Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001294

Physical Location & Seq

Genomic Coordinates Reverse (-)

11395862 .. 11396585

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001176

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCAGTAAAATCGGCCAAGATGAGGGACTCAGAGTCTATTCAATACGAGCTTCAGGTTTATATGGACTTGAACAATCATGGTGGTCGTTGCCCCTTCATTATTGAGCATTATGGCGAAGAGGTAACATGGAGCGATGAGCGTGAAGAGGTTTACAACTTGGCGTTGGAAGTTGCATGGGGGAAGTCTTGCAAGGCTGATAAAGGTTTTCGGTCATGGCCACAGAATATTCTTGCAGTGGAACATGAAGATGATGATGTCTATAGGTTCGTGGCCAAAGTGGCTGATTTGGGGTTGGCTATGAAGAAGGATGAGGTTCAAGAAAGGTGGAGAGGCACACCTATGTACTTGTCTCCGGAGACTATACTCTATAATGAACAAGAAGAGCTAAGTGATATTTGGGCCTTGGGGTGCATTGTTCTTGAGATGCTCACCGGAGAGTGCCCTCGAAACCATTTTTACAATCATAAGAGTGACACCCTCTACGTTGTTGATGGAATGGTGCCTAAAATCCCGGATACAATCTCAAGTCTTGCAAGGGATTTTCTAGGTTGTTGCGCAGCTGAGGAAAGGTCCACTACTGAAGAGGTTCTGTCTCATCCCTTTGTAGCAGATGTTGTTAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

210

Amino Acids

24.03

Weight (kDa)

4.69

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 203	9e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	89 - 191	1.7e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001294)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22070 FvH4_5g34520 FvH4_5g34890 FvH4_7g15420
malus_domestica	MD02G1267200.v1.1 MD11G1159500.v1.1 MD12G1002200.v1.1 MD17G1219600.v1.1
prunus_persica	Prupe.3G098700_v2.0.a1 Prupe.3G098900_v2.0.a1 Prupe.3G099000_v2.0.a1 Prupe.3G099900_v2.0.a1 Prupe.3G102600_v2.0.a1 Prupe.3G118700_v2.0.a1 Prupe.3G119200_v2.0.a1 Prupe.3G119300_v2.0.a1 Prupe.3G120500_v2.0.a1 Prupe.3G120700_v2.0.a1 Prupe.3G121000_v2.0.a1
pyrus_communis	pycom09g14640 pycom09g14650
rosa_chinensis	RchiOBHm_Chr1g0357741 RchiOBHm_Chr2g0133111
rosa_laevigata	RLG00000001176 RLG00000019308 RLG00000028001
rosa_multiflora	Rmu_sc0004657.1_g000015 Rmu_sc0011910.1_g000015 Rmu_sc0015485.1_g000003 Rmu_sc0039625.1_g000001 Rmu_ssc0000399.1_g000022
rosa_roxburghii	Rroxscaffold_2G00111420 Rroxscaffold_2G00111450 Rroxscaffold_4G00298560 Rroxscaffold_7G00177180
rosa_rugosa	Rorug01G0258200 Rorug02G0309700 Rorug06G0211500.1 Rorug07G0288700
rosa_samantha	Rh1AG272100 Rh1BG239300 Rh1CG256000 Rh1DG267600 Rh2AG362100 Rh2CG344500 Rh2CG345400 Rh2DG384900 Rh6AG321800 Rh6BG329100 Rh6BG329200 Rh6CG335000 Rh6DG322100
rosa_wichuraiana	Rw1G024280 Rw2G029440 Rw7G036850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	502
AccIII	TCCGGA	1 cut(s)	355
AcoI	YGGCCR	3 cut(s)	15, 218, 273
AcuI	CTGAAG	2 cut(s)	38, 603
AfaI	GTAC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	44, 73, 320
AhdI	GACNNNNNGTC	1 cut(s)	34
AluBI	AGCT	3 cut(s)	52, 388, 563
AluI	AGCT	3 cut(s)	52, 388, 563
Alw26I	GTCTC	3 cut(s)	353, 357, 600
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	4 cut(s)	15, 218, 273, 402
ApeKI	GCWGC	1 cut(s)	560
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	560
AspS9I	GGNCC	2 cut(s)	402, 573
AsuC2I	CCSGG	1 cut(s)	515
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	573
BaeGI	GKGCMC	1 cut(s)	446
BalI	TGGCCA	2 cut(s)	220, 275
BanI	GGYRCC	1 cut(s)	502
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	1 cut(s)	488
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	1 cut(s)	515
BcoDI	GTCTC	3 cut(s)	353, 357, 600
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	262
BfuI	GTATCC	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	515
Bme18I	GGWCC	1 cut(s)	573
BmeRI	GACNNNNNGTC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	402, 573
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	515
BmsI	GCATC	1 cut(s)	417
Bpu10I	CCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	443, 511
BpuMI	CCSGG	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	405
BsaWI	WCCGGW	2 cut(s)	355, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
BseAI	TCCGGA	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	405
BseGI	GGATG	2 cut(s)	316, 598
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	45, 555
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	17, 220, 275, 404
BshNI	GGYRCC	1 cut(s)	502
BsiSI	CCGG	3 cut(s)	356, 435, 515
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	3 cut(s)	353, 357, 600
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	4 cut(s)	17, 220, 275, 404
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp13I	TCCGGA	1 cut(s)	355
BspANI	GGCC	4 cut(s)	17, 220, 275, 404
BspCNI	CTCAG	2 cut(s)	44, 556
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	504
BspQI	GCTCTTC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	502
BssECI	CCNNGG	1 cut(s)	405
BssT1I	CCWWGG	1 cut(s)	405
Bst6I	CTCTTC	4 cut(s)	114, 141, 378, 579
BstDEI	CTNAG	3 cut(s)	31, 389, 564
BstF5I	GGATG	2 cut(s)	316, 598
BstHHI	GCGC	1 cut(s)	560
BstMAI	GTCTC	3 cut(s)	353, 357, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	513
BstSFI	CTRYAG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	1 cut(s)	572
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	4 cut(s)	17, 220, 275, 404
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	316, 598
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
CfoI	GCGC	1 cut(s)	560
Cfr13I	GGNCC	2 cut(s)	402, 573
Csp6I	GTAC	1 cut(s)	346
CspCI	CAANNNNNGTGG	4 cut(s)	64, 99, 308, 343
CviAII	CATG	5 cut(s)	80, 129, 177, 216, 245
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	3 cut(s)	31, 389, 564
DriI	GACNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	3 cut(s)	15, 218, 273
Eam1104I	CTCTTC	4 cut(s)	114, 141, 378, 579
Eam1105I	GACNNNNNGTC	1 cut(s)	34
EarI	CTCTTC	4 cut(s)	114, 141, 378, 579
Eco130I	CCWWGG	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	38, 603
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	5 cut(s)	83, 132, 180, 219, 248
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	5 cut(s)	79, 128, 176, 215, 244
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	2 cut(s)	323, 585
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	548
FspI	TGCGCA	1 cut(s)	559
GlaI	GCGC	1 cut(s)	559
GluI	GCNGC	1 cut(s)	561
HaeIII	GGCC	4 cut(s)	17, 220, 275, 404
HapII	CCGG	3 cut(s)	356, 435, 515
HhaI	GCGC	1 cut(s)	560
Hin1II	CATG	5 cut(s)	83, 132, 180, 219, 248
Hin6I	GCGC	1 cut(s)	558
HinP1I	GCGC	1 cut(s)	558
HinfI	GANTC	2 cut(s)	29, 35
HpaII	CCGG	3 cut(s)	356, 435, 515
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	154, 576
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	320, 356, 422
Hpy8I	GTNNAC	2 cut(s)	154, 576
HpyAV	CCTTC	2 cut(s)	106, 301
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	5 cut(s)	176, 192, 236, 414, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	31, 389, 564
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	83, 132, 180, 219, 248
HspAI	GCGC	1 cut(s)	558
Kpn2I	TCCGGA	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	4 cut(s)	41, 369, 448, 528
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	2 cut(s)	124, 473
MboII	GAAGA	6 cut(s)	131, 158, 260, 316, 395, 596
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	2 cut(s)	220, 275
MluNI	TGGCCA	2 cut(s)	220, 275
MlyI	GAGTC	2 cut(s)	23, 44
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	18, 115, 142, 307, 326, 456, 491, 559, 580
Mox20I	TGGCCA	2 cut(s)	220, 275
MroI	TCCGGA	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	588
MscI	TGGCCA	2 cut(s)	220, 275
MslI	CAYNNNNRTG	3 cut(s)	249, 341, 471
Msp20I	TGGCCA	2 cut(s)	220, 275
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	3 cut(s)	356, 435, 515
MspR9I	CCNGG	1 cut(s)	515
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	515
NlaIII	CATG	5 cut(s)	83, 132, 180, 219, 248
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	473
NsbI	TGCGCA	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	588
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	23, 43
PpsI	GAGTC	2 cut(s)	23, 43
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	402, 573
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	3 cut(s)	249, 341, 471
SapI	GCTCTTC	1 cut(s)	378
SatI	GCNGC	1 cut(s)	561
Sau96I	GGNCC	2 cut(s)	402, 573
SchI	GAGTC	2 cut(s)	23, 44
ScrFI	CCNGG	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	1 cut(s)	417
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	3 cut(s)	249, 341, 471
SmlI	CTYRAG	2 cut(s)	422, 526
SmoI	CTYRAG	2 cut(s)	422, 526
SspI	AATATT	1 cut(s)	229
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	405
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	448
TaqII	GACCGA	1 cut(s)	201
TatI	WGTACW	1 cut(s)	345
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	88, 261, 317, 390
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	588
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.