Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015485.1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

13967 .. 15595

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015485.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgcctgaggccatggcggtaaaatcggccaagatgagggactcagagtctattcaatacgagcttcaggtttatagggacttgaacaatcatggtgatcgttgccccttcattattgagcattatggcgaagaggtaacaaagagcgatcagggtgaagaggtttacaacttggcgttggaagttgcctggggaagttttgcaaggctgataaaggttttcggtcgtgggttgccggaatccgatgtgcggcggtatacctgtgaccttcttgaagggattagacacatccacaagtgtggttatgtccaatgtgactcgaagccacataatattcttgttgtggaaaatgaaaatgatgatgtctataggttggtggccaaagtggctgatttggggttggctaagaagaaggatgaggttcaagaaaggtggagaggcacacctatgtacttgttccggagactatactttataatgaacaagaggagccaagtgatatttgggccttggggtgcattgttcttgagatgctcaccggatagtgccctcgaaaccatttttacgatcataagagtgacaccctctacgttgttgatggaatggtgcctaaaatcccggatacaatctcagagtgagaagtcatcggagatctcaccggactctagtgacgggtggccggtcgcggactctggtgatcggaatcctgcaaccgactaccagaatccagccaccggtgaccggaatcccgaatccggctaccagacctgtaaccgaaatccggcattcgatttcattgccccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

268

Amino Acids

30.61

Weight (kDa)

5.5

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	257
AccII	CGCG	1 cut(s)	686
AccIII	TCCGGA	1 cut(s)	459
AciI	CCGC	4 cut(s)	17, 250, 253, 686
AcoI	YGGCCR	3 cut(s)	27, 378, 677
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	6 cut(s)	36, 249, 734, 741, 755, 781
AgeI	ACCGGT	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	56, 85, 275, 425
AhdI	GACNNNNNGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	457
Aor13HI	TCCGGA	1 cut(s)	459
AoxI	GGCC	5 cut(s)	9, 27, 378, 506, 677
AsiGI	ACCGGT	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	6 cut(s)	107, 167, 528, 648, 707, 749
AxyI	CCTNAGG	1 cut(s)	6
BaeGI	GKGCMC	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	606
BccI	CCATC	1 cut(s)	592
BcgI	CGANNNNNNTGC	1 cut(s)	779
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	615
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	666
BfmI	CTRYAG	1 cut(s)	367
BfuI	GTATCC	1 cut(s)	615
BglI	GCCNNNNNGGC	1 cut(s)	386
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
Bme1390I	CCNGG	2 cut(s)	190, 619
BmeRI	GACNNNNNGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	2 cut(s)	491, 608
BmrFI	CCNGG	2 cut(s)	190, 619
BmsI	GCATC	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	547
BpuMI	CCSGG	1 cut(s)	619
BsaBI	GATNNNNATC	1 cut(s)	702
BsaJI	CCNNGG	3 cut(s)	12, 189, 509
BsaWI	WCCGGW	5 cut(s)	459, 538, 658, 734, 741
Bsc4I	CCNNNNNNNGG	6 cut(s)	36, 249, 734, 741, 755, 781
Bse118I	RCCGGY	2 cut(s)	679, 734
Bse21I	CCTNAGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	702
BseAI	TCCGGA	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	3 cut(s)	12, 189, 509
BseGI	GGATG	2 cut(s)	288, 421
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	6 cut(s)	36, 249, 734, 741, 755, 781
BseMI	GCAATG	1 cut(s)	795
BseMII	CTCAG	2 cut(s)	57, 644
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	686
Bsh1285I	CGRYCG	2 cut(s)	226, 684
BshFI	GGCC	5 cut(s)	11, 29, 380, 508, 679
BshNI	GGYRCC	1 cut(s)	606
BshTI	ACCGGT	1 cut(s)	734
BsiEI	CGRYCG	2 cut(s)	226, 684
BslFI	GGGAC	2 cut(s)	53, 92
BslI	CCNNNNNNNGG	6 cut(s)	36, 249, 734, 741, 755, 781
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	2 cut(s)	53, 92
BsmI	GAATGC	1 cut(s)	785
BsnI	GGCC	5 cut(s)	11, 29, 380, 508, 679
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	459
Bsp143I	GATC	5 cut(s)	97, 148, 567, 651, 697
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	4 cut(s)	17, 250, 253, 686
BspANI	GGCC	5 cut(s)	11, 29, 380, 508, 679
BspCNI	CTCAG	2 cut(s)	56, 643
BspEI	TCCGGA	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	686
BspLI	GGNNCC	2 cut(s)	491, 608
BspT107I	GGYRCC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	795
BsrFI	RCCGGY	2 cut(s)	679, 734
BssAI	RCCGGY	2 cut(s)	679, 734
BssECI	CCNNGG	3 cut(s)	12, 189, 509
BssMI	GATC	5 cut(s)	97, 148, 567, 651, 697
BssNAI	GTATAC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	12, 509
Bst1107I	GTATAC	1 cut(s)	258
Bst2UI	CCWGG	1 cut(s)	190
Bst6I	CTCTTC	2 cut(s)	126, 153
BstDEI	CTNAG	4 cut(s)	6, 43, 405, 630
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	737
BstF5I	GGATG	2 cut(s)	288, 421
BstFNI	CGCG	1 cut(s)	686
BstKTI	GATC	5 cut(s)	100, 151, 570, 654, 700
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	5 cut(s)	97, 148, 567, 651, 697
BstMCI	CGRYCG	2 cut(s)	226, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	188, 617
BstSFI	CTRYAG	1 cut(s)	367
BstSLI	GKGCMC	1 cut(s)	550
BstUI	CGCG	1 cut(s)	686
BstX2I	RGATCY	1 cut(s)	651
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	651
BstZ17I	GTATAC	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	6
BsuI	GTATCC	1 cut(s)	615
BsuRI	GGCC	5 cut(s)	11, 29, 380, 508, 679
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	288, 421
Cfr10I	RCCGGY	2 cut(s)	679, 734
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	734
CspCI	CAANNNNNGTGG	2 cut(s)	413, 448
CviAII	CATG	2 cut(s)	13, 92
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	4 cut(s)	6, 43, 405, 630
DpnI	GATC	5 cut(s)	99, 150, 569, 653, 699
DpnII	GATC	5 cut(s)	97, 148, 567, 651, 697
DriI	GACNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	3 cut(s)	27, 378, 677
Eam1104I	CTCTTC	2 cut(s)	126, 153
Eam1105I	GACNNNNNGTC	1 cut(s)	46
EarI	CTCTTC	2 cut(s)	126, 153
Eco130I	CCWWGG	2 cut(s)	12, 509
Eco57I	CTGAAG	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	737
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	12, 509
ErhI	CCWWGG	2 cut(s)	12, 509
FaeI	CATG	2 cut(s)	16, 95
FaqI	GGGAC	2 cut(s)	53, 92
FatI	CATG	2 cut(s)	12, 91
FblI	GTMKAC	1 cut(s)	257
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	2 cut(s)	275, 428
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	666
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	5 cut(s)	11, 29, 380, 508, 679
Hin1II	CATG	2 cut(s)	16, 95
HphI	GGTGA	6 cut(s)	107, 167, 528, 648, 707, 749
Hpy166II	GTNNAC	2 cut(s)	166, 258
Hpy188I	TCNGA	5 cut(s)	46, 244, 633, 649, 702
Hpy188III	TCNNGA	5 cut(s)	272, 425, 460, 526, 749
Hpy8I	GTNNAC	2 cut(s)	166, 258
HpyAV	CCTTC	4 cut(s)	118, 269, 278, 406
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	3 cut(s)	203, 518, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	4 cut(s)	6, 43, 405, 630
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	2 cut(s)	16, 95
Kpn2I	TCCGGA	1 cut(s)	459
Kzo9I	GATC	5 cut(s)	97, 148, 567, 651, 697
LmnI	GCTCC	1 cut(s)	489
LweI	GCATC	1 cut(s)	521
MaeI	CTAG	1 cut(s)	666
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	7 cut(s)	136, 263, 314, 577, 668, 737, 770
MalI	GATC	5 cut(s)	99, 150, 569, 653, 699
MboI	GATC	5 cut(s)	97, 148, 567, 651, 697
MboII	GAAGA	3 cut(s)	143, 170, 421
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	380
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	5 cut(s)	35, 56, 311, 656, 683
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	30, 127, 154, 412, 431, 480, 560, 595
Mox20I	TGGCCA	1 cut(s)	380
MroI	TCCGGA	1 cut(s)	459
MscI	TGGCCA	1 cut(s)	380
MslI	CAYNNNNRTG	3 cut(s)	297, 446, 575
Msp20I	TGGCCA	1 cut(s)	380
MspR9I	CCNGG	2 cut(s)	190, 619
Mva1269I	GAATGC	1 cut(s)	785
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	686
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	97, 148, 567, 651, 697
NlaIII	CATG	2 cut(s)	16, 95
NlaIV	GGNNCC	2 cut(s)	491, 608
NmuCI	GTSAC	5 cut(s)	263, 314, 577, 668, 737
OliI	CACNNNNGTG	1 cut(s)	297
PctI	GAATGC	1 cut(s)	785
PfeI	GAWTC	5 cut(s)	239, 703, 724, 745, 752
PfoI	TCCNGGA	1 cut(s)	617
PinAI	ACCGGT	1 cut(s)	734
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	5 cut(s)	35, 55, 311, 656, 683
PpsI	GAGTC	5 cut(s)	35, 55, 311, 656, 683
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	737
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	491, 608
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	651
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
RseI	CAYNNNNRTG	3 cut(s)	297, 446, 575
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	5 cut(s)	97, 148, 567, 651, 697
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	5 cut(s)	35, 56, 311, 656, 683
ScrFI	CCNGG	2 cut(s)	190, 619
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	367
SgrAI	CRCCGGYG	1 cut(s)	734
SmiMI	CAYNNNNRTG	3 cut(s)	297, 446, 575
SmlI	CTYRAG	1 cut(s)	526
SmoI	CTYRAG	1 cut(s)	526
SsiI	CCGC	4 cut(s)	17, 250, 253, 686
SspI	AATATT	1 cut(s)	334
SspMI	CTAG	1 cut(s)	666
StyD4I	CCNGG	2 cut(s)	188, 617
StyI	CCWWGG	2 cut(s)	12, 509
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	3 cut(s)	320, 552, 789
TaqII	GACCGA	1 cut(s)	212
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	5 cut(s)	239, 703, 724, 745, 752
TseFI	GTSAC	5 cut(s)	263, 314, 577, 668, 737
Tsp45I	GTSAC	5 cut(s)	263, 314, 577, 668, 737
TspDTI	ATGAA	4 cut(s)	100, 366, 494, 784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XmiI	GTMKAC	1 cut(s)	257
XspI	CTAG	1 cut(s)	666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.