RchiOBHm_Chr3g0485801

Belongs to the Orn Lys Arg decarboxylase class-II family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000734
Physical Location & Seq
Forward (+)
32595657 .. 32598343
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGGCACATGGAAATGTAACCTTCCAATGGTCCAACCTTTCTACGCCATCAAGTGCAACCCACATCCGAATCTGCTCGCCACCTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGGAATTCTGTCTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCACATCATCTATGCTAATCCCTACAAAGCTAGCTCTCACATCAATTTCCCATTGAGTTCCAAGTTCGGAACTCTCCCTGAAGAAGTGTCTTTGCTCCTCCAAGCAGCTCAAACTGCAAGACTCAGAGTAGCTGGGGTTTCATTTCACATAGGAACAAGGTTCGAAAAAACGCTAGGTGCTAATCGGGCTGTGAGCAAGGGACTAGCGCCCAGGCGGTGCCTACGTTTCTTGATGGTCTGTGGCAAAGCTACTGGCTGTGCTCGCACTTACAGTTTGACTGTGTTTGGTCCGACGTGTGATTTGGCTGACAAGGTGTTGGAGGGTGACCAGTTACCAGAACTGGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTTGGCGCGTAGCAGCCACTTCCATGGTTTTGGCTCCGCCAAGATCACCTATCTTAGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00330 ko00480 ko01100 ko01110 ko01130 map00330 map00480 map01100 map01110 map01130
Pfam Domains
Protein Families
Orn_Arg_deC_N Orn_DAP_Arg_deC

Protein Analysis

204

Amino Acids

22.15

Weight (kDa)

9.02

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Orn_Arg_deC_N PF02784 3 - 70 7.8e-19 Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC PF00278 143 - 181 8.3e-07 Pyridoxal-dependent decarboxylase, C-terminal sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 381
AccII CGCG 1 cut(s) 559
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 379, 588
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 117
AcuI CTGAAG 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 28
AflIII ACRYGT 1 cut(s) 458
AgsI TTSAA 1 cut(s) 102
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 1 cut(s) 374
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 6 cut(s) 146, 194, 198, 272, 296, 413
AluI AGCT 6 cut(s) 146, 194, 198, 272, 296, 413
Alw21I GWGCWC 1 cut(s) 427
AlwI GGATC 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 269, 564
ApoI RAATTY 1 cut(s) 117
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AspLEI GCGC 2 cut(s) 373, 559
AspS9I GGNCC 2 cut(s) 31, 452
AsuHPI GGTGA 3 cut(s) 500, 523, 589
AsuII TTCGAA 1 cut(s) 327
AsuNHI GCTAGC 1 cut(s) 194
AvaII GGWCC 2 cut(s) 31, 452
BaeGI GKGCMC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 427
BbvI GCAGC 2 cut(s) 281, 576
BccI CCATC 2 cut(s) 56, 391
BciT130I CCWGG 1 cut(s) 376
BfaI CTAG 3 cut(s) 195, 338, 368
BfoI RGCGCY 1 cut(s) 374
BisI GCNGC 2 cut(s) 270, 565
BlsI GCNGC 2 cut(s) 271, 566
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 2 cut(s) 31, 452
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 31, 452
BmiI GGNNCC 2 cut(s) 383, 586
BmrFI CCNGG 1 cut(s) 376
BmtI GCTAGC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 527
Bpu14I TTCGAA 1 cut(s) 327
BpuEI CTTGAG 1 cut(s) 78
BsaJI CCNNGG 3 cut(s) 84, 374, 574
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse1I ACTGG 3 cut(s) 421, 493, 510
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 84, 374, 574
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 2 cut(s) 117, 301
BseNI ACTGG 3 cut(s) 421, 493, 510
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 2 cut(s) 281, 576
BseYI CCCAGC 1 cut(s) 296
Bsh1236I CGCG 1 cut(s) 559
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 427
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 378
Bsp119I TTCGAA 1 cut(s) 327
Bsp1286I GDGCHC 2 cut(s) 8, 427
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 163, 594
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 2 cut(s) 379, 588
BspCNI CTCAG 2 cut(s) 118, 300
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 559
BspLI GGNNCC 2 cut(s) 383, 586
BspOI GCTAGC 1 cut(s) 198
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 381
BsrI ACTGG 3 cut(s) 421, 493, 510
BssECI CCNNGG 3 cut(s) 84, 374, 574
BssMI GATC 2 cut(s) 163, 594
BssT1I CCWWGG 2 cut(s) 84, 574
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 3 cut(s) 113, 437, 445
BstBI TTCGAA 1 cut(s) 327
BstC8I GCNNGC 3 cut(s) 78, 196, 427
BstDEI CTNAG 3 cut(s) 126, 287, 605
BstDSI CCRYGG 1 cut(s) 574
BstEII GGTNACC 1 cut(s) 488
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 559
BstH2I RGCGCY 1 cut(s) 374
BstHHI GCGC 2 cut(s) 373, 559
BstKTI GATC 2 cut(s) 166, 597
BstMBI GATC 2 cut(s) 163, 594
BstMWI GCNNNNNNNGC 3 cut(s) 278, 350, 426
BstNI CCWGG 1 cut(s) 376
BstPI GGTNACC 1 cut(s) 488
BstSCI CCNGG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 8
BstUI CGCG 1 cut(s) 559
BstV1I GCAGC 2 cut(s) 281, 576
BstXI CCANNNNNNTGG 3 cut(s) 88, 575, 581
BtgI CCRYGG 1 cut(s) 574
BtrI CACGTC 1 cut(s) 459
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 3 cut(s) 78, 196, 427
CfoI GCGC 2 cut(s) 373, 559
Cfr13I GGNCC 2 cut(s) 31, 452
CviAII CATG 3 cut(s) 9, 538, 575
DdeI CTNAG 3 cut(s) 126, 287, 605
DpnI GATC 2 cut(s) 165, 596
DpnII GATC 2 cut(s) 163, 594
EciI GGCGGA 1 cut(s) 577
Eco130I CCWWGG 2 cut(s) 84, 574
Eco47I GGWCC 2 cut(s) 31, 452
Eco57I CTGAAG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 488
EcoO65I GGTNACC 1 cut(s) 488
EcoRI GAATTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 2 cut(s) 84, 574
ErhI CCWWGG 2 cut(s) 84, 574
FaeI CATG 3 cut(s) 12, 541, 578
FaiI YATR 6 cut(s) 10, 177, 314, 539, 549, 576
FaqI GGGAC 1 cut(s) 378
FatI CATG 3 cut(s) 8, 537, 574
Fnu4HI GCNGC 2 cut(s) 270, 565
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 2 cut(s) 270, 565
FspBI CTAG 3 cut(s) 195, 338, 368
GlaI GCGC 2 cut(s) 372, 558
GluI GCNGC 2 cut(s) 270, 565
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 374
HapII CCGG 1 cut(s) 161
HhaI GCGC 2 cut(s) 373, 559
Hin1II CATG 3 cut(s) 12, 541, 578
Hin6I GCGC 2 cut(s) 371, 557
HinP1I GCGC 2 cut(s) 371, 557
HinfI GANTC 3 cut(s) 70, 134, 285
HpaII CCGG 1 cut(s) 161
HphI GGTGA 3 cut(s) 500, 523, 589
Hpy188I TCNGA 6 cut(s) 69, 127, 152, 233, 290, 456
Hpy188III TCNNGA 2 cut(s) 161, 394
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 3 cut(s) 113, 437, 445
HpyCH4IV ACGT 3 cut(s) 388, 458, 551
HpyCH4V TGCA 2 cut(s) 57, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 350, 426
HpyF3I CTNAG 3 cut(s) 126, 287, 605
HpySE526I ACGT 3 cut(s) 388, 458, 551
Hsp92II CATG 3 cut(s) 12, 541, 578
HspAI GCGC 2 cut(s) 371, 557
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 163, 594
LmnI GCTCC 2 cut(s) 264, 590
Lsp1109I GCAGC 2 cut(s) 281, 576
MaeI CTAG 3 cut(s) 195, 338, 368
MaeII ACGT 3 cut(s) 388, 458, 551
MaeIII GTNAC 3 cut(s) 17, 488, 495
MalI GATC 2 cut(s) 165, 596
MboI GATC 2 cut(s) 163, 594
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 2 cut(s) 8, 427
MluCI AATT 4 cut(s) 117, 208, 517, 610
MlyI GAGTC 2 cut(s) 143, 279
MmeI TCCRAC 3 cut(s) 58, 462, 479
MnlI CCTC 3 cut(s) 272, 478, 502
MroI TCCGGA 1 cut(s) 160
MseI TTAA 1 cut(s) 613
MslI CAYNNNNRTG 3 cut(s) 13, 86, 573
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 559
MwoI GCNNNNNNNGC 3 cut(s) 278, 350, 426
NcoI CCATGG 1 cut(s) 574
NdeII GATC 2 cut(s) 163, 594
NheI GCTAGC 1 cut(s) 194
NlaIII CATG 3 cut(s) 12, 541, 578
NlaIV GGNNCC 2 cut(s) 383, 586
NmuCI GTSAC 1 cut(s) 488
NspV TTCGAA 1 cut(s) 327
OliI CACNNNNGTG 1 cut(s) 86
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 271, 566
PleI GAGTC 2 cut(s) 142, 279
PpsI GAGTC 2 cut(s) 142, 279
Psp6I CCWGG 1 cut(s) 374
PspEI GGTNACC 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 383, 586
PspPI GGNCC 2 cut(s) 31, 452
RseI CAYNNNNRTG 3 cut(s) 13, 86, 573
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 2 cut(s) 270, 565
Sau3AI GATC 2 cut(s) 163, 594
Sau96I GGNCC 2 cut(s) 31, 452
SchI GAGTC 2 cut(s) 143, 279
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 2 cut(s) 8, 427
SfuI TTCGAA 1 cut(s) 327
SinI GGWCC 2 cut(s) 31, 452
SmiMI CAYNNNNRTG 3 cut(s) 13, 86, 573
SmlI CTYRAG 1 cut(s) 93
SmoI CTYRAG 1 cut(s) 93
Sse9I AATT 4 cut(s) 117, 208, 517, 610
SsiI CCGC 2 cut(s) 379, 588
SspMI CTAG 3 cut(s) 195, 338, 368
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 2 cut(s) 84, 574
TaaI ACNGT 3 cut(s) 113, 437, 445
TaiI ACGT 3 cut(s) 391, 461, 554
TaqI TCGA 2 cut(s) 108, 327
TasI AATT 4 cut(s) 117, 208, 517, 610
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 2 cut(s) 269, 564
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 1 cut(s) 294
VpaK11BI GGWCC 2 cut(s) 31, 452
XapI RAATTY 1 cut(s) 117
XspI CTAG 3 cut(s) 195, 338, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.