut(s)	294
SatI	GCNGC	1 cut(s)	262
Sau96I	GGNCC	2 cut(s)	199, 200
SchI	GAGTC	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	6 cut(s)	22, 271, 276, 290, 298, 306
SmiMI	CAYNNNNRTG	2 cut(s)	34, 164
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	1 cut(s)	207
SspMI	CTAG	5 cut(s)	83, 234, 245, 257, 266
StyI	CCWWGG	1 cut(s)	256
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	297
XagI	CCTNNNNNAGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	207
XceI	RCATGY	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	5 cut(s)	83, 234, 245, 257, 266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.