RchiOBHm_Chr1g0337471

beta-1,3-galactosyltransferase 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001006
Physical Location & Seq
Forward (+)
29225633 .. 29226413
781 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
ATGAAGTCCACATGTGGATATGTTTTTATGCTTGCTGGAAGTGCTGTAGCATGGAAAACCATGAAACAAAAATTAATTGCCACCTCCACAATGCAAGCAGAATACATAGCTGTATATGAGGGAGTCTGTGAAAGCTTATGGATCAAGAATTTTTTGATGCAAAATAAAGTCCTCAAGTCTATAGTCTCAGGAGCACTCAAAATATTCTGTGATAATGTGGCTGCTGTCTTTTTTGCAAAGAACAGCAAGAGATCGAATAATTCTAAGCATATTGATCTCAAGTACTATAGTGTGAGACAGAGAGTTGATTTTGGTGACATAGAAGTTTTGAACATTGATACAGAAGCTCAACTTGCAGATCCATTCACTAAAGCTTTAACAGTTGCAAGTTTGCAAAAACACATCAAGTACTTGGGAATTTTATCTCAGTTGGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T

Protein Analysis

146

Amino Acids

16.34

Weight (kDa)

9.24

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 149, 353
AcsI RAATTY 2 cut(s) 148, 417
AfaI GTAC 2 cut(s) 284, 410
AflIII ACRYGT 1 cut(s) 11
AgsI TTSAA 1 cut(s) 331
AluBI AGCT 4 cut(s) 110, 135, 347, 374
AluI AGCT 4 cut(s) 110, 135, 347, 374
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 190, 289
AlwI GGATC 2 cut(s) 149, 353
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 148, 417
AseI ATTAAT 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 208
BcoDI GTCTC 2 cut(s) 190, 289
BfmI CTRYAG 3 cut(s) 45, 180, 286
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 2 cut(s) 284, 410
BmsI GCATC 2 cut(s) 147, 424
BpuEI CTTGAG 2 cut(s) 158, 263
BseGI GGATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 201, 440
BseXI GCAGC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 190, 289
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 4 cut(s) 141, 251, 274, 358
BspCNI CTCAG 2 cut(s) 200, 439
BspPI GGATC 2 cut(s) 149, 353
BssMI GATC 4 cut(s) 141, 251, 274, 358
Bst4CI ACNGT 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 33, 96
BstDEI CTNAG 3 cut(s) 187, 264, 426
BstF5I GGATG 1 cut(s) 439
BstKTI GATC 4 cut(s) 144, 254, 277, 361
BstMAI GTCTC 2 cut(s) 190, 289
BstMBI GATC 4 cut(s) 141, 251, 274, 358
BstMWI GCNNNNNNNGC 2 cut(s) 41, 353
BstNSI RCATGY 1 cut(s) 15
BstSFI CTRYAG 3 cut(s) 45, 180, 286
BstV1I GCAGC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BtsCI GGATG 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 33, 96
Csp6I GTAC 2 cut(s) 283, 409
CviAII CATG 3 cut(s) 12, 51, 61
CviJI RGCY 5 cut(s) 110, 135, 221, 347, 374
CviKI_1 RGCY 5 cut(s) 110, 135, 221, 347, 374
CviQI GTAC 2 cut(s) 283, 409
DdeI CTNAG 3 cut(s) 187, 264, 426
DpnI GATC 4 cut(s) 143, 253, 276, 360
DpnII GATC 4 cut(s) 141, 251, 274, 358
FaeI CATG 3 cut(s) 15, 54, 64
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FatI CATG 3 cut(s) 11, 50, 60
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
Hin1II CATG 3 cut(s) 15, 54, 64
HindIII AAGCTT 2 cut(s) 133, 372
HinfI GANTC 1 cut(s) 123
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 9
Hpy188III TCNNGA 2 cut(s) 145, 189
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4V TGCA 6 cut(s) 94, 160, 236, 356, 386, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 353
HpyF3I CTNAG 3 cut(s) 187, 264, 426
Hsp92II CATG 3 cut(s) 15, 54, 64
Kzo9I GATC 4 cut(s) 141, 251, 274, 358
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 2 cut(s) 21, 174
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 147, 424
MaeIII GTNAC 1 cut(s) 314
MalI GATC 4 cut(s) 143, 253, 276, 360
MboI GATC 4 cut(s) 141, 251, 274, 358
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 5 cut(s) 71, 75, 148, 259, 417
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 3 cut(s) 94, 112, 182
MseI TTAA 2 cut(s) 74, 377
MwoI GCNNNNNNNGC 2 cut(s) 41, 353
NdeII GATC 4 cut(s) 141, 251, 274, 358
NlaIII CATG 3 cut(s) 15, 54, 64
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 15
PciI ACATGT 1 cut(s) 11
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PscI ACATGT 1 cut(s) 11
PshBI ATTAAT 1 cut(s) 74
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 2 cut(s) 284, 410
RsaNI GTAC 2 cut(s) 283, 409
SaqAI TTAA 2 cut(s) 74, 377
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 4 cut(s) 141, 251, 274, 358
ScaI AGTACT 2 cut(s) 284, 410
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 196
SetI ASST 5 cut(s) 86, 112, 137, 349, 376
SfaNI GCATC 2 cut(s) 147, 424
SfcI CTRYAG 3 cut(s) 45, 180, 286
SmlI CTYRAG 2 cut(s) 173, 278
SmoI CTYRAG 2 cut(s) 173, 278
Sse9I AATT 5 cut(s) 71, 75, 148, 259, 417
SspI AATATT 1 cut(s) 204
TaaI ACNGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 254
TasI AATT 5 cut(s) 71, 75, 148, 259, 417
TatI WGTACW 2 cut(s) 282, 408
Tru1I TTAA 2 cut(s) 74, 377
Tru9I TTAA 2 cut(s) 74, 377
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 17, 77
VspI ATTAAT 1 cut(s) 74
XapI RAATTY 2 cut(s) 148, 417
XceI RCATGY 1 cut(s) 15
ZrmI AGTACT 2 cut(s) 284, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.