Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039625.1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Forward (+)

3795 .. 4793

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgaagtggaaggcggaagtgagcttgggttcagatcataagtggcggagaggaaacaagatcggcgaaggaggcttgggttcaggtcataagttgcggagaggaaacaagatcggcaaaggaggctggggttcaggtcataggtggcagagaggaaagaagatcggcgaaggacgcttcggttctgtgttcattgcattatccatgaggccctatatcatctccgatcatgtgccaatgccgaaggccatggctatgaaatcagcaaagatcaaggattccgattccattcgatacgagctggaggtgtatagggagttgattaacgagggcggttattgctcctccatcattgagcactatggtgaggaggtaacacggagtgatgagggtgaagagatctataacttggccttggaaatagcatggggaagccttgctaagttgatagagaagaccgtttatgggttgggagaaaaccatataaggcggtatacccgtgatattcttaaaggtattgaacacatacacaagagtgggtatgtccactgtgatttgaaaccagataacatcttgcttgtgaaaaatgatgattatattgatcaatatctctgtccctatgtggccaaagttggtgacttggggctggccaagaaggaggaggaggttcaggaacgctggagaggcacacccatgtacttgtctcctgaagctgtagaagacaatgtccaagaacgacccagtgacatatgggctgtggggtgtattgttctggaaatgcttacgggagagtgcccccggaatcatttctatgatggtgagagtcgtactctctacattgttgatggaatggagccaaaaattcctgatacgatctcgagtcaagctaaggattttctacagcattgcctagctacggttcctgagcaaaggtggacagctgaagaccttcaatctcatcccttcgtggcaaatcttgaattagatagtgataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

332

Amino Acids

37.68

Weight (kDa)

5.88

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	494
AciI	CCGC	5 cut(s)	14, 46, 97, 333, 490
AcoI	YGGCCR	2 cut(s)	624, 648
AcsI	RAATTY	1 cut(s)	861
AcuI	CTGAAG	2 cut(s)	729, 963
AdeI	CACNNNGTG	1 cut(s)	383
AfaI	GTAC	2 cut(s)	698, 829
AfiI	CCNNNNNNNGG	2 cut(s)	465, 916
AgsI	TTSAA	4 cut(s)	521, 559, 953, 980
AleI	CACNNNNGTG	2 cut(s)	363, 534
AluBI	AGCT	6 cut(s)	24, 301, 713, 887, 914, 941
AluI	AGCT	6 cut(s)	24, 301, 713, 887, 914, 941
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	708
Ama87I	CYCGRG	1 cut(s)	877
AoxI	GGCC	5 cut(s)	209, 246, 411, 624, 648
ApoI	RAATTY	1 cut(s)	861
Asp700I	GAANNNNTTC	2 cut(s)	806, 948
AspS9I	GGNCC	1 cut(s)	210
AsuC2I	CCSGG	1 cut(s)	799
AsuHPI	GGTGA	4 cut(s)	377, 404, 647, 830
AvaI	CYCGRG	1 cut(s)	877
BaeGI	GKGCMC	1 cut(s)	797
BalI	TGGCCA	2 cut(s)	626, 650
BbsI	GAAGAC	3 cut(s)	461, 726, 951
Bbv12I	GWGCWC	1 cut(s)	360
BccI	CCATC	3 cut(s)	356, 809, 839
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	799
BcoDI	GTCTC	1 cut(s)	708
BfaI	CTAG	1 cut(s)	911
BfmI	CTRYAG	2 cut(s)	714, 899
BglII	AGATCT	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	799
BmeT110I	CYCGRG	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	2 cut(s)	855, 921
BmrFI	CCNGG	1 cut(s)	799
BmrI	ACTGGG	1 cut(s)	735
BmuI	ACTGGG	1 cut(s)	735
BpiI	GAAGAC	3 cut(s)	461, 726, 951
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	2 cut(s)	323, 700
Bpu10I	CCTNAGC	2 cut(s)	888, 924
BpuMI	CCSGG	1 cut(s)	799
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	3 cut(s)	249, 414, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 916
Bse1I	ACTGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	192, 904
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	249, 414, 797
BseGI	GGATG	1 cut(s)	958
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	2 cut(s)	465, 916
BseMI	GCAATG	2 cut(s)	192, 904
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	1 cut(s)	741
BseRI	GAGGAG	4 cut(s)	334, 383, 674, 677
BseSI	GKGCMC	1 cut(s)	797
BseYI	CCCAGC	1 cut(s)	126
BshFI	GGCC	5 cut(s)	211, 248, 413, 626, 650
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	877
BsiSI	CCGG	1 cut(s)	799
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	2 cut(s)	465, 916
BsmAI	GTCTC	1 cut(s)	708
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	5 cut(s)	211, 248, 413, 626, 650
BsoBI	CYCGRG	1 cut(s)	877
Bsp1286I	GDGCHC	2 cut(s)	360, 797
Bsp143I	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	5 cut(s)	14, 46, 97, 333, 490
BspANI	GGCC	5 cut(s)	211, 248, 413, 626, 650
BspCNI	CTCAG	1 cut(s)	916
BspLI	GGNNCC	2 cut(s)	855, 921
BsrDI	GCAATG	2 cut(s)	192, 904
BsrI	ACTGG	1 cut(s)	741
BssECI	CCNNGG	3 cut(s)	249, 414, 797
BssMI	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
BssNAI	GTATAC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	249, 414
Bst1107I	GTATAC	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	460, 551, 919
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	648
BstDEI	CTNAG	3 cut(s)	441, 888, 924
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	958
BstKTI	GATC	9 cut(s)	37, 63, 114, 165, 229, 273, 402, 604, 876
BstMAI	GTCTC	1 cut(s)	708
BstMBI	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
BstMWI	GCNNNNNNNGC	5 cut(s)	72, 123, 174, 339, 684
BstSCI	CCNGG	1 cut(s)	797
BstSFI	CTRYAG	2 cut(s)	714, 899
BstSLI	GKGCMC	1 cut(s)	797
BstV2I	GAAGAC	3 cut(s)	461, 726, 951
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BstZ17I	GTATAC	1 cut(s)	495
BsuRI	GGCC	5 cut(s)	211, 248, 413, 626, 650
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	958
BtsIMutI	CAGTG	2 cut(s)	547, 748
Cac8I	GCNNGC	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	697, 828
CviAII	CATG	5 cut(s)	205, 230, 250, 426, 694
CviQI	GTAC	2 cut(s)	697, 828
DdeI	CTNAG	3 cut(s)	441, 888, 924
DpnI	GATC	9 cut(s)	36, 62, 113, 164, 228, 272, 401, 603, 875
DpnII	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
DraIII	CACNNNGTG	1 cut(s)	383
EaeI	YGGCCR	2 cut(s)	624, 648
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	2 cut(s)	29, 61
Eco130I	CCWWGG	2 cut(s)	249, 414
Eco57I	CTGAAG	2 cut(s)	729, 963
Eco88I	CYCGRG	1 cut(s)	877
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT14I	CCWWGG	2 cut(s)	249, 414
ErhI	CCWWGG	2 cut(s)	249, 414
FaeI	CATG	5 cut(s)	208, 233, 253, 429, 697
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	5 cut(s)	204, 229, 249, 425, 693
FauNDI	CATATG	1 cut(s)	749
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	494
FokI	GGATG	1 cut(s)	945
FspBI	CTAG	1 cut(s)	911
GsaI	CCCAGC	1 cut(s)	130
GsuI	CTGGAG	2 cut(s)	323, 700
HaeIII	GGCC	5 cut(s)	211, 248, 413, 626, 650
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	208, 233, 253, 429, 697
HinfI	GANTC	5 cut(s)	278, 284, 802, 823, 880
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	4 cut(s)	377, 404, 647, 830
Hpy166II	GTNNAC	3 cut(s)	495, 547, 936
Hpy188I	TCNGA	3 cut(s)	34, 226, 283
Hpy188III	TCNNGA	7 cut(s)	671, 707, 773, 866, 877, 923, 977
Hpy8I	GTNNAC	3 cut(s)	495, 547, 936
HpyAV	CCTTC	7 cut(s)	4, 62, 164, 238, 649, 959, 973
HpyCH4III	ACNGT	3 cut(s)	460, 551, 919
HpyCH4V	TGCA	1 cut(s)	197
HpyF10VI	GCNNNNNNNGC	5 cut(s)	72, 123, 174, 339, 684
HpyF3I	CTNAG	3 cut(s)	441, 888, 924
Hsp92II	CATG	5 cut(s)	208, 233, 253, 429, 697
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
LmnI	GCTCC	2 cut(s)	347, 853
MaeI	CTAG	1 cut(s)	911
MaeIII	GTNAC	3 cut(s)	373, 635, 743
MalI	GATC	9 cut(s)	36, 62, 113, 164, 228, 272, 401, 603, 875
MboI	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
MboII	GAAGA	5 cut(s)	172, 407, 466, 731, 956
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	360, 797
MlsI	TGGCCA	2 cut(s)	626, 650
MluCI	AATT	3 cut(s)	861, 980, 994
MluNI	TGGCCA	2 cut(s)	626, 650
MlyI	GAGTC	2 cut(s)	832, 889
Mox20I	TGGCCA	2 cut(s)	626, 650
MroXI	GAANNNNTTC	2 cut(s)	806, 948
MscI	TGGCCA	2 cut(s)	626, 650
MseI	TTAA	2 cut(s)	324, 510
MslI	CAYNNNNRTG	5 cut(s)	254, 363, 534, 692, 810
Msp20I	TGGCCA	2 cut(s)	626, 650
MspA1I	CMGCKG	1 cut(s)	941
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	1 cut(s)	799
MwoI	GCNNNNNNNGC	5 cut(s)	72, 123, 174, 339, 684
NciI	CCSGG	1 cut(s)	799
NcoI	CCATGG	1 cut(s)	249
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
NlaIII	CATG	5 cut(s)	208, 233, 253, 429, 697
NlaIV	GGNNCC	2 cut(s)	855, 921
NmuCI	GTSAC	2 cut(s)	635, 743
OliI	CACNNNNGTG	2 cut(s)	363, 534
PaeR7I	CTCGAG	1 cut(s)	877
PdmI	GAANNNNTTC	2 cut(s)	806, 948
PfeI	GAWTC	3 cut(s)	278, 284, 802
PflFI	GACNNNGTC	1 cut(s)	725
PleI	GAGTC	2 cut(s)	831, 888
PpsI	GAGTC	2 cut(s)	831, 888
PspFI	CCCAGC	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	855, 921
PspPI	GGNCC	1 cut(s)	210
PsuI	RGATCY	1 cut(s)	399
PsyI	GACNNNGTC	1 cut(s)	725
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	2 cut(s)	698, 829
RsaNI	GTAC	2 cut(s)	697, 828
RseI	CAYNNNNRTG	5 cut(s)	254, 363, 534, 692, 810
SaqAI	TTAA	2 cut(s)	324, 510
Sau3AI	GATC	9 cut(s)	34, 60, 111, 162, 226, 270, 399, 601, 873
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	832, 889
ScrFI	CCNGG	1 cut(s)	799
SduI	GDGCHC	2 cut(s)	360, 797
SfcI	CTRYAG	2 cut(s)	714, 899
Sfr274I	CTCGAG	1 cut(s)	877
SlaI	CTCGAG	1 cut(s)	877
SmiMI	CAYNNNNRTG	5 cut(s)	254, 363, 534, 692, 810
SmlI	CTYRAG	1 cut(s)	877
SmoI	CTYRAG	1 cut(s)	877
Sse9I	AATT	3 cut(s)	861, 980, 994
SsiI	CCGC	5 cut(s)	14, 46, 97, 333, 490
SspMI	CTAG	1 cut(s)	911
StyD4I	CCNGG	1 cut(s)	797
StyI	CCWWGG	2 cut(s)	249, 414
TaaI	ACNGT	3 cut(s)	460, 551, 919
TaqI	TCGA	2 cut(s)	292, 878
TasI	AATT	3 cut(s)	861, 980, 994
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	278, 284, 802
Tru1I	TTAA	2 cut(s)	324, 510
Tru9I	TTAA	2 cut(s)	324, 510
TscAI	CASTG	2 cut(s)	554, 748
TseFI	GTSAC	2 cut(s)	635, 743
Tsp45I	GTSAC	2 cut(s)	635, 743
TspDTI	ATGAA	3 cut(s)	17, 181, 272
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	2 cut(s)	554, 748
Tth111I	GACNNNGTC	1 cut(s)	725
XapI	RAATTY	1 cut(s)	861
XhoI	CTCGAG	1 cut(s)	877
XmiI	GTMKAC	1 cut(s)	494
XmnI	GAANNNNTTC	2 cut(s)	806, 948
XspI	CTAG	1 cut(s)	911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.