Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

13387925 .. 13388857

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAAGAGGAAGGCGGAAGTGAGTCTTGGTTCAGGTTACAGGTGGATCAGAGGGAAGAAGATCGGAGAAGGAGGGTTCGGCTCCGTGTTCGTCGCGTTTGCCAAGATACCCCATATTGGAGAACACCACTTGCCCGAGGCAATGGCCATGAAATCCGCAAAGATCAAGGATTCCGATTCCATTCAATACGAGCTGGAGGTTTACAGGGAGTTGGAAACCAAGGGTGGTTGTTGCCCCTTCATCATTGAGCACTACGGTGAAGAGGTGACTTGGAGTAACGACGGGGAAGAGGTCTACAACTTGGCCATGGAAGTTGCATGGGGAAGCCTTGCGAGGTACTTAAAGATTATAGGTCATGGGTTGCCGGAATATCATGTGAGGCGGTACACCGGTGACATTCTCAGAGGGGTCAAACACATACGTAGGTGCGGGTACGTGCATTGTGATTTGAAACCAGAGAATATTTTGCTTGTGAAGAATGATGAGGGCTTTCCCTTTACGGCCAAAGTGGGTGATTTTGGGTTGGCCAAGAAGAATGAGGTTCGAGATAGATGGAGAGGCACGCCGATGTACTTGTCCCCGGAGACTGTCTTGTACAATGAGCAGGAACATGCCAGTGATATATGGGCCGTTGGGTTAATCGTTCTGGAGATGCTGACCGGTGAACGCGCCCGGGAGCATTTCTACCATCGTGACAGCAAGACACTCTACATTGTGGATGGAATGAAGCCCAAAATCCCTGATACGATCTCGATCCATGCTAGGGAGTTTCTGGAGTTTTGCCTAGCTCCAGAAACATGGGAAAGATGGTCAGCTGAGGAGCTCCTCTACCATCCTTTTGTTGCAGATGTTGTTAAGCCCAGAAACTTGGGAAAATGGTCAACTGAGGAGCTTCACAATCATCCTTTTGTTTCAGATGTTGTTAGCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

311

Amino Acids

35.59

Weight (kDa)

6.22

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	17 - 281	4.6e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 275	2.1e-22	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	2 cut(s)	95, 669
AciI	CCGC	4 cut(s)	14, 156, 382, 429
AclWI	GGATC	2 cut(s)	53, 748
AcoI	YGGCCR	4 cut(s)	144, 303, 501, 525
AfaI	GTAC	5 cut(s)	338, 386, 434, 572, 596
AfiI	CCNNNNNNNGG	2 cut(s)	116, 763
AgeI	ACCGGT	2 cut(s)	389, 659
AgsI	TTSAA	2 cut(s)	185, 451
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AleI	CACNNNNGTG	1 cut(s)	255
AluBI	AGCT	6 cut(s)	193, 788, 815, 823, 892, 927
AluI	AGCT	6 cut(s)	193, 788, 815, 823, 892, 927
Alw21I	GWGCWC	2 cut(s)	252, 825
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	2 cut(s)	53, 748
Ama87I	CYCGRG	2 cut(s)	134, 672
AoxI	GGCC	5 cut(s)	144, 303, 501, 525, 627
AsiGI	ACCGGT	2 cut(s)	389, 659
AspLEI	GCGC	1 cut(s)	671
AspS9I	GGNCC	1 cut(s)	627
AsuC2I	CCSGG	3 cut(s)	581, 673, 674
AsuHPI	GGTGA	5 cut(s)	269, 277, 404, 524, 674
AvaI	CYCGRG	2 cut(s)	134, 672
BaeI	ACNNNNGTAYC	2 cut(s)	376, 409
BalI	TGGCCA	3 cut(s)	146, 305, 527
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	2 cut(s)	252, 825
BbvCI	CCTCAGC	1 cut(s)	816
BccI	CCATC	5 cut(s)	546, 696, 713, 801, 840
BceAI	ACGGC	2 cut(s)	516, 614
BcnI	CCSGG	3 cut(s)	581, 673, 674
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	2 cut(s)	762, 785
Bme1390I	CCNGG	3 cut(s)	581, 673, 674
BmeT110I	CYCGRG	2 cut(s)	134, 672
BmgT120I	GGNCC	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	3 cut(s)	581, 673, 674
BmsI	GCATC	1 cut(s)	642
BpmI	CTGGAG	4 cut(s)	215, 668, 774, 794
Bpu10I	CCTNAGC	1 cut(s)	816
BpuMI	CCSGG	3 cut(s)	581, 673, 674
BsaAI	YACGTR	2 cut(s)	422, 436
BsaBI	GATNNNNATC	1 cut(s)	752
BsaJI	CCNNGG	5 cut(s)	135, 219, 306, 579, 672
BsaWI	WCCGGW	2 cut(s)	389, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 763
Bse118I	RCCGGY	2 cut(s)	389, 659
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	752
BseDI	CCNNGG	5 cut(s)	135, 219, 306, 579, 672
BseGI	GGATG	3 cut(s)	724, 832, 901
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	2 cut(s)	116, 763
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	3 cut(s)	415, 807, 876
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	3 cut(s)	815, 833, 902
Bsh1236I	CGCG	2 cut(s)	95, 669
BshFI	GGCC	5 cut(s)	146, 305, 503, 527, 629
BshTI	ACCGGT	2 cut(s)	389, 659
BsiHKAI	GWGCWC	2 cut(s)	252, 825
BsiHKCI	CYCGRG	2 cut(s)	134, 672
BsiSI	CCGG	5 cut(s)	365, 390, 581, 660, 673
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	116, 763
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	562
BsnI	GGCC	5 cut(s)	146, 305, 503, 527, 629
BsoBI	CYCGRG	2 cut(s)	134, 672
Bsp1286I	GDGCHC	2 cut(s)	252, 825
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	5 cut(s)	45, 60, 162, 747, 753
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	4 cut(s)	14, 156, 382, 429
BspANI	GGCC	5 cut(s)	146, 305, 503, 527, 629
BspCNI	CTCAG	3 cut(s)	414, 808, 877
BspFNI	CGCG	2 cut(s)	95, 669
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	53, 748
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	2 cut(s)	389, 659
BsrGI	TGTACA	1 cut(s)	594
BsrI	ACTGG	1 cut(s)	615
BssAI	RCCGGY	2 cut(s)	389, 659
BssECI	CCNNGG	5 cut(s)	135, 219, 306, 579, 672
BssMI	GATC	5 cut(s)	45, 60, 162, 747, 753
BssT1I	CCWWGG	2 cut(s)	219, 306
Bst4CI	ACNGT	2 cut(s)	257, 589
Bst6I	CTCTTC	2 cut(s)	255, 282
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	422, 436
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	3 cut(s)	401, 816, 885
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	3 cut(s)	724, 832, 901
BstFNI	CGCG	2 cut(s)	95, 669
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	5 cut(s)	48, 63, 165, 750, 756
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	45, 60, 162, 747, 753
BstNSI	RCATGY	1 cut(s)	614
BstSCI	CCNGG	3 cut(s)	579, 671, 672
BstSNI	TACGTA	1 cut(s)	422
BstUI	CGCG	2 cut(s)	95, 669
BstXI	CCANNNNNNTGG	2 cut(s)	798, 868
BsuRI	GGCC	5 cut(s)	146, 305, 503, 527, 629
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	3 cut(s)	724, 832, 901
BtsIMutI	CAGTG	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	563
CfoI	GCGC	1 cut(s)	671
Cfr10I	RCCGGY	2 cut(s)	389, 659
Cfr13I	GGNCC	1 cut(s)	627
Cfr9I	CCCGGG	1 cut(s)	672
Csp6I	GTAC	5 cut(s)	337, 385, 433, 571, 595
CspAI	ACCGGT	2 cut(s)	389, 659
CviAII	CATG	8 cut(s)	148, 307, 318, 356, 374, 611, 758, 798
CviQI	GTAC	5 cut(s)	337, 385, 433, 571, 595
DdeI	CTNAG	3 cut(s)	401, 816, 885
DpnI	GATC	5 cut(s)	47, 62, 164, 749, 755
DpnII	GATC	5 cut(s)	45, 60, 162, 747, 753
EaeI	YGGCCR	4 cut(s)	144, 303, 501, 525
Eam1104I	CTCTTC	2 cut(s)	255, 282
EarI	CTCTTC	2 cut(s)	255, 282
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	823
Eco105I	TACGTA	1 cut(s)	422
Eco130I	CCWWGG	2 cut(s)	219, 306
Eco24I	GRGCYC	1 cut(s)	825
Eco53kI	GAGCTC	1 cut(s)	823
Eco88I	CYCGRG	2 cut(s)	134, 672
EcoICRI	GAGCTC	1 cut(s)	823
EcoT14I	CCWWGG	2 cut(s)	219, 306
EcoT38I	GRGCYC	1 cut(s)	825
ErhI	CCWWGG	2 cut(s)	219, 306
FaeI	CATG	8 cut(s)	151, 310, 321, 359, 377, 614, 761, 801
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	8 cut(s)	147, 306, 317, 355, 373, 610, 757, 797
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	294
FokI	GGATG	3 cut(s)	731, 819, 888
FriOI	GRGCYC	1 cut(s)	825
FspBI	CTAG	2 cut(s)	762, 785
GlaI	GCGC	1 cut(s)	670
GsuI	CTGGAG	4 cut(s)	215, 668, 774, 794
HaeIII	GGCC	5 cut(s)	146, 305, 503, 527, 629
HapII	CCGG	5 cut(s)	365, 390, 581, 660, 673
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	8 cut(s)	151, 310, 321, 359, 377, 614, 761, 801
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	882
HindII	GTYRAC	1 cut(s)	882
HinfI	GANTC	3 cut(s)	22, 170, 176
HpaII	CCGG	5 cut(s)	365, 390, 581, 660, 673
HphI	GGTGA	5 cut(s)	269, 277, 404, 524, 674
Hpy166II	GTNNAC	5 cut(s)	202, 295, 387, 665, 882
Hpy188I	TCNGA	5 cut(s)	50, 65, 175, 404, 916
Hpy188III	TCNNGA	6 cut(s)	545, 647, 692, 751, 773, 791
Hpy8I	GTNNAC	5 cut(s)	202, 295, 387, 665, 882
Hpy99I	CGWCG	2 cut(s)	95, 284
HpyAV	CCTTC	3 cut(s)	4, 62, 247
HpyCH4III	ACNGT	2 cut(s)	257, 589
HpyCH4IV	ACGT	2 cut(s)	421, 435
HpyCH4V	TGCA	3 cut(s)	317, 439, 845
HpyF3I	CTNAG	3 cut(s)	401, 816, 885
HpySE526I	ACGT	2 cut(s)	421, 435
Hsp92II	CATG	8 cut(s)	151, 310, 321, 359, 377, 614, 761, 801
HspAI	GCGC	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	45, 60, 162, 747, 753
LmnI	GCTCC	6 cut(s)	86, 676, 793, 820, 828, 889
LweI	GCATC	1 cut(s)	642
MaeI	CTAG	2 cut(s)	762, 785
MaeII	ACGT	2 cut(s)	421, 435
MaeIII	GTNAC	5 cut(s)	35, 265, 275, 392, 692
MalI	GATC	5 cut(s)	47, 62, 164, 749, 755
MboI	GATC	5 cut(s)	45, 60, 162, 747, 753
MboII	GAAGA	7 cut(s)	16, 67, 70, 272, 299, 487, 544
MhlI	GDGCHC	2 cut(s)	252, 825
MlsI	TGGCCA	3 cut(s)	146, 305, 527
MluNI	TGGCCA	3 cut(s)	146, 305, 527
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	192
Mox20I	TGGCCA	3 cut(s)	146, 305, 527
MscI	TGGCCA	3 cut(s)	146, 305, 527
MseI	TTAA	3 cut(s)	341, 638, 855
MslI	CAYNNNNRTG	3 cut(s)	255, 566, 615
Msp20I	TGGCCA	3 cut(s)	146, 305, 527
MspA1I	CMGCKG	1 cut(s)	815
MspI	CCGG	5 cut(s)	365, 390, 581, 660, 673
MspR9I	CCNGG	3 cut(s)	581, 673, 674
MvnI	CGCG	2 cut(s)	95, 669
NciI	CCSGG	3 cut(s)	581, 673, 674
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	45, 60, 162, 747, 753
NlaIII	CATG	8 cut(s)	151, 310, 321, 359, 377, 614, 761, 801
NlaIV	GGNNCC	1 cut(s)	82
NmuCI	GTSAC	3 cut(s)	265, 392, 692
NspI	RCATGY	1 cut(s)	614
OliI	CACNNNNGTG	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	170, 176
PinAI	ACCGGT	2 cut(s)	389, 659
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	2 cut(s)	422, 436
Psp124BI	GAGCTC	1 cut(s)	825
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	627
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	5 cut(s)	338, 386, 434, 572, 596
RsaNI	GTAC	5 cut(s)	337, 385, 433, 571, 595
RseI	CAYNNNNRTG	3 cut(s)	255, 566, 615
SacI	GAGCTC	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	341, 638, 855
Sau3AI	GATC	5 cut(s)	45, 60, 162, 747, 753
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	3 cut(s)	581, 673, 674
SduI	GDGCHC	2 cut(s)	252, 825
SfaNI	GCATC	1 cut(s)	642
SgrAI	CRCCGGYG	1 cut(s)	389
SmaI	CCCGGG	1 cut(s)	674
SmiMI	CAYNNNNRTG	3 cut(s)	255, 566, 615
SnaBI	TACGTA	1 cut(s)	422
SsiI	CCGC	4 cut(s)	14, 156, 382, 429
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	762, 785
SstI	GAGCTC	1 cut(s)	825
StyD4I	CCNGG	3 cut(s)	579, 671, 672
StyI	CCWWGG	2 cut(s)	219, 306
TaaI	ACNGT	2 cut(s)	257, 589
TaiI	ACGT	2 cut(s)	424, 438
TaqI	TCGA	2 cut(s)	544, 752
TatI	WGTACW	2 cut(s)	570, 594
TfiI	GAWTC	2 cut(s)	170, 176
Tru1I	TTAA	3 cut(s)	341, 638, 855
Tru9I	TTAA	3 cut(s)	341, 638, 855
TscAI	CASTG	1 cut(s)	622
TseFI	GTSAC	3 cut(s)	265, 392, 692
Tsp45I	GTSAC	3 cut(s)	265, 392, 692
TspDTI	ATGAA	4 cut(s)	17, 164, 229, 740
TspGWI	ACGGA	1 cut(s)	73
TspMI	CCCGGG	1 cut(s)	672
TspRI	CASTG	1 cut(s)	622
XceI	RCATGY	1 cut(s)	614
XmaI	CCCGGG	1 cut(s)	672
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	2 cut(s)	762, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.