Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

50519128 .. 50519993

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGAGGAAGGCGGAAGTGAGAAACAAGATCGGAGAAGGAGGCTTCGGCTCCGTGTTCCTTTCATTTTCCAAGAGACCCTATATCAAGATCGACCACATGCCCGTGGCCATGGCCATGAAATCGGCAAAGATCAAGGATTCAGATTCCATTCGATACGAGCTCGAGGTGTTTAGGGAGTTGAATAACAAGGGTGGTTCTTGCCCCTTCATCATTGAGCACTATGGTGAAGAGGTGACATGGAGTGACGACGGGGAAGAGGTCTATAACTTGGCCTTGCAAGTTGCATGGGGAAGCCTTGCGAGGCTGATAAAAATTATCGGTCATGGGTTGCCAGAATCCGATGTGAGGCGTGGTTATGTTCACTGTGATTTGAAACCAGATAAGATCTTGCTTGTGGAAAATGAAGATGATAGTGCCTATACCTTGGTAGCCAAAGTGGGTGACTTGGGGTTGGCCAAGGAGGAGGTTCAAGAAAGGTGGAGAGGCACTCCCATGTTCTTGTCTCCGGAGACTGTCGTGTACAATGAGCAAGAACAAGCCAGTGATATTTGGGCTGTGGGGTGTATTGTTCTTGAAATGCTTACTGGAGAGCGCCCCGGGAATCATTTCTACGATCATGAAAGCGATACTCTCTACGTTGTTGATGGAATGGAGCCTAAAATTCCTGATACGATCTCGAGTCTTGCTAGGGAGTTTCTAGGGTTTTGCCTAGCCAAGGAAACTCCGGAAAGGTGGACAGCTGAAGAGCTTCTATCTCATCCCTTTGTGGCAAATGTTGTTAGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

263

Amino Acids

29.78

Weight (kDa)

5.01

Isoelectric Point (pI)

39.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 257	2.1e-26	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	117 - 253	6.7e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	508, 727
AciI	CCGC	1 cut(s)	14
AcoI	YGGCCR	3 cut(s)	108, 114, 456
AcsI	RAATTY	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	765
AfaI	GTAC	2 cut(s)	524, 788
AfiI	CCNNNNNNNGG	2 cut(s)	348, 718
AgsI	TTSAA	4 cut(s)	184, 376, 473, 578
AleI	CACNNNNGTG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	163, 743, 751
AluI	AGCT	3 cut(s)	163, 743, 751
Alw21I	GWGCWC	2 cut(s)	165, 222
Alw26I	GTCTC	3 cut(s)	70, 506, 510
Ama87I	CYCGRG	3 cut(s)	164, 599, 679
Aor13HI	TCCGGA	2 cut(s)	508, 727
AoxI	GGCC	4 cut(s)	108, 114, 273, 456
ApoI	RAATTY	1 cut(s)	663
Asp700I	GAANNNNTTC	2 cut(s)	608, 750
AspLEI	GCGC	1 cut(s)	597
AsuC2I	CCSGG	2 cut(s)	600, 601
AsuHPI	GGTGA	3 cut(s)	239, 247, 455
AvaI	CYCGRG	3 cut(s)	164, 599, 679
BalI	TGGCCA	3 cut(s)	110, 116, 458
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	165, 222
BccI	CCATC	1 cut(s)	641
BcnI	CCSGG	2 cut(s)	600, 601
BcoDI	GTCTC	3 cut(s)	70, 506, 510
BfaI	CTAG	3 cut(s)	690, 701, 713
BfoI	RGCGCY	1 cut(s)	598
BglII	AGATCT	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	600, 601
BmeT110I	CYCGRG	3 cut(s)	164, 599, 679
BmiI	GGNNCC	2 cut(s)	52, 657
BmrFI	CCNGG	2 cut(s)	600, 601
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpmI	CTGGAG	1 cut(s)	609
BpuMI	CCSGG	2 cut(s)	600, 601
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	7 cut(s)	105, 111, 426, 459, 598, 599, 717
BsaWI	WCCGGW	2 cut(s)	508, 727
Bsc4I	CCNNNNNNNGG	2 cut(s)	348, 718
Bse1I	ACTGG	2 cut(s)	543, 592
BseAI	TCCGGA	2 cut(s)	508, 727
BseDI	CCNNGG	7 cut(s)	105, 111, 426, 459, 598, 599, 717
BseGI	GGATG	1 cut(s)	760
BseLI	CCNNNNNNNGG	2 cut(s)	348, 718
BseNI	ACTGG	2 cut(s)	543, 592
BseRI	GAGGAG	1 cut(s)	479
BshFI	GGCC	4 cut(s)	110, 116, 275, 458
BsiHKAI	GWGCWC	2 cut(s)	165, 222
BsiHKCI	CYCGRG	3 cut(s)	164, 599, 679
BsiSI	CCGG	3 cut(s)	509, 600, 728
BslI	CCNNNNNNNGG	2 cut(s)	348, 718
BsmAI	GTCTC	3 cut(s)	70, 506, 510
BsnI	GGCC	4 cut(s)	110, 116, 275, 458
Bso31I	GGTCTC	1 cut(s)	70
BsoBI	CYCGRG	3 cut(s)	164, 599, 679
Bsp1286I	GDGCHC	2 cut(s)	165, 222
Bsp13I	TCCGGA	2 cut(s)	508, 727
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	4 cut(s)	110, 116, 275, 458
BspEI	TCCGGA	2 cut(s)	508, 727
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	2 cut(s)	52, 657
BspQI	GCTCTTC	1 cut(s)	741
BspTNI	GGTCTC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	2 cut(s)	543, 592
BssECI	CCNNGG	7 cut(s)	105, 111, 426, 459, 598, 599, 717
BssMI	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
BssT1I	CCWWGG	4 cut(s)	111, 426, 459, 717
Bst4CI	ACNGT	2 cut(s)	368, 517
Bst6I	CTCTTC	3 cut(s)	225, 252, 741
BstAUI	TGTACA	1 cut(s)	522
BstDSI	CCRYGG	2 cut(s)	105, 111
BstENI	CCTNNNNNAGG	1 cut(s)	716
BstF5I	GGATG	1 cut(s)	760
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	6 cut(s)	33, 93, 135, 390, 619, 678
BstMAI	GTCTC	3 cut(s)	70, 506, 510
BstMBI	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	598, 599
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	110, 116, 275, 458
BtgI	CCRYGG	2 cut(s)	105, 111
BtsCI	GGATG	1 cut(s)	760
BtsIMutI	CAGTG	2 cut(s)	364, 550
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	1 cut(s)	597
Cfr9I	CCCGGG	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	523, 787
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
CviAII	CATG	8 cut(s)	100, 112, 118, 240, 288, 326, 496, 620
CviQI	GTAC	2 cut(s)	523, 787
DpnI	GATC	6 cut(s)	32, 92, 134, 389, 618, 677
DpnII	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
EaeI	YGGCCR	3 cut(s)	108, 114, 456
Eam1104I	CTCTTC	3 cut(s)	225, 252, 741
EarI	CTCTTC	3 cut(s)	225, 252, 741
EciI	GGCGGA	1 cut(s)	29
Ecl136II	GAGCTC	1 cut(s)	163
Eco130I	CCWWGG	4 cut(s)	111, 426, 459, 717
Eco24I	GRGCYC	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	70
Eco53kI	GAGCTC	1 cut(s)	163
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	3 cut(s)	164, 599, 679
EcoICRI	GAGCTC	1 cut(s)	163
EcoNI	CCTNNNNNAGG	1 cut(s)	716
EcoT14I	CCWWGG	4 cut(s)	111, 426, 459, 717
EcoT38I	GRGCYC	1 cut(s)	165
ErhI	CCWWGG	4 cut(s)	111, 426, 459, 717
FaeI	CATG	8 cut(s)	103, 115, 121, 243, 291, 329, 499, 623
FatI	CATG	8 cut(s)	99, 111, 117, 239, 287, 325, 495, 619
FokI	GGATG	1 cut(s)	747
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	690, 701, 713
GlaI	GCGC	1 cut(s)	596
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	4 cut(s)	110, 116, 275, 458
HapII	CCGG	3 cut(s)	509, 600, 728
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	8 cut(s)	103, 115, 121, 243, 291, 329, 499, 623
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HinfI	GANTC	5 cut(s)	140, 146, 338, 604, 682
HpaII	CCGG	3 cut(s)	509, 600, 728
HphI	GGTGA	3 cut(s)	239, 247, 455
Hpy166II	GTNNAC	3 cut(s)	364, 523, 738
Hpy188I	TCNGA	3 cut(s)	35, 145, 343
Hpy188III	TCNNGA	8 cut(s)	88, 473, 509, 575, 620, 668, 679, 728
Hpy8I	GTNNAC	3 cut(s)	364, 523, 738
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	4, 32, 217
HpyCH4III	ACNGT	2 cut(s)	368, 517
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	2 cut(s)	280, 287
HpySE526I	ACGT	1 cut(s)	639
Hsp92II	CATG	8 cut(s)	103, 115, 121, 243, 291, 329, 499, 623
HspAI	GCGC	1 cut(s)	595
Kpn2I	TCCGGA	2 cut(s)	508, 727
Kzo9I	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
LguI	GCTCTTC	1 cut(s)	741
LmnI	GCTCC	2 cut(s)	56, 655
LpnPI	CCDG	8 cut(s)	348, 393, 522, 556, 573, 613, 681, 741
MaeI	CTAG	3 cut(s)	690, 701, 713
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	235, 245, 443
MalI	GATC	6 cut(s)	32, 92, 134, 389, 618, 677
MboI	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
MboII	GAAGA	5 cut(s)	16, 242, 269, 419, 758
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	2 cut(s)	165, 222
MlsI	TGGCCA	3 cut(s)	110, 116, 458
MluCI	AATT	2 cut(s)	315, 663
MluNI	TGGCCA	3 cut(s)	110, 116, 458
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	9 cut(s)	35, 160, 226, 253, 297, 342, 457, 460, 479
Mox20I	TGGCCA	3 cut(s)	110, 116, 458
MroI	TCCGGA	2 cut(s)	508, 727
MroXI	GAANNNNTTC	2 cut(s)	608, 750
MscI	TGGCCA	3 cut(s)	110, 116, 458
MslI	CAYNNNNRTG	4 cut(s)	104, 116, 225, 494
Msp20I	TGGCCA	3 cut(s)	110, 116, 458
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	3 cut(s)	509, 600, 728
MspR9I	CCNGG	2 cut(s)	600, 601
NciI	CCSGG	2 cut(s)	600, 601
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
NlaIII	CATG	8 cut(s)	103, 115, 121, 243, 291, 329, 499, 623
NlaIV	GGNNCC	2 cut(s)	52, 657
NmuCI	GTSAC	3 cut(s)	235, 245, 443
NspI	RCATGY	1 cut(s)	103
OliI	CACNNNNGTG	1 cut(s)	225
PaeR7I	CTCGAG	2 cut(s)	164, 679
PagI	TCATGA	1 cut(s)	619
PciSI	GCTCTTC	1 cut(s)	741
PdmI	GAANNNNTTC	2 cut(s)	608, 750
PfeI	GAWTC	4 cut(s)	140, 146, 338, 604
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	52, 657
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	2 cut(s)	524, 788
RsaNI	GTAC	2 cut(s)	523, 787
RseI	CAYNNNNRTG	4 cut(s)	104, 116, 225, 494
SacI	GAGCTC	1 cut(s)	165
SapI	GCTCTTC	1 cut(s)	741
Sau3AI	GATC	6 cut(s)	30, 90, 132, 387, 616, 675
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	600, 601
SduI	GDGCHC	2 cut(s)	165, 222
Sfr274I	CTCGAG	2 cut(s)	164, 679
SlaI	CTCGAG	2 cut(s)	164, 679
SmaI	CCCGGG	1 cut(s)	601
SmiMI	CAYNNNNRTG	4 cut(s)	104, 116, 225, 494
SmlI	CTYRAG	2 cut(s)	164, 679
SmoI	CTYRAG	2 cut(s)	164, 679
Sse9I	AATT	2 cut(s)	315, 663
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	3 cut(s)	690, 701, 713
SstI	GAGCTC	1 cut(s)	165
StyD4I	CCNGG	2 cut(s)	598, 599
StyI	CCWWGG	4 cut(s)	111, 426, 459, 717
TaaI	ACNGT	2 cut(s)	368, 517
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	4 cut(s)	93, 154, 165, 680
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	2 cut(s)	315, 663
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	140, 146, 338, 604
TscAI	CASTG	2 cut(s)	371, 550
TseFI	GTSAC	3 cut(s)	235, 245, 443
Tsp45I	GTSAC	3 cut(s)	235, 245, 443
TspDTI	ATGAA	6 cut(s)	17, 54, 134, 199, 420, 636
TspGWI	ACGGA	1 cut(s)	43
TspMI	CCCGGG	1 cut(s)	599
TspRI	CASTG	2 cut(s)	371, 550
XagI	CCTNNNNNAGG	1 cut(s)	716
XapI	RAATTY	1 cut(s)	663
XceI	RCATGY	1 cut(s)	103
XhoI	CTCGAG	2 cut(s)	164, 679
XmaI	CCCGGG	1 cut(s)	599
XmnI	GAANNNNTTC	2 cut(s)	608, 750
XspI	CTAG	3 cut(s)	690, 701, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.