Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

26761438 .. 26762415

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1219600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAAACGAAAGGCTCAAGAACAATTAGAAAAGGGACAAAAGAATCATGGAGTGCACTGGTTGAGAGGGGAGATGATTGGAGAAGGAAGCTTTGGGTCTGTGTTTCTTGCCACTCCCAAGAAACCAAGAACGAGCAAGTTTCGCAGTATGTTTGATTTGCCTGCTGTGATGGCGGTTAAATCGGCGGAGGTTTCTACTTCAGATCCTATTCAGCATGAAGCGGAGGTTCTCTTTGAGATCAAGGGTTGCCCCTTTGTTATCGAGCGCTTTGGTGAAGAGATCACAACCACTGACAAGGGTGACATGGTCTACAACTTGTTGCTGGAATTTGCCACAGGAGGAAGCCTTGACGGTTTGATCAAGAAATCCAACGGTAAGGGATTGCCTGAATCCGATGTTAAGCACTACACGAGGACAATTCTTGAAGGGCTTAAGCACATACACAAGTGTGGTTATGTTCACTGCGATTTGACGCCGGAAAACATTCTTCTTATGCCTAGTACGACCGCGTCTAATGTTAGTACTGCTAACTTGGTAGCCAAGGTTGCAGATTTAGGATTGGCTAAGAGAAGGAGTCGATGGGAAGGCAATCCCATGTATGCAGACGCATGTGCTTGGACTGATAATGCACAGGATGAGACGTCAATTGATGTATGGTCCCTGGGTTGTATTGTACTTCAAATGCTAACCGGCAAGCTCCCATGTGAACTTGTCGAGTTCTTGGACATGGCTTCTTTTGAATTAACTCCCAATAGCCCTGCTGAGATCTCAAGCGAGGCTAGAGATTTCCTGAAGAGTTGCTTTGCCCGGAGACCTCGGGAAAGGTTGACAGCTGAAAAGCTCTTGCTCCATCGTTTTGTAGCACAGCCACAAGCATCAGAAGCCAATGGTCATCATATCCAGGTGGTTAAACAGCGGAAAGGAATGTTGAAGAAGGCATCATCAGCTCAACTTTCGGCAATCCAGATGGTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

326

Amino Acids

36.01

Weight (kDa)

8.1

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	23 - 287	9e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	24 - 281	5.4e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	644
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	509
AciI	CCGC	5 cut(s)	173, 185, 221, 507, 916
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	2 cut(s)	183, 812
AcyI	GRCGYC	2 cut(s)	473, 641
AfaI	GTAC	3 cut(s)	502, 523, 675
AfeI	AGCGCT	1 cut(s)	266
AflII	CTTAAG	1 cut(s)	431
AgsI	TTSAA	4 cut(s)	425, 680, 740, 931
AjnI	CCWGG	2 cut(s)	660, 900
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	5 cut(s)	90, 697, 833, 841, 947
AluI	AGCT	5 cut(s)	90, 697, 833, 841, 947
Alw21I	GWGCWC	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	632, 805
Alw44I	GTGCAC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	816
Aor51HI	AGCGCT	1 cut(s)	266
ApaLI	GTGCAC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	326
Asp700I	GAANNNNTTC	1 cut(s)	483
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	657
AsuC2I	CCSGG	1 cut(s)	808
AsuHPI	GGTGA	2 cut(s)	284, 311
AvaI	CYCGRG	1 cut(s)	816
AvaII	GGWCC	1 cut(s)	657
BaeGI	GKGCMC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	57
BccI	CCATC	4 cut(s)	163, 573, 858, 961
BciT130I	CCWGG	2 cut(s)	662, 902
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	632, 805
BfaI	CTAG	2 cut(s)	498, 780
BfoI	RGCGCY	1 cut(s)	268
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	765
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	3 cut(s)	662, 808, 902
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	1 cut(s)	816
BmgT120I	GGNCC	1 cut(s)	657
BmiI	GGNNCC	1 cut(s)	659
BmrFI	CCNGG	3 cut(s)	662, 808, 902
BmsI	GCATC	2 cut(s)	884, 947
BpuEI	CTTGAG	1 cut(s)	754
BpuMI	CCSGG	1 cut(s)	808
BsaHI	GRCGYC	2 cut(s)	473, 641
BsaI	GGTCTC	1 cut(s)	805
BsaJI	CCNNGG	4 cut(s)	540, 660, 661, 815
Bse118I	RCCGGY	1 cut(s)	689
Bse1I	ACTGG	1 cut(s)	62
BseBI	CCWGG	2 cut(s)	662, 902
BseDI	CCNNGG	4 cut(s)	540, 660, 661, 815
BseGI	GGATG	1 cut(s)	640
BseMII	CTCAG	1 cut(s)	753
BseNI	ACTGG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	507
BsiEI	CGRYCG	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	3 cut(s)	476, 690, 808
BslFI	GGGAC	2 cut(s)	48, 643
BsmAI	GTCTC	2 cut(s)	632, 805
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	48, 643
Bso31I	GGTCTC	1 cut(s)	805
BsoBI	CYCGRG	1 cut(s)	816
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	5 cut(s)	202, 237, 279, 357, 765
BspACI	CCGC	5 cut(s)	173, 185, 221, 507, 916
BspCNI	CTCAG	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	509
BspLI	GGNNCC	1 cut(s)	659
BspPI	GGATC	1 cut(s)	197
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	805
BsrFI	RCCGGY	1 cut(s)	689
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	689
BssECI	CCNNGG	4 cut(s)	540, 660, 661, 815
BssMI	GATC	5 cut(s)	202, 237, 279, 357, 765
BssNI	GRCGYC	2 cut(s)	473, 641
BssSI	CACGAG	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	409
Bst2UI	CCWGG	2 cut(s)	662, 902
Bst4CI	ACNGT	2 cut(s)	353, 374
Bst6I	CTCTTC	2 cut(s)	270, 788
BstACI	GRCGYC	2 cut(s)	473, 641
BstAFI	CTTAAG	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	162, 695
BstDEI	CTNAG	3 cut(s)	564, 762, 975
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	5 cut(s)	205, 240, 282, 360, 768
BstMAI	GTCTC	2 cut(s)	632, 805
BstMBI	GATC	5 cut(s)	202, 237, 279, 357, 765
BstMCI	CGRYCG	1 cut(s)	507
BstMWI	GCNNNNNNNGC	5 cut(s)	141, 170, 545, 881, 944
BstNI	CCWGG	2 cut(s)	662, 902
BstNSI	RCATGY	1 cut(s)	612
BstSCI	CCNGG	3 cut(s)	660, 806, 900
BstSLI	GKGCMC	1 cut(s)	57
BstUI	CGCG	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	202, 765
BstYI	RGATCY	2 cut(s)	202, 765
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	3 cut(s)	55, 288, 460
Cac8I	GCNNGC	2 cut(s)	162, 695
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	657
CseI	GACGC	3 cut(s)	481, 498, 614
Csp6I	GTAC	3 cut(s)	501, 522, 674
CviAII	CATG	7 cut(s)	47, 215, 304, 595, 609, 702, 727
CviQI	GTAC	3 cut(s)	501, 522, 674
DdeI	CTNAG	3 cut(s)	564, 762, 975
DpnI	GATC	5 cut(s)	204, 239, 281, 359, 767
DpnII	GATC	5 cut(s)	202, 237, 279, 357, 765
Eam1104I	CTCTTC	2 cut(s)	270, 788
EarI	CTCTTC	2 cut(s)	270, 788
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	540
Eco31I	GGTCTC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	657
Eco47III	AGCGCT	1 cut(s)	266
Eco57I	CTGAAG	2 cut(s)	183, 812
Eco88I	CYCGRG	1 cut(s)	816
EcoRII	CCWGG	2 cut(s)	660, 900
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	7 cut(s)	50, 218, 307, 598, 612, 705, 730
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	2 cut(s)	48, 643
FatI	CATG	7 cut(s)	46, 214, 303, 594, 608, 701, 726
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	309
FokI	GGATG	1 cut(s)	647
FspBI	CTAG	2 cut(s)	498, 780
GlaI	GCGC	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	268
HapII	CCGG	3 cut(s)	476, 690, 808
HgaI	GACGC	3 cut(s)	481, 498, 614
HhaI	GCGC	1 cut(s)	267
Hin1I	GRCGYC	2 cut(s)	473, 641
Hin1II	CATG	7 cut(s)	50, 218, 307, 598, 612, 705, 730
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	1 cut(s)	828
HindII	GTYRAC	1 cut(s)	828
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	3 cut(s)	43, 389, 574
HpaII	CCGG	3 cut(s)	476, 690, 808
HphI	GGTGA	2 cut(s)	284, 311
Hpy166II	GTNNAC	5 cut(s)	55, 310, 460, 707, 828
Hpy188I	TCNGA	3 cut(s)	202, 394, 880
Hpy188III	TCNNGA	6 cut(s)	17, 361, 422, 790, 818, 964
Hpy8I	GTNNAC	5 cut(s)	55, 310, 460, 707, 828
HpyAV	CCTTC	5 cut(s)	77, 419, 564, 578, 928
HpyCH4III	ACNGT	2 cut(s)	353, 374
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	4 cut(s)	55, 548, 602, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	141, 170, 545, 881, 944
HpyF3I	CTNAG	3 cut(s)	564, 762, 975
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	2 cut(s)	473, 641
Hsp92II	CATG	7 cut(s)	50, 218, 307, 598, 612, 705, 730
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	5 cut(s)	202, 237, 279, 357, 765
LmnI	GCTCC	2 cut(s)	702, 852
LweI	GCATC	2 cut(s)	884, 947
MaeI	CTAG	2 cut(s)	498, 780
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	5 cut(s)	204, 239, 281, 359, 767
MboI	GATC	5 cut(s)	202, 237, 279, 357, 765
MboII	GAAGA	4 cut(s)	287, 479, 805, 943
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	202, 765
MhlI	GDGCHC	1 cut(s)	57
MluCI	AATT	5 cut(s)	23, 326, 417, 645, 740
MlyI	GAGTC	1 cut(s)	583
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	7 cut(s)	59, 181, 217, 332, 405, 769, 825
MroXI	GAANNNNTTC	1 cut(s)	483
MseI	TTAA	5 cut(s)	177, 399, 432, 743, 909
MslI	CAYNNNNRTG	1 cut(s)	447
MspA1I	CMGCKG	2 cut(s)	833, 916
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	3 cut(s)	476, 690, 808
MspR9I	CCNGG	3 cut(s)	662, 808, 902
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	662, 902
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	5 cut(s)	141, 170, 545, 881, 944
NciI	CCSGG	1 cut(s)	808
NdeII	GATC	5 cut(s)	202, 237, 279, 357, 765
NlaIII	CATG	7 cut(s)	50, 218, 307, 598, 612, 705, 730
NlaIV	GGNNCC	1 cut(s)	659
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	1 cut(s)	612
OliI	CACNNNNGTG	1 cut(s)	447
PasI	CCCWGGG	1 cut(s)	661
PdmI	GAANNNNTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	43, 389
PflFI	GACNNNGTC	2 cut(s)	305, 508
PleI	GAGTC	1 cut(s)	582
PpsI	GAGTC	1 cut(s)	582
Psp6I	CCWGG	2 cut(s)	660, 900
PspGI	CCWGG	2 cut(s)	660, 900
PspN4I	GGNNCC	1 cut(s)	659
PspPI	GGNCC	1 cut(s)	657
PsuI	RGATCY	2 cut(s)	202, 765
PsyI	GACNNNGTC	2 cut(s)	305, 508
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	3 cut(s)	502, 523, 675
RsaNI	GTAC	3 cut(s)	501, 522, 674
RseI	CAYNNNNRTG	1 cut(s)	447
SaqAI	TTAA	5 cut(s)	177, 399, 432, 743, 909
Sau3AI	GATC	5 cut(s)	202, 237, 279, 357, 765
Sau96I	GGNCC	1 cut(s)	657
ScaI	AGTACT	1 cut(s)	523
SchI	GAGTC	1 cut(s)	583
ScrFI	CCNGG	3 cut(s)	662, 808, 902
SduI	GDGCHC	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	884, 947
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	3 cut(s)	15, 431, 769
SmoI	CTYRAG	3 cut(s)	15, 431, 769
Sse9I	AATT	5 cut(s)	23, 326, 417, 645, 740
SsiI	CCGC	5 cut(s)	173, 185, 221, 507, 916
SspMI	CTAG	2 cut(s)	498, 780
StyD4I	CCNGG	3 cut(s)	660, 806, 900
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	2 cut(s)	353, 374
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	3 cut(s)	261, 577, 714
TasI	AATT	5 cut(s)	23, 326, 417, 645, 740
TatI	WGTACW	2 cut(s)	521, 673
TfiI	GAWTC	2 cut(s)	43, 389
Tru1I	TTAA	5 cut(s)	177, 399, 432, 743, 909
Tru9I	TTAA	5 cut(s)	177, 399, 432, 743, 909
TscAI	CASTG	3 cut(s)	62, 295, 467
TseFI	GTSAC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	17, 231
TspRI	CASTG	3 cut(s)	62, 295, 467
Tth111I	GACNNNGTC	2 cut(s)	305, 508
Vha464I	CTTAAG	1 cut(s)	431
VneI	GTGCAC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	483
XspI	CTAG	2 cut(s)	498, 780
ZraI	GACGTC	1 cut(s)	642
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.