pycom17g09400

Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
7152765 .. 7156785
4021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1335 bp
ATGATTTGGGGGACTATTCGCCGTAAAGTAGCTTCGTCTGAGGTGCTGGGACAAGCGTGGAAGGTTAGGCATGGAGTGTCCGCCCCAAGCTGTTACCGAGCTGTACCAAAAGAGGCTTTGTTTATTGGGAAAGGATATGAGTGCGTTCAGAGAGCAAGCTACCACATTGTTTTAGGCAATAATGCTCCATCACTAAGCAGGGAAGCCGCTGCCCTATGTCAAACAGATTCTTTTATCCGATTGAGCAGTAGATCATTTTCTTCTGACAGTGGAGATGTGGTAGAAGCTGTTGTTCCTTTCATGGGTGAATCTATTACTGATGGCACTTTGGCAACATTCTTAAAGAAACCCGGTGACAGAGTTGCAGTTGACGAGCCTATTGCCCAAATTGAAACGGATAAGGTGACAATTGATGTTGTTAGTCCTGAAGCTGGTGTCATTAAAGAGTTTGTGGCTAAGGAAGGCGAGACTGTGGAACCAGGTGTAAAGATTGCAATCATTTCCAAATCTGGTGAAGGTATAGAACAAGTTGCGCCATCAGAGCAGGCTGATGCTAAGCCAGAACCTACTAAAACGAAGGAAAGTGCAGAAAAGCAAGTCCCCAAAGCAGAACCTGCCCCTGTCAAGGATGCACAACCCAAAACTAAGGCACCTTCTCCACCACCACCGCCACCACCTAAACAGGCGGCTTCAGAACTCCGGCTTCCTCCCAAGGATAGGGAAAGACGAGTTCCTATGACAAGACTAAGGAAGCGGGTGGCAATACGCTTGAAAGATTCTCAGAATACATTTGCTCTCCTAACCACATTTAATGAGATTGATATGACTAACTTGATGAAGCTCCGTTCAGACTATAAGGAAACCTTTGTTGAAAAGCATGGTGTGAAATTGGGATTTATGTCCGGCTTTGTGAAAGCTGCTGTTAGCGCACTTGAGCAGTTGCCAATTGTCAATGCTGTCATTGATGGTGACGATATCATATACAGAGATTACATTGATATCAGCATAGCTGTTGGGACACCAAAGGGCCTTGTCGTTCCAGTTGTCCGCAATGCTGGTGGTATGAACTTTGCTCAGATAGAGAAGGAAATCAATACCCTGGCTAAGAAAGCAGCTGATGGTTCTATATCAATTGATGAAATGGCTGGAGGGACGTTCACAATATCAAATGGGGGCGTATATGGAAGCCTTCTAAGCACACCAATCATCAATCCTCCACAGTCAGCAATTTTGGGTATGCACTCAATAGTGAACCGTCCCATGGTCGTTGGGGGGAACGTTGTACCAAGGCCAATGATGTACATTGCATTGACATACGATCGATCGCCTCATTGA

Protein Analysis

445

Amino Acids

47.87

Weight (kDa)

8.71

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 98 - 167 5.6e-16 Biotin-requiring enzyme
BSH_CusB PF25919 114 - 167 6.8e-06 CusB, barrel-sandwich hybrid domain
2-oxoacid_dh PF00198 240 - 440 9.7e-71 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000387)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G26910 AT4G26910 AT4G26910 AT5G55070 AT5G55070
fragaria_vesca FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_3g23070 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960 FvH4_6g42960
malus_domestica MD03G1198100.v1.1 MD09G1110700.v1.1 MD17G1098600.v1.1
prunus_persica Prupe.3G215800_v2.0.a1 Prupe.4G216900_v2.0.a1 Prupe.4G216900_v2.0.a1
pyrus_communis pycom03g14960 pycom09g03320 pycom17g09400
rosa_chinensis RchiOBHm_Chr2g0119431 RchiOBHm_Chr2g0119441 RchiOBHm_Chr2g0158941 RchiOBHm_Chr5g0040581 RchiOBHm_Chr5g0052421 RchiOBHm_Chr5g0052431
rosa_laevigata RLG00000002270 RLG00000012296 RLG00000021125 RLG00000031115 RLG00000033989
rosa_multiflora Rmu_co8099772.1_g000001 Rmu_co8181026.1_g000001 Rmu_co8403685.1_g000001 Rmu_sc0001893.1_g000003 Rmu_sc0004787.1_g000003 Rmu_sc0007967.1_g000007 Rmu_sc0010369.1_g000001 Rmu_ssc0000174.1_g000008
rosa_roxburghii Rroxscaffold_1G00040090 Rroxscaffold_1G00040800 Rroxscaffold_1G00049000 Rroxscaffold_2G00090860 Rroxscaffold_2G00122640 Rroxscaffold_2G00127540 Rroxscaffold_2G00128360 Rroxscaffold_3G00249890 Rroxscaffold_4G00314140 Rroxscaffold_5G00345820 Rroxscaffold_5G00345830 Rroxscaffold_5G00371680 Rroxscaffold_7G00164980 Rroxscaffold_7G00209200
rosa_rugosa Rorug01G0153500.1 Rorug02G0473100 Rorug02G0473200 Rorug02G0473200 Rorug03G0343200 Rorug05G0185800
rosa_samantha Rh1AG155300 Rh1AG275400 Rh1BG123600 Rh1CG026200 Rh1CG145600 Rh2AG539600 Rh2BG510900 Rh2BG552500 Rh2CG522900 Rh2DG522600 Rh2DG522700 Rh2DG562200 Rh3CG234300 Rh3CG302000 Rh3CG302100 Rh4DG305100 Rh5AG250900 Rh5AG272600 Rh5AG475300 Rh5BG276800 Rh5BG355700 Rh5CG308700 Rh5DG285400 Rh6BG136500 Rh6BG167900 Rh6BG220000 Rh7AG327600 Rh7AG349200 Rh7AG349300 Rh7AG349400 Rh7AG353200 Rh7CG344900 Rh7CG366500 Rh7CG366600
rosa_wichuraiana Rw1G002110 Rw2G044660 Rw3G008210 Rw4G016310 Rw4G019560 Rw5G025520 Rw5G030020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 622
AccB1I GGYRCC 1 cut(s) 649
AciI CCGC 6 cut(s) 81, 207, 668, 686, 754, 1048
AclI AACGTT 1 cut(s) 1278
AcuI CTGAAG 2 cut(s) 447, 675
AfaI GTAC 3 cut(s) 105, 1284, 1301
AfiI CCNNNNNNNGG 5 cut(s) 302, 431, 625, 717, 1261
AgsI TTSAA 3 cut(s) 392, 772, 872
AjnI CCWGG 2 cut(s) 478, 1098
Alw26I GTCTC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 614
AoxI GGCC 2 cut(s) 1027, 1289
ApeKI GCWGC 3 cut(s) 209, 917, 1112
AspLEI GCGC 2 cut(s) 535, 929
AspS9I GGNCC 1 cut(s) 1027
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 5 cut(s) 317, 365, 415, 524, 980
BanI GGYRCC 1 cut(s) 649
BarI GAAGNNNNNNTAC 2 cut(s) 16, 48
BbvI GCAGC 3 cut(s) 196, 904, 1124
BccI CCATC 5 cut(s) 196, 314, 544, 959, 1112
BceAI ACGGC 1 cut(s) 6
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BciT130I CCWGG 2 cut(s) 480, 1100
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 461
BfuAI ACCTGC 1 cut(s) 622
BisI GCNGC 5 cut(s) 207, 210, 687, 918, 1113
BlpI GCTNAGC 1 cut(s) 555
BlsI GCNGC 5 cut(s) 208, 211, 688, 919, 1114
Bme1390I CCNGG 3 cut(s) 351, 480, 1100
BmgT120I GGNCC 1 cut(s) 1027
BmiI GGNNCC 2 cut(s) 477, 651
BmrFI CCNGG 3 cut(s) 351, 480, 1100
BmsI GCATC 2 cut(s) 541, 619
BpmI CTGGAG 1 cut(s) 1167
Bpu10I CCTNAGC 1 cut(s) 456
Bpu1102I GCTNAGC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 953
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 1321
BsaBI GATNNNNATC 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 711, 1098, 1260, 1286
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 5 cut(s) 302, 431, 625, 717, 1261
Bse1I ACTGG 1 cut(s) 1040
Bse3DI GCAATG 2 cut(s) 1057, 1302
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 2 cut(s) 480, 1100
BseCI ATCGAT 1 cut(s) 1321
BseDI CCNNGG 4 cut(s) 711, 1098, 1260, 1286
BseGI GGATG 1 cut(s) 634
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 5 cut(s) 302, 431, 625, 717, 1261
BseMI GCAATG 2 cut(s) 1057, 1302
BseMII CTCAG 3 cut(s) 30, 794, 1088
BseNI ACTGG 1 cut(s) 1040
BseXI GCAGC 3 cut(s) 196, 904, 1124
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 606
Bsh1285I CGRYCG 2 cut(s) 1321, 1325
BshFI GGCC 2 cut(s) 1029, 1291
BshNI GGYRCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 1321
BsiEI CGRYCG 2 cut(s) 1321, 1325
BsiSI CCGG 3 cut(s) 351, 700, 903
BslFI GGGAC 6 cut(s) 25, 63, 584, 1030, 1165, 1242
BslI CCNNNNNNNGG 5 cut(s) 302, 431, 625, 717, 1261
BsmAI GTCTC 1 cut(s) 461
BsmFI GGGAC 6 cut(s) 25, 63, 584, 1030, 1165, 1242
BsnI GGCC 2 cut(s) 1029, 1291
Bsp1407I TGTACA 1 cut(s) 1299
Bsp143I GATC 3 cut(s) 251, 1318, 1322
Bsp1720I GCTNAGC 1 cut(s) 555
Bsp19I CCATGG 1 cut(s) 1260
BspACI CCGC 6 cut(s) 81, 207, 668, 686, 754, 1048
BspANI GGCC 2 cut(s) 1029, 1291
BspCNI CTCAG 3 cut(s) 31, 793, 1087
BspDI ATCGAT 1 cut(s) 1321
BspLI GGNNCC 2 cut(s) 477, 651
BspMI ACCTGC 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 649
BsrDI GCAATG 2 cut(s) 1057, 1302
BsrGI TGTACA 1 cut(s) 1299
BsrI ACTGG 1 cut(s) 1040
BssECI CCNNGG 4 cut(s) 711, 1098, 1260, 1286
BssMI GATC 3 cut(s) 251, 1318, 1322
BssT1I CCWWGG 3 cut(s) 711, 1260, 1286
Bst2UI CCWGG 2 cut(s) 480, 1100
Bst4CI ACNGT 4 cut(s) 269, 472, 1221, 1256
BstAPI GCANNNNNTGC 1 cut(s) 614
BstAUI TGTACA 1 cut(s) 1299
BstC8I GCNNGC 2 cut(s) 157, 546
BstDSI CCRYGG 1 cut(s) 1260
BstF5I GGATG 1 cut(s) 634
BstHHI GCGC 2 cut(s) 535, 929
BstKTI GATC 3 cut(s) 254, 1321, 1325
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 3 cut(s) 251, 1318, 1322
BstMCI CGRYCG 2 cut(s) 1321, 1325
BstMWI GCNNNNNNNGC 5 cut(s) 541, 614, 926, 1109, 1194
BstNI CCWGG 2 cut(s) 480, 1100
BstSCI CCNGG 3 cut(s) 349, 478, 1098
BstV1I GCAGC 3 cut(s) 196, 904, 1124
Bsu15I ATCGAT 1 cut(s) 1321
BsuRI GGCC 2 cut(s) 1029, 1291
BsuTUI ATCGAT 1 cut(s) 1321
BtgI CCRYGG 1 cut(s) 1260
BtsCI GGATG 1 cut(s) 634
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 622
Cac8I GCNNGC 2 cut(s) 157, 546
CaiI CAGNNNCTG 1 cut(s) 614
CfoI GCGC 2 cut(s) 535, 929
Cfr13I GGNCC 1 cut(s) 1027
ClaI ATCGAT 1 cut(s) 1321
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 3 cut(s) 104, 1283, 1300
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviAII CATG 4 cut(s) 71, 301, 878, 1261
CviQI GTAC 3 cut(s) 104, 1283, 1300
DpnI GATC 3 cut(s) 253, 1320, 1324
DpnII GATC 3 cut(s) 251, 1318, 1322
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 711, 1260, 1286
Eco32I GATATC 2 cut(s) 976, 1000
Eco57I CTGAAG 2 cut(s) 447, 675
EcoO109I RGGNCCY 1 cut(s) 1027
EcoRII CCWGG 2 cut(s) 478, 1098
EcoRV GATATC 2 cut(s) 976, 1000
EcoT14I CCWWGG 3 cut(s) 711, 1260, 1286
ErhI CCWWGG 3 cut(s) 711, 1260, 1286
FaeI CATG 4 cut(s) 74, 304, 881, 1264
FalI AAGNNNNNCTT 2 cut(s) 848, 880
FaqI GGGAC 6 cut(s) 25, 63, 584, 1030, 1165, 1242
FatI CATG 4 cut(s) 70, 300, 877, 1260
FauI CCCGC 1 cut(s) 747
Fnu4HI GCNGC 5 cut(s) 207, 210, 687, 918, 1113
FokI GGATG 1 cut(s) 641
Fsp4HI GCNGC 5 cut(s) 207, 210, 687, 918, 1113
GlaI GCGC 2 cut(s) 534, 928
GluI GCNGC 5 cut(s) 207, 210, 687, 918, 1113
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 1167
HaeIII GGCC 2 cut(s) 1029, 1291
HapII CCGG 3 cut(s) 351, 700, 903
HhaI GCGC 2 cut(s) 535, 929
Hin1II CATG 4 cut(s) 74, 304, 881, 1264
Hin6I GCGC 2 cut(s) 533, 927
HinP1I GCGC 2 cut(s) 533, 927
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 227, 308, 776
HpaII CCGG 3 cut(s) 351, 700, 903
HphI GGTGA 5 cut(s) 317, 365, 415, 524, 980
Hpy166II GTNNAC 3 cut(s) 370, 1158, 1252
Hpy188I TCNGA 9 cut(s) 40, 150, 239, 265, 541, 694, 783, 850, 1077
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 3 cut(s) 370, 1158, 1252
HpyAV CCTTC 7 cut(s) 55, 455, 509, 571, 663, 1078, 1199
HpyCH4III ACNGT 4 cut(s) 269, 472, 1221, 1256
HpyCH4IV ACGT 2 cut(s) 1154, 1278
HpyCH4V TGCA 6 cut(s) 365, 494, 587, 632, 1240, 1307
HpyF10VI GCNNNNNNNGC 5 cut(s) 541, 614, 926, 1109, 1194
HpySE526I ACGT 2 cut(s) 1154, 1278
Hsp92II CATG 4 cut(s) 74, 304, 881, 1264
HspAI GCGC 2 cut(s) 533, 927
Kzo9I GATC 3 cut(s) 251, 1318, 1322
LmnI GCTCC 2 cut(s) 190, 846
Lsp1109I GCAGC 3 cut(s) 196, 904, 1124
LweI GCATC 2 cut(s) 541, 619
MabI ACCWGGT 1 cut(s) 478
MaeII ACGT 2 cut(s) 1154, 1278
MaeIII GTNAC 4 cut(s) 92, 353, 403, 968
MalI GATC 3 cut(s) 253, 1320, 1324
MboI GATC 3 cut(s) 251, 1318, 1322
MboII GAAGA 1 cut(s) 252
MfeI CAATTG 3 cut(s) 408, 945, 1131
MluCI AATT 6 cut(s) 387, 408, 887, 945, 1131, 1227
MnlI CCTC 5 cut(s) 34, 106, 717, 1142, 1224
MseI TTAA 3 cut(s) 341, 441, 810
MspA1I CMGCKG 2 cut(s) 209, 1115
MspI CCGG 3 cut(s) 351, 700, 903
MspR9I CCNGG 3 cut(s) 351, 480, 1100
MunI CAATTG 3 cut(s) 408, 945, 1131
MvaI CCWGG 2 cut(s) 480, 1100
MwoI GCNNNNNNNGC 5 cut(s) 541, 614, 926, 1109, 1194
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 1 cut(s) 1260
NdeII GATC 3 cut(s) 251, 1318, 1322
NlaIII CATG 4 cut(s) 74, 304, 881, 1264
NlaIV GGNNCC 2 cut(s) 477, 651
NmuCI GTSAC 3 cut(s) 353, 403, 968
PfeI GAWTC 3 cut(s) 227, 308, 776
PkrI GCNGC 5 cut(s) 208, 211, 688, 919, 1114
Ple19I CGATCG 2 cut(s) 1321, 1325
Psp1406I AACGTT 1 cut(s) 1278
Psp6I CCWGG 2 cut(s) 478, 1098
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 478, 1098
PspN4I GGNNCC 2 cut(s) 477, 651
PspPI GGNCC 1 cut(s) 1027
PstNI CAGNNNCTG 1 cut(s) 614
PvuI CGATCG 2 cut(s) 1321, 1325
PvuII CAGCTG 1 cut(s) 1115
RsaI GTAC 3 cut(s) 105, 1284, 1301
RsaNI GTAC 3 cut(s) 104, 1283, 1300
SaqAI TTAA 3 cut(s) 341, 441, 810
SatI GCNGC 5 cut(s) 207, 210, 687, 918, 1113
Sau3AI GATC 3 cut(s) 251, 1318, 1322
Sau96I GGNCC 1 cut(s) 1027
ScrFI CCNGG 3 cut(s) 351, 480, 1100
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 2 cut(s) 541, 619
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 6 cut(s) 387, 408, 887, 945, 1131, 1227
SsiI CCGC 6 cut(s) 81, 207, 668, 686, 754, 1048
StyD4I CCNGG 3 cut(s) 349, 478, 1098
StyI CCWWGG 3 cut(s) 711, 1260, 1286
TaaI ACNGT 4 cut(s) 269, 472, 1221, 1256
TaiI ACGT 2 cut(s) 1157, 1281
TaqI TCGA 1 cut(s) 1321
TasI AATT 6 cut(s) 387, 408, 887, 945, 1131, 1227
TatI WGTACW 1 cut(s) 1299
TauI GCSGC 2 cut(s) 209, 689
TfiI GAWTC 3 cut(s) 227, 308, 776
Tru1I TTAA 3 cut(s) 341, 441, 810
Tru9I TTAA 3 cut(s) 341, 441, 810
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 3 cut(s) 353, 403, 968
TseI GCWGC 3 cut(s) 209, 917, 1112
Tsp45I GTSAC 3 cut(s) 353, 403, 968
TspDTI ATGAA 4 cut(s) 289, 851, 1079, 1152
TspGWI ACGGA 2 cut(s) 410, 833
TspRI CASTG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.